Wall clock time and date at job start Tue Mar 31 2020 01:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46994 * 2 1 4 4 C 1.47196 * 109.47185 * 239.99887 * 2 1 3 5 5 N 2.60805 * 109.47270 * 240.00042 * 2 1 3 6 6 C 1.50697 * 109.47303 * 119.99562 * 2 1 3 7 7 C 1.38289 * 119.92643 * 240.00325 * 6 2 1 8 8 C 1.38109 * 120.07111 * 179.97438 * 7 6 2 9 9 C 1.38908 * 119.92884 * 359.97438 * 8 7 6 10 10 N 1.39675 * 120.07704 * 179.97438 * 9 8 7 11 11 S 1.65602 * 119.99515 * 75.03024 * 10 9 8 12 12 O 1.42096 * 106.39840 * 177.34668 * 11 10 9 13 13 O 1.42094 * 106.40486 * 310.27766 * 11 10 9 14 14 C 1.76208 * 107.21327 * 63.81520 * 11 10 9 15 15 H 1.07991 * 120.00348 * 0.85095 * 14 11 10 16 16 C 1.37873 * 119.99515 * 180.85085 * 14 11 10 17 17 N 1.31519 * 120.00571 * 359.97438 * 16 14 11 18 18 Si 1.86804 * 119.99699 * 179.97438 * 16 14 11 19 19 H 1.48494 * 109.47282 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46993 * 120.00148 * 18 16 14 21 21 H 1.48501 * 109.47350 * 239.99971 * 18 16 14 22 22 C 1.38916 * 119.84685 * 0.26132 * 9 8 7 23 23 C 1.38101 * 119.92768 * 359.48221 * 22 9 8 24 24 H 1.09007 * 109.46571 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47214 * 299.99707 * 1 2 3 26 26 H 1.09001 * 109.47333 * 60.00805 * 1 2 3 27 27 H 1.07996 * 119.96408 * 0.02562 * 7 6 2 28 28 H 1.07998 * 120.03316 * 179.97438 * 8 7 6 29 29 H 0.96999 * 120.00041 * 255.04016 * 10 9 8 30 30 H 0.97001 * 119.99929 * 179.97438 * 17 16 14 31 31 H 1.08005 * 120.03074 * 179.72384 * 22 9 8 32 32 H 1.08003 * 119.96626 * 180.25116 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 -1.2018 5 7 2.3994 -1.2294 -2.1295 6 6 2.0324 -0.7103 1.2305 7 6 2.8273 -0.0367 2.1397 8 6 3.2889 -0.6846 3.2687 9 6 2.9535 -2.0141 3.4906 10 7 3.4190 -2.6725 4.6311 11 16 2.7392 -2.3532 6.1070 12 8 3.3792 -3.2146 7.0383 13 8 2.7199 -0.9388 6.2423 14 6 1.0559 -2.8684 6.0282 15 1 0.6689 -3.3124 5.1230 16 6 0.2330 -2.7046 7.1222 17 7 0.7044 -2.1643 8.2247 18 14 -1.5516 -3.2501 7.0384 19 1 -1.8317 -3.8233 5.6975 20 1 -1.8039 -4.2794 8.0787 21 1 -2.4379 -2.0819 7.2728 22 6 2.1588 -2.6892 2.5727 23 6 1.6962 -2.0339 1.4486 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 3.0867 0.9974 1.9672 28 1 3.9100 -0.1580 3.9782 29 1 4.1406 -3.3167 4.5586 30 1 0.1252 -2.0487 8.9942 31 1 1.8999 -3.7243 2.7401 32 1 1.0750 -2.5569 0.7366 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192978804.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:04 Heat of formation + Delta-G solvation = -73.154774 kcal Electronic energy + Delta-G solvation = -19128.165647 eV Core-core repulsion = 15985.724368 eV Total energy + Delta-G solvation = -3142.441278 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.68531 -38.13387 -37.39426 -36.21011 -36.14922 -35.16759 -33.70760 -31.87290 -29.04232 -28.25023 -25.38987 -23.65805 -22.62338 -21.08669 -19.49192 -18.79424 -18.36207 -18.21630 -17.05328 -16.90644 -16.08519 -15.77662 -15.65369 -15.12443 -14.94877 -14.33145 -14.25113 -14.08403 -13.98740 -13.66646 -13.30375 -13.17379 -13.01463 -12.82203 -12.57183 -12.52357 -12.50495 -12.44763 -12.26495 -11.92954 -11.81937 -11.25064 -11.06550 -10.64573 -9.81844 -9.47174 -8.74724 -7.47190 0.00946 0.51331 0.52787 1.35213 1.36518 1.54019 1.80226 1.83270 2.22054 2.59318 2.69541 2.90965 3.16099 3.66156 3.76248 3.99125 4.12584 4.30472 4.34000 4.44969 4.54275 4.64927 4.71069 4.97181 5.07735 5.15217 5.18215 5.29920 5.43717 5.46383 5.59987 5.66690 5.90499 6.00254 6.39230 6.61538 6.79472 8.22193 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.021054 B = 0.005477 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.579275 B = 5111.520730 C = 5858.977455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.058 3.942 3 H 0.161 0.839 4 C 0.241 3.759 5 N -0.490 5.490 6 C -0.089 4.089 7 C -0.088 4.088 8 C -0.131 4.131 9 C 0.130 3.870 10 N -1.074 6.074 11 S 2.713 3.287 12 O -1.042 7.042 13 O -1.027 7.027 14 C -1.032 5.032 15 H 0.120 0.880 16 C 0.072 3.928 17 N -0.894 5.894 18 Si 0.989 3.011 19 H -0.246 1.246 20 H -0.262 1.262 21 H -0.257 1.257 22 C -0.127 4.127 23 C -0.102 4.102 24 H 0.060 0.940 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.168 0.832 28 H 0.121 0.879 29 H 0.422 0.578 30 H 0.299 0.701 31 H 0.133 0.867 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.735 4.755 -14.975 15.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.037 3.963 3 H 0.178 0.822 4 C -0.076 4.076 5 N -0.166 5.166 6 C -0.091 4.091 7 C -0.106 4.106 8 C -0.152 4.152 9 C 0.036 3.964 10 N -0.828 5.828 11 S 2.816 3.184 12 O -1.032 7.032 13 O -1.017 7.017 14 C -1.166 5.166 15 H 0.139 0.861 16 C -0.141 4.141 17 N -0.525 5.525 18 Si 0.807 3.193 19 H -0.168 1.168 20 H -0.186 1.186 21 H -0.181 1.181 22 C -0.148 4.148 23 C -0.120 4.120 24 H 0.079 0.921 25 H 0.108 0.892 26 H 0.103 0.897 27 H 0.185 0.815 28 H 0.139 0.861 29 H 0.259 0.741 30 H 0.109 0.891 31 H 0.151 0.849 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.777 4.512 -15.409 16.154 hybrid contribution -0.595 -0.897 0.745 1.309 sum -2.372 3.615 -14.664 15.288 Atomic orbital electron populations 1.21919 0.89674 1.03845 1.04865 1.17991 0.98063 0.99326 0.80874 0.82171 1.29517 0.91805 0.92490 0.93796 1.81246 1.10747 1.10886 1.13744 1.19678 0.99071 0.94175 0.96160 1.21247 0.95912 1.01291 0.92192 1.21697 1.00748 0.94274 0.98496 1.17662 0.98032 0.92650 0.88094 1.53151 1.50270 1.56642 1.22751 1.00263 0.75764 0.72539 0.69834 1.93324 1.79261 1.69150 1.61499 1.93312 1.89109 1.34249 1.85046 1.30802 1.20723 1.56682 1.08396 0.86144 1.25982 1.06410 0.89452 0.92210 1.69991 1.40798 1.37253 1.04481 0.85115 0.74622 0.79218 0.80329 1.16842 1.18624 1.18131 1.21572 0.97156 1.01293 0.94755 1.21105 0.99409 0.94690 0.96842 0.92055 0.89186 0.89668 0.81474 0.86060 0.74094 0.89081 0.84917 0.83936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.96 71.98 0.64 -0.80 16 2 C 0.06 0.72 2.95 -13.35 -0.04 0.68 16 3 H 0.16 0.86 7.87 -2.38 -0.02 0.84 16 4 C 0.24 4.48 14.25 89.44 1.27 5.75 16 5 N -0.49 -12.34 18.54 20.01 0.37 -11.97 16 6 C -0.09 -1.75 4.76 -19.84 -0.09 -1.84 16 7 C -0.09 -1.95 9.66 22.25 0.21 -1.73 16 8 C -0.13 -4.16 9.29 22.40 0.21 -3.95 16 9 C 0.13 4.55 5.79 38.21 0.22 4.77 16 10 N -1.07 -42.53 5.70 -51.37 -0.29 -42.82 16 11 S 2.71 143.58 4.99 -56.49 -0.28 143.30 16 12 O -1.04 -61.78 18.02 -128.00 -2.31 -64.08 16 13 O -1.03 -59.30 17.06 -128.00 -2.18 -61.49 16 14 C -1.03 -55.51 9.65 67.73 0.65 -54.85 16 15 H 0.12 5.84 7.81 -2.91 -0.02 5.82 16 16 C 0.07 3.94 5.46 84.65 0.46 4.40 16 17 N -0.89 -52.32 13.19 21.45 0.28 -52.03 16 18 Si 0.99 40.10 29.54 68.60 2.03 42.13 16 19 H -0.25 -9.20 7.11 99.48 0.71 -8.50 16 20 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 21 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 22 C -0.13 -3.76 9.97 22.40 0.22 -3.54 16 23 C -0.10 -2.37 8.79 22.25 0.20 -2.17 16 24 H 0.06 0.71 7.38 -2.38 -0.02 0.69 16 25 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.17 2.33 7.94 -2.91 -0.02 2.31 16 28 H 0.12 4.09 7.93 -2.91 -0.02 4.07 16 29 H 0.42 14.24 8.95 -96.74 -0.87 13.37 16 30 H 0.30 15.65 8.31 -92.71 -0.77 14.88 16 31 H 0.13 3.72 8.06 -2.91 -0.02 3.69 16 32 H 0.14 2.67 7.56 -2.91 -0.02 2.65 16 Total: -1.00 -79.43 306.00 1.88 -77.56 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: 0.29 Total: 22.70 kcal Atomic # 6 Polarization: -57.26 SS G_CDS: 3.97 Total: -53.29 kcal Atomic # 7 Polarization: -107.19 SS G_CDS: 0.36 Total: -106.82 kcal Atomic # 8 Polarization: -121.08 SS G_CDS: -4.49 Total: -125.57 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.13 kcal Atomic # 16 Polarization: 143.58 SS G_CDS: -0.28 Total: 143.30 kcal Total: -79.43 1.88 -77.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192978804.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.404 kcal (2) G-P(sol) polarization free energy of solvation -79.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds