Wall clock time and date at job start Tue Mar 31 2020 01:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.50697 * 109.46874 * 84.99996 * 3 2 1 5 5 C 1.38362 * 119.85154 * 269.72435 * 4 3 2 6 6 C 1.37946 * 120.15345 * 179.76837 * 5 4 3 7 7 C 1.39633 * 119.84291 * 0.53121 * 6 5 4 8 8 C 1.43204 * 120.14870 * 179.70488 * 7 6 5 9 9 N 7.46236 * 100.72207 * 61.23201 * 2 1 3 10 10 C 1.39626 * 119.70256 * 359.71967 * 7 6 5 11 11 C 1.37954 * 119.84604 * 0.02562 * 10 7 6 12 12 S 1.65599 * 119.99791 * 180.02562 * 2 1 3 13 13 O 1.42099 * 106.40401 * 203.53818 * 12 2 1 14 14 O 1.42103 * 106.40122 * 336.45794 * 12 2 1 15 15 C 1.76205 * 107.21913 * 89.99801 * 12 2 1 16 16 H 1.07994 * 119.99577 * 359.97438 * 15 12 2 17 17 C 1.37875 * 119.99777 * 180.02562 * 15 12 2 18 18 N 1.31509 * 120.00309 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99707 * 180.02562 * 17 15 12 20 20 H 1.48506 * 109.47265 * 59.99784 * 19 17 15 21 21 H 1.48499 * 109.47305 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47277 * 299.99869 * 19 17 15 23 23 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 24 24 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 25 25 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 26 26 H 1.09001 * 109.47135 * 205.00098 * 3 2 1 27 27 H 1.09001 * 109.46893 * 325.00392 * 3 2 1 28 28 H 1.07998 * 119.91875 * 0.02562 * 5 4 3 29 29 H 1.07998 * 120.07748 * 180.25761 * 6 5 4 30 30 H 1.08004 * 120.07912 * 179.97438 * 10 7 6 31 31 H 1.08004 * 119.92435 * 179.97438 * 11 10 7 32 32 H 0.97001 * 120.00292 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7656 1.4154 5 6 1.3748 2.5951 1.9557 6 6 1.4979 3.0497 3.2523 7 6 2.6068 2.6799 4.0160 8 6 2.7443 3.1532 5.3606 9 7 2.8534 3.5287 6.4271 10 6 3.5812 1.8468 3.4627 11 6 3.4428 1.3952 2.1666 12 16 2.2930 -1.4342 -0.0006 13 8 3.5760 -1.1571 0.5439 14 8 1.4113 -2.4067 0.5434 15 6 2.5537 -1.8852 -1.6839 16 1 2.1866 -1.2498 -2.4762 17 6 3.2255 -3.0498 -1.9894 18 7 3.6721 -3.8238 -1.0245 19 14 3.5026 -3.5276 -3.7739 20 1 4.2924 -2.4690 -4.4529 21 1 4.2443 -4.8127 -3.8329 22 1 2.1917 -3.6804 -4.4547 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3634 -0.8900 -0.5139 26 1 3.1859 1.1177 -0.4343 27 1 1.6502 2.0043 -0.5894 28 1 0.5199 2.8838 1.3624 29 1 0.7405 3.6937 3.6742 30 1 4.4416 1.5573 4.0478 31 1 4.1960 0.7511 1.7372 32 1 4.1451 -4.6429 -1.2395 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192959626.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:58 Heat of formation + Delta-G solvation = -35.548878 kcal Electronic energy + Delta-G solvation = -19251.523137 eV Core-core repulsion = 16110.712573 eV Total energy + Delta-G solvation = -3140.810564 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.51427 -36.72559 -35.46027 -35.33784 -34.00819 -33.11551 -31.56775 -31.01811 -27.37907 -26.17891 -24.56423 -22.67504 -21.93856 -18.86278 -18.80913 -17.34208 -16.34830 -15.83719 -15.47580 -15.20208 -14.83267 -14.50009 -14.08477 -14.00866 -13.48729 -13.39438 -13.23594 -12.88309 -12.67683 -12.17706 -12.14201 -12.03079 -11.63245 -11.38952 -11.27101 -11.24156 -10.94067 -10.66222 -10.35100 -10.33504 -10.16783 -9.28565 -9.00857 -8.95949 -8.76569 -8.33615 -6.74658 -5.37995 0.75999 1.41683 2.18779 2.61907 2.95779 3.04782 3.10105 3.15081 3.85743 3.89496 4.02574 4.54903 4.59299 4.84369 4.90074 4.98673 5.32938 5.44459 5.59916 5.67191 5.72987 5.80227 5.93620 6.05097 6.09527 6.21371 6.25211 6.32889 6.43586 6.58087 6.76135 6.93076 7.27183 7.43221 7.47577 7.90928 8.83859 10.18774 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.034269 B = 0.004674 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.880387 B = 5989.222433 C = 6262.264755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -1.011 6.011 3 C 0.162 3.838 4 C -0.070 4.070 5 C -0.109 4.109 6 C -0.078 4.078 7 C -0.042 4.042 8 C 0.263 3.737 9 N -0.433 5.433 10 C -0.072 4.072 11 C -0.099 4.099 12 S 2.713 3.287 13 O -0.999 6.999 14 O -1.002 7.002 15 C -1.024 5.024 16 H 0.102 0.898 17 C 0.134 3.866 18 N -0.844 5.844 19 Si 0.919 3.081 20 H -0.264 1.264 21 H -0.276 1.276 22 H -0.264 1.264 23 H 0.045 0.955 24 H 0.059 0.941 25 H 0.072 0.928 26 H 0.097 0.903 27 H 0.081 0.919 28 H 0.131 0.869 29 H 0.128 0.872 30 H 0.132 0.868 31 H 0.158 0.842 32 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.691 11.360 0.182 11.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.845 5.845 3 C 0.035 3.965 4 C -0.073 4.073 5 C -0.128 4.128 6 C -0.099 4.099 7 C -0.046 4.046 8 C -0.052 4.052 9 N -0.108 5.108 10 C -0.093 4.093 11 C -0.117 4.117 12 S 2.814 3.186 13 O -0.990 6.990 14 O -0.992 6.992 15 C -1.157 5.157 16 H 0.120 0.880 17 C -0.085 4.085 18 N -0.474 5.474 19 Si 0.743 3.257 20 H -0.188 1.188 21 H -0.201 1.201 22 H -0.189 1.189 23 H 0.063 0.937 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.115 0.885 27 H 0.099 0.901 28 H 0.149 0.851 29 H 0.146 0.854 30 H 0.150 0.850 31 H 0.175 0.825 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.201 11.322 2.689 12.070 hybrid contribution -0.034 -0.374 -1.886 1.923 sum -3.236 10.948 0.803 11.445 Atomic orbital electron populations 1.21295 0.79922 1.02371 1.00966 1.58045 1.14338 1.21300 1.90832 1.20130 0.98425 0.86587 0.91319 1.20816 0.93746 0.94717 0.98043 1.20981 0.98983 0.97997 0.94839 1.21061 0.95926 0.98971 0.93932 1.16041 0.98642 1.03016 0.86852 1.25823 0.93332 0.93177 0.92820 1.81219 1.08240 1.09587 1.11757 1.21245 0.97598 0.94890 0.95561 1.21604 0.98763 0.98074 0.93274 1.00630 0.71849 0.69636 0.76491 1.93312 1.40870 1.83905 1.80866 1.93365 1.67248 1.57660 1.80955 1.30597 1.50378 1.17004 1.17700 0.88012 1.24737 0.90128 0.93359 1.00234 1.69878 1.30836 1.12776 1.33905 0.86221 0.79310 0.78326 0.81849 1.18801 1.20094 1.18857 0.93677 0.92241 0.90885 0.88513 0.90091 0.85098 0.85360 0.85025 0.82491 0.89779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.51 10.33 59.85 0.62 2.13 16 2 N -1.01 -18.32 3.17 -123.04 -0.39 -18.71 16 3 C 0.16 2.35 5.49 -5.19 -0.03 2.32 16 4 C -0.07 -0.96 5.46 -104.53 -0.57 -1.53 16 5 C -0.11 -1.20 9.68 -39.64 -0.38 -1.58 16 6 C -0.08 -0.83 9.76 -39.17 -0.38 -1.21 16 7 C -0.04 -0.50 5.73 -106.93 -0.61 -1.12 16 8 C 0.26 3.43 15.33 -22.47 -0.34 3.08 16 9 N -0.43 -6.42 18.54 41.84 0.78 -5.64 16 10 C -0.07 -0.92 9.76 -39.17 -0.38 -1.31 16 11 C -0.10 -1.44 9.25 -39.64 -0.37 -1.81 16 12 S 2.71 67.22 4.88 -107.50 -0.52 66.69 16 13 O -1.00 -25.95 15.10 -57.17 -0.86 -26.81 16 14 O -1.00 -28.17 17.09 -57.17 -0.98 -29.14 16 15 C -1.02 -26.73 9.75 30.60 0.30 -26.43 16 16 H 0.10 2.42 7.81 -52.49 -0.41 2.01 16 17 C 0.13 3.58 5.46 -17.82 -0.10 3.48 16 18 N -0.84 -23.94 13.19 55.43 0.73 -23.21 16 19 Si 0.92 19.74 29.54 -169.99 -5.02 14.72 16 20 H -0.26 -5.44 7.11 56.52 0.40 -5.03 16 21 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.66 7.94 -51.93 -0.41 0.25 16 25 H 0.07 1.18 7.79 -51.93 -0.40 0.78 16 26 H 0.10 1.46 7.55 -51.93 -0.39 1.07 16 27 H 0.08 0.88 7.90 -51.93 -0.41 0.47 16 28 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 29 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 30 H 0.13 1.47 8.06 -52.48 -0.42 1.04 16 31 H 0.16 2.59 6.59 -52.48 -0.35 2.24 16 32 H 0.29 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 305.03 15.07 4.60 4.60 Total: -1.00 -33.27 305.03 -7.13 -40.40 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -3.20 Total: 1.09 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: -2.25 Total: -23.98 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: 1.12 Total: -47.57 kcal Atomic # 8 Polarization: -54.11 SS G_CDS: -1.84 Total: -55.95 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Atomic # 16 Polarization: 67.22 SS G_CDS: -0.52 Total: 66.69 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.27 -7.13 -40.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192959626.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.847 kcal (2) G-P(sol) polarization free energy of solvation -33.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds