Wall clock time and date at job start Tue Mar 31 2020 01:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46994 * 2 1 4 4 C 1.47196 * 109.47185 * 239.99887 * 2 1 3 5 5 N 2.60805 * 109.47270 * 240.00042 * 2 1 3 6 6 C 1.50697 * 109.47303 * 119.99562 * 2 1 3 7 7 C 1.38289 * 119.92643 * 240.00325 * 6 2 1 8 8 C 1.38109 * 120.07111 * 179.97438 * 7 6 2 9 9 C 1.38908 * 119.92884 * 359.97438 * 8 7 6 10 10 N 1.39675 * 120.07704 * 179.97438 * 9 8 7 11 11 S 1.65602 * 119.99515 * 75.03024 * 10 9 8 12 12 O 1.42096 * 106.39840 * 177.34668 * 11 10 9 13 13 O 1.42094 * 106.40486 * 310.27766 * 11 10 9 14 14 C 1.76208 * 107.21327 * 63.81520 * 11 10 9 15 15 H 1.07991 * 120.00348 * 0.85095 * 14 11 10 16 16 C 1.37873 * 119.99515 * 180.85085 * 14 11 10 17 17 N 1.31519 * 120.00571 * 359.97438 * 16 14 11 18 18 Si 1.86804 * 119.99699 * 179.97438 * 16 14 11 19 19 H 1.48494 * 109.47282 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46993 * 120.00148 * 18 16 14 21 21 H 1.48501 * 109.47350 * 239.99971 * 18 16 14 22 22 C 1.38916 * 119.84685 * 0.26132 * 9 8 7 23 23 C 1.38101 * 119.92768 * 359.48221 * 22 9 8 24 24 H 1.09007 * 109.46571 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47214 * 299.99707 * 1 2 3 26 26 H 1.09001 * 109.47333 * 60.00805 * 1 2 3 27 27 H 1.07996 * 119.96408 * 0.02562 * 7 6 2 28 28 H 1.07998 * 120.03316 * 179.97438 * 8 7 6 29 29 H 0.96999 * 120.00041 * 255.04016 * 10 9 8 30 30 H 0.97001 * 119.99929 * 179.97438 * 17 16 14 31 31 H 1.08005 * 120.03074 * 179.72384 * 22 9 8 32 32 H 1.08003 * 119.96626 * 180.25116 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 -1.2018 5 7 2.3994 -1.2294 -2.1295 6 6 2.0324 -0.7103 1.2305 7 6 2.8273 -0.0367 2.1397 8 6 3.2889 -0.6846 3.2687 9 6 2.9535 -2.0141 3.4906 10 7 3.4190 -2.6725 4.6311 11 16 2.7392 -2.3532 6.1070 12 8 3.3792 -3.2146 7.0383 13 8 2.7199 -0.9388 6.2423 14 6 1.0559 -2.8684 6.0282 15 1 0.6689 -3.3124 5.1230 16 6 0.2330 -2.7046 7.1222 17 7 0.7044 -2.1643 8.2247 18 14 -1.5516 -3.2501 7.0384 19 1 -1.8317 -3.8233 5.6975 20 1 -1.8039 -4.2794 8.0787 21 1 -2.4379 -2.0819 7.2728 22 6 2.1588 -2.6892 2.5727 23 6 1.6962 -2.0339 1.4486 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 3.0867 0.9974 1.9672 28 1 3.9100 -0.1580 3.9782 29 1 4.1406 -3.3167 4.5586 30 1 0.1252 -2.0487 8.9942 31 1 1.8999 -3.7243 2.7401 32 1 1.0750 -2.5569 0.7366 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192978804.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:05 Heat of formation + Delta-G solvation = -47.018228 kcal Electronic energy + Delta-G solvation = -19127.032281 eV Core-core repulsion = 15985.724368 eV Total energy + Delta-G solvation = -3141.307913 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.61847 -37.13329 -35.33947 -34.97629 -34.05277 -33.16541 -32.63352 -30.77852 -27.97970 -26.17928 -24.59945 -22.56972 -21.48464 -19.13966 -17.77691 -17.73835 -17.03124 -16.25781 -16.03436 -15.06620 -14.89025 -14.18970 -14.12777 -13.90390 -13.61310 -13.49612 -13.19569 -12.95292 -12.77485 -12.22950 -12.07988 -11.84399 -11.67901 -11.39077 -11.26474 -11.15365 -10.97582 -10.62615 -10.61782 -10.39123 -10.27579 -9.41817 -9.29538 -8.83659 -8.71493 -8.25080 -6.74974 -5.36612 1.31411 1.62591 2.24226 2.65529 2.66909 3.03067 3.11571 3.18527 3.69672 4.02000 4.05284 4.53358 4.60437 4.65795 4.81299 4.94644 5.16474 5.22957 5.50307 5.56137 5.64608 5.65693 5.79686 5.85432 5.97733 6.22254 6.32940 6.53162 6.63625 6.67081 6.84994 7.13147 7.29105 7.43847 7.82198 7.92835 8.84785 10.19604 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.021054 B = 0.005477 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.579275 B = 5111.520730 C = 5858.977455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.051 3.949 3 H 0.122 0.878 4 C 0.217 3.783 5 N -0.440 5.440 6 C -0.103 4.103 7 C -0.097 4.097 8 C -0.108 4.108 9 C 0.171 3.829 10 N -1.089 6.089 11 S 2.706 3.294 12 O -1.001 7.001 13 O -0.996 6.996 14 C -1.014 5.014 15 H 0.104 0.896 16 C 0.134 3.866 17 N -0.845 5.845 18 Si 0.921 3.079 19 H -0.262 1.262 20 H -0.271 1.271 21 H -0.270 1.270 22 C -0.116 4.116 23 C -0.102 4.102 24 H 0.066 0.934 25 H 0.083 0.917 26 H 0.065 0.935 27 H 0.129 0.871 28 H 0.136 0.864 29 H 0.411 0.589 30 H 0.291 0.709 31 H 0.130 0.870 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.725 3.963 -12.733 13.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.030 3.970 3 H 0.139 0.861 4 C -0.101 4.101 5 N -0.115 5.115 6 C -0.105 4.105 7 C -0.115 4.115 8 C -0.129 4.129 9 C 0.076 3.924 10 N -0.839 5.839 11 S 2.808 3.192 12 O -0.992 6.992 13 O -0.985 6.985 14 C -1.148 5.148 15 H 0.122 0.878 16 C -0.084 4.084 17 N -0.475 5.475 18 Si 0.744 3.256 19 H -0.185 1.185 20 H -0.196 1.196 21 H -0.195 1.195 22 C -0.137 4.137 23 C -0.121 4.121 24 H 0.085 0.915 25 H 0.102 0.898 26 H 0.084 0.916 27 H 0.147 0.853 28 H 0.153 0.847 29 H 0.246 0.754 30 H 0.101 0.899 31 H 0.148 0.852 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.205 3.721 -13.164 13.681 hybrid contribution -1.277 -0.703 0.170 1.468 sum -1.072 3.018 -12.994 13.383 Atomic orbital electron populations 1.21871 0.91073 1.03733 1.03535 1.17753 0.97155 0.98249 0.83855 0.86070 1.29155 0.93193 0.93673 0.94051 1.81203 1.09018 1.09303 1.11999 1.19343 1.00867 0.94689 0.95552 1.20859 0.97191 0.99673 0.93809 1.21585 0.99741 0.94535 0.96995 1.17342 0.95492 0.91625 0.87980 1.53921 1.50216 1.56129 1.23619 1.00831 0.75816 0.73482 0.69117 1.93390 1.78576 1.68525 1.58671 1.93367 1.88744 1.32610 1.83824 1.30467 1.20100 1.56687 1.07566 0.87778 1.24734 1.01028 0.89808 0.92855 1.69900 1.38579 1.35692 1.03317 0.86125 0.81032 0.79039 0.79358 1.18541 1.19612 1.19534 1.21467 0.97148 1.00880 0.94190 1.20787 0.99844 0.93912 0.97519 0.91459 0.89825 0.91620 0.85324 0.84656 0.75419 0.89877 0.85221 0.86098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 8.96 37.16 0.33 -0.70 16 2 C 0.05 0.43 2.95 -94.56 -0.28 0.15 16 3 H 0.12 0.69 7.87 -51.93 -0.41 0.28 16 4 C 0.22 2.38 14.25 -20.76 -0.30 2.08 16 5 N -0.44 -6.01 18.54 42.16 0.78 -5.23 16 6 C -0.10 -1.19 4.76 -104.59 -0.50 -1.68 16 7 C -0.10 -1.20 9.66 -39.61 -0.38 -1.59 16 8 C -0.11 -1.73 9.29 -39.38 -0.37 -2.10 16 9 C 0.17 2.99 5.79 -83.79 -0.49 2.50 16 10 N -1.09 -20.96 5.70 32.41 0.18 -20.77 16 11 S 2.71 69.34 4.99 -107.50 -0.54 68.80 16 12 O -1.00 -28.50 18.02 -57.17 -1.03 -29.53 16 13 O -1.00 -27.72 17.06 -57.17 -0.98 -28.70 16 14 C -1.01 -27.06 9.65 30.60 0.30 -26.77 16 15 H 0.10 2.54 7.81 -52.49 -0.41 2.13 16 16 C 0.13 3.64 5.46 -17.82 -0.10 3.54 16 17 N -0.85 -24.26 13.19 55.43 0.73 -23.53 16 18 Si 0.92 20.05 29.54 -169.99 -5.02 15.03 16 19 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 21 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 22 C -0.12 -1.78 9.97 -39.38 -0.39 -2.17 16 23 C -0.10 -1.31 8.79 -39.61 -0.35 -1.66 16 24 H 0.07 0.52 7.38 -51.93 -0.38 0.13 16 25 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.13 1.18 7.94 -52.49 -0.42 0.76 16 28 H 0.14 2.22 7.93 -52.49 -0.42 1.80 16 29 H 0.41 6.66 8.95 -34.48 -0.31 6.35 16 30 H 0.29 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.13 1.86 8.06 -52.48 -0.42 1.43 16 32 H 0.12 1.32 7.56 -52.48 -0.40 0.93 16 LS Contribution 306.00 15.07 4.61 4.61 Total: -1.00 -35.37 306.00 -6.91 -42.29 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -3.14 Total: 5.42 kcal Atomic # 6 Polarization: -25.88 SS G_CDS: -2.52 Total: -28.39 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: 1.70 Total: -49.53 kcal Atomic # 8 Polarization: -56.22 SS G_CDS: -2.01 Total: -58.23 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 16 Polarization: 69.34 SS G_CDS: -0.54 Total: 68.80 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -35.37 -6.91 -42.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192978804.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.733 kcal (2) G-P(sol) polarization free energy of solvation -35.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds