Wall clock time and date at job start Tue Mar 31 2020 01:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.50697 * 109.46874 * 84.99996 * 3 2 1 5 5 C 1.38362 * 119.85154 * 269.72435 * 4 3 2 6 6 C 1.37946 * 120.15345 * 179.76837 * 5 4 3 7 7 C 1.39633 * 119.84291 * 0.53121 * 6 5 4 8 8 C 1.43204 * 120.14870 * 179.70488 * 7 6 5 9 9 N 7.46236 * 100.72207 * 61.23201 * 2 1 3 10 10 C 1.39626 * 119.70256 * 359.71967 * 7 6 5 11 11 C 1.37954 * 119.84604 * 0.02562 * 10 7 6 12 12 S 1.65599 * 119.99791 * 180.02562 * 2 1 3 13 13 O 1.42099 * 106.40401 * 203.53818 * 12 2 1 14 14 O 1.42103 * 106.40122 * 336.45794 * 12 2 1 15 15 C 1.76205 * 107.21913 * 89.99801 * 12 2 1 16 16 H 1.07994 * 119.99577 * 359.97438 * 15 12 2 17 17 C 1.37875 * 119.99777 * 180.02562 * 15 12 2 18 18 N 1.31509 * 120.00309 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99707 * 180.02562 * 17 15 12 20 20 H 1.48506 * 109.47265 * 59.99784 * 19 17 15 21 21 H 1.48499 * 109.47305 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47277 * 299.99869 * 19 17 15 23 23 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 24 24 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 25 25 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 26 26 H 1.09001 * 109.47135 * 205.00098 * 3 2 1 27 27 H 1.09001 * 109.46893 * 325.00392 * 3 2 1 28 28 H 1.07998 * 119.91875 * 0.02562 * 5 4 3 29 29 H 1.07998 * 120.07748 * 180.25761 * 6 5 4 30 30 H 1.08004 * 120.07912 * 179.97438 * 10 7 6 31 31 H 1.08004 * 119.92435 * 179.97438 * 11 10 7 32 32 H 0.97001 * 120.00292 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7656 1.4154 5 6 1.3748 2.5951 1.9557 6 6 1.4979 3.0497 3.2523 7 6 2.6068 2.6799 4.0160 8 6 2.7443 3.1532 5.3606 9 7 2.8534 3.5287 6.4271 10 6 3.5812 1.8468 3.4627 11 6 3.4428 1.3952 2.1666 12 16 2.2930 -1.4342 -0.0006 13 8 3.5760 -1.1571 0.5439 14 8 1.4113 -2.4067 0.5434 15 6 2.5537 -1.8852 -1.6839 16 1 2.1866 -1.2498 -2.4762 17 6 3.2255 -3.0498 -1.9894 18 7 3.6721 -3.8238 -1.0245 19 14 3.5026 -3.5276 -3.7739 20 1 4.2924 -2.4690 -4.4529 21 1 4.2443 -4.8127 -3.8329 22 1 2.1917 -3.6804 -4.4547 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3634 -0.8900 -0.5139 26 1 3.1859 1.1177 -0.4343 27 1 1.6502 2.0043 -0.5894 28 1 0.5199 2.8838 1.3624 29 1 0.7405 3.6937 3.6742 30 1 4.4416 1.5573 4.0478 31 1 4.1960 0.7511 1.7372 32 1 4.1451 -4.6429 -1.2395 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192959626.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:57 Heat of formation + Delta-G solvation = -58.878454 kcal Electronic energy + Delta-G solvation = -19252.534783 eV Core-core repulsion = 16110.712573 eV Total energy + Delta-G solvation = -3141.822211 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.50622 -37.86157 -37.33824 -36.69779 -36.02746 -35.11037 -32.66124 -31.96534 -28.50508 -28.20239 -25.80457 -23.63721 -23.04769 -20.72786 -19.84145 -19.01655 -18.17732 -17.08269 -16.95218 -16.62163 -16.21469 -15.81402 -15.41869 -15.19827 -14.96409 -14.58382 -14.35767 -14.02614 -13.91306 -13.75533 -13.58189 -13.22771 -13.16267 -12.96778 -12.79799 -12.44629 -12.39625 -12.31039 -12.26164 -11.95318 -11.76114 -11.20180 -10.91012 -9.90618 -9.86629 -9.70124 -8.70457 -7.44210 -0.26082 0.41286 0.47550 1.36894 1.38099 1.50961 1.57637 1.91230 2.23678 2.61695 2.81058 2.86326 3.10306 3.81824 3.91624 3.97924 4.03460 4.22999 4.32028 4.49008 4.61124 4.75177 4.82251 4.90024 4.91829 5.08905 5.11447 5.20833 5.30136 5.35370 5.41524 5.71610 5.92560 5.94832 6.06923 6.40335 6.82756 8.23579 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.034269 B = 0.004674 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.880387 B = 5989.222433 C = 6262.264755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -1.006 6.006 3 C 0.154 3.846 4 C -0.083 4.083 5 C -0.097 4.097 6 C -0.064 4.064 7 C -0.045 4.045 8 C 0.284 3.716 9 N -0.465 5.465 10 C -0.077 4.077 11 C -0.125 4.125 12 S 2.716 3.284 13 O -1.025 7.025 14 O -1.047 7.047 15 C -1.045 5.045 16 H 0.120 0.880 17 C 0.071 3.929 18 N -0.894 5.894 19 Si 0.984 3.016 20 H -0.248 1.248 21 H -0.267 1.267 22 H -0.251 1.251 23 H 0.053 0.947 24 H 0.111 0.889 25 H 0.054 0.946 26 H 0.080 0.920 27 H 0.131 0.869 28 H 0.170 0.830 29 H 0.162 0.838 30 H 0.137 0.863 31 H 0.126 0.874 32 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.477 13.537 -1.301 14.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.843 5.843 3 C 0.029 3.971 4 C -0.086 4.086 5 C -0.115 4.115 6 C -0.085 4.085 7 C -0.048 4.048 8 C -0.031 4.031 9 N -0.141 5.141 10 C -0.098 4.098 11 C -0.144 4.144 12 S 2.818 3.182 13 O -1.015 7.015 14 O -1.037 7.037 15 C -1.178 5.178 16 H 0.138 0.862 17 C -0.141 4.141 18 N -0.526 5.526 19 Si 0.803 3.197 20 H -0.172 1.172 21 H -0.192 1.192 22 H -0.175 1.175 23 H 0.071 0.929 24 H 0.130 0.870 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.148 0.852 28 H 0.188 0.812 29 H 0.180 0.820 30 H 0.155 0.845 31 H 0.144 0.856 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.987 13.508 1.215 14.450 hybrid contribution 0.480 -0.945 -1.374 1.735 sum -4.507 12.564 -0.159 13.349 Atomic orbital electron populations 1.21603 0.77665 1.04042 1.02127 1.57482 1.15630 1.20494 1.90739 1.20454 0.98139 0.85748 0.92764 1.20837 0.94296 0.95834 0.97605 1.21321 0.98874 0.96230 0.95070 1.21456 0.95474 0.98036 0.93485 1.16098 0.99194 1.03042 0.86505 1.25856 0.92324 0.92250 0.92631 1.81244 1.09340 1.10851 1.12703 1.21264 0.98328 0.95142 0.95036 1.21462 0.99382 0.99147 0.94433 1.00147 0.71402 0.70600 0.76088 1.93277 1.42504 1.84642 1.81126 1.93296 1.68147 1.60696 1.81603 1.31054 1.50094 1.17525 1.19121 0.86208 1.25964 0.89543 0.93317 1.05323 1.69984 1.32313 1.13724 1.36557 0.85242 0.80043 0.78697 0.75748 1.17165 1.19157 1.17458 0.92859 0.87017 0.92759 0.90196 0.85157 0.81231 0.82020 0.84514 0.85576 0.89267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.48 10.33 127.77 1.32 3.80 16 2 N -1.01 -35.15 3.17 -543.20 -1.72 -36.87 16 3 C 0.15 4.14 5.49 85.63 0.47 4.61 16 4 C -0.08 -2.12 5.46 -19.81 -0.11 -2.22 16 5 C -0.10 -1.71 9.68 22.23 0.22 -1.50 16 6 C -0.06 -1.10 9.76 22.54 0.22 -0.88 16 7 C -0.04 -0.99 5.73 -21.36 -0.12 -1.11 16 8 C 0.28 6.96 15.33 88.33 1.35 8.31 16 9 N -0.47 -13.33 18.54 19.00 0.35 -12.98 16 10 C -0.08 -1.97 9.76 22.54 0.22 -1.75 16 11 C -0.13 -3.74 9.25 22.23 0.21 -3.53 16 12 S 2.72 137.80 4.88 -56.49 -0.28 137.53 16 13 O -1.03 -55.75 15.10 -128.00 -1.93 -57.68 16 14 O -1.05 -60.93 17.09 -128.00 -2.19 -63.12 16 15 C -1.05 -55.03 9.75 67.73 0.66 -54.37 16 16 H 0.12 5.60 7.81 -2.91 -0.02 5.58 16 17 C 0.07 3.86 5.46 84.66 0.46 4.32 16 18 N -0.89 -52.28 13.19 21.45 0.28 -52.00 16 19 Si 0.98 39.85 29.54 68.60 2.03 41.88 16 20 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16 21 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 22 H -0.25 -9.53 7.11 99.48 0.71 -8.83 16 23 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.11 1.89 7.94 -2.38 -0.02 1.87 16 25 H 0.05 1.69 7.79 -2.39 -0.02 1.67 16 26 H 0.08 2.41 7.55 -2.39 -0.02 2.39 16 27 H 0.13 2.21 7.90 -2.39 -0.02 2.19 16 28 H 0.17 1.73 8.06 -2.91 -0.02 1.70 16 29 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 30 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 31 H 0.13 4.51 6.59 -2.91 -0.02 4.49 16 32 H 0.30 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -76.13 305.03 2.59 -73.54 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 1.14 Total: 14.03 kcal Atomic # 6 Polarization: -49.22 SS G_CDS: 4.90 Total: -44.33 kcal Atomic # 7 Polarization: -100.77 SS G_CDS: -1.09 Total: -101.85 kcal Atomic # 8 Polarization: -116.68 SS G_CDS: -4.12 Total: -120.80 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Atomic # 16 Polarization: 137.80 SS G_CDS: -0.28 Total: 137.53 kcal Total: -76.13 2.59 -73.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192959626.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.663 kcal (2) G-P(sol) polarization free energy of solvation -76.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds