Wall clock time and date at job start Tue Mar 31 2020 01:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36797 * 125.08158 * 2 1 4 4 C 1.34243 * 109.94304 * 179.97438 * 3 2 1 5 5 C 1.46501 * 107.02788 * 359.97438 * 4 3 2 6 6 C 1.39661 * 133.91905 * 180.02562 * 5 4 3 7 7 C 1.38209 * 119.58807 * 180.02562 * 6 5 4 8 8 N 1.39969 * 119.88623 * 179.97438 * 7 6 5 9 9 S 1.65605 * 119.99584 * 134.77278 * 8 7 6 10 10 O 1.42095 * 106.40296 * 50.81065 * 9 8 7 11 11 O 1.42100 * 106.39907 * 183.72890 * 9 8 7 12 12 C 1.76201 * 107.21606 * 297.26920 * 9 8 7 13 13 H 1.07996 * 120.00040 * 5.14892 * 12 9 8 14 14 C 1.37882 * 119.99580 * 185.15232 * 12 9 8 15 15 N 1.31514 * 119.99726 * 179.97438 * 14 12 9 16 16 Si 1.86796 * 120.00146 * 0.02562 * 14 12 9 17 17 H 1.48503 * 109.47445 * 89.99954 * 16 14 12 18 18 H 1.48497 * 109.47098 * 209.99889 * 16 14 12 19 19 H 1.48507 * 109.47404 * 329.99610 * 16 14 12 20 20 C 1.39426 * 120.22598 * 0.27433 * 7 6 5 21 21 C 1.37655 * 120.59710 * 359.46066 * 20 7 6 22 22 C 1.37949 * 125.07614 * 179.97438 * 2 1 3 23 23 H 1.08993 * 109.47869 * 270.05027 * 1 2 3 24 24 H 1.09004 * 109.46671 * 30.05115 * 1 2 3 25 25 H 1.09006 * 109.46872 * 150.04428 * 1 2 3 26 26 H 1.08003 * 125.02555 * 359.91942 * 3 2 1 27 27 H 1.07999 * 126.48455 * 180.02562 * 4 3 2 28 28 H 1.08001 * 120.20537 * 0.02562 * 6 5 4 29 29 H 0.96999 * 120.00462 * 314.49209 * 8 7 6 30 30 H 0.97000 * 119.99519 * 180.02562 * 15 14 12 31 31 H 1.07995 * 119.69993 * 179.70676 * 20 7 6 32 32 H 1.08005 * 119.98431 * 180.25645 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2512 1.1195 0.0000 4 6 3.5470 0.7689 0.0006 5 6 3.5953 -0.6953 0.0016 6 6 4.6327 -1.6304 0.0029 7 6 4.3349 -2.9800 0.0031 8 7 5.3697 -3.9225 0.0039 9 16 5.3011 -5.2266 1.0224 10 8 4.0239 -5.8190 0.8301 11 8 6.5205 -5.9353 0.8495 12 6 5.3172 -4.6028 2.6702 13 1 5.2815 -3.5376 2.8447 14 6 5.3757 -5.4746 3.7368 15 7 5.3883 -5.0091 4.9667 16 14 5.4384 -7.3170 3.4348 17 1 6.8537 -7.7522 3.3215 18 1 4.7915 -8.0265 4.5676 19 1 4.7197 -7.6370 2.1752 20 6 3.0073 -3.4059 -0.0038 21 6 1.9782 -2.4917 0.0002 22 6 2.2577 -1.1290 0.0005 23 1 -0.3634 0.0009 1.0275 24 1 -0.3633 0.8896 -0.5147 25 1 -0.3633 -0.8904 -0.5132 26 1 1.8837 2.1350 -0.0012 27 1 4.3937 1.4394 0.0011 28 1 5.6612 -1.3009 0.0038 29 1 6.1251 -3.8141 -0.5949 30 1 5.4298 -5.6224 5.7170 31 1 2.7844 -4.4626 -0.0085 32 1 0.9534 -2.8326 -0.0010 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192978852.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:08 Heat of formation + Delta-G solvation = -10.729061 kcal Electronic energy + Delta-G solvation = -19467.215616 eV Core-core repulsion = 16327.481320 eV Total energy + Delta-G solvation = -3139.734296 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.99112 -37.54192 -35.66068 -34.51631 -33.51376 -33.00030 -32.63635 -29.25742 -27.98048 -26.40205 -25.80110 -22.44681 -21.27269 -20.03826 -19.11824 -17.65447 -16.97752 -16.79162 -16.69357 -15.63791 -15.22550 -15.02120 -14.04575 -13.88954 -13.79212 -13.35050 -13.00150 -12.91599 -12.80345 -12.70381 -12.37704 -12.22405 -11.60387 -11.40374 -11.24561 -10.82492 -10.70858 -10.59292 -10.38999 -9.92396 -9.66951 -9.29501 -9.21297 -8.91883 -7.65393 -7.17494 -6.78322 -5.32191 1.44150 1.79392 2.15018 2.92652 2.96590 3.08237 3.17865 3.25249 3.95103 4.19410 4.26865 4.60850 4.72233 4.88768 5.00408 5.11511 5.25360 5.32495 5.40712 5.58499 5.77596 5.81557 5.86239 6.12616 6.21923 6.34114 6.50073 6.73114 7.01277 7.03860 7.11159 7.40140 7.49040 7.51171 7.81066 8.26756 8.71580 10.34131 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.027777 B = 0.005386 C = 0.005228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.787759 B = 5196.948257 C = 5354.851105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.493 5.493 3 C 0.044 3.956 4 C -0.205 4.205 5 C -0.094 4.094 6 C -0.096 4.096 7 C 0.150 3.850 8 N -1.062 6.062 9 S 2.671 3.329 10 O -1.002 7.002 11 O -1.006 7.006 12 C -1.008 5.008 13 H 0.124 0.876 14 C 0.152 3.848 15 N -0.820 5.820 16 Si 0.814 3.186 17 H -0.246 1.246 18 H -0.257 1.257 19 H -0.230 1.230 20 C -0.118 4.118 21 C -0.112 4.112 22 C 0.081 3.919 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.163 0.837 27 H 0.144 0.856 28 H 0.126 0.874 29 H 0.413 0.587 30 H 0.281 0.719 31 H 0.162 0.838 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.747 10.598 -9.654 16.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.178 5.178 3 C -0.081 4.081 4 C -0.231 4.231 5 C -0.099 4.099 6 C -0.119 4.119 7 C 0.052 3.948 8 N -0.809 5.809 9 S 2.774 3.226 10 O -0.991 6.991 11 O -0.996 6.996 12 C -1.143 5.143 13 H 0.142 0.858 14 C -0.067 4.067 15 N -0.449 5.449 16 Si 0.634 3.366 17 H -0.169 1.169 18 H -0.181 1.181 19 H -0.153 1.153 20 C -0.139 4.139 21 C -0.133 4.133 22 C -0.024 4.024 23 H 0.085 0.915 24 H 0.096 0.904 25 H 0.098 0.902 26 H 0.181 0.819 27 H 0.161 0.839 28 H 0.144 0.856 29 H 0.247 0.753 30 H 0.091 0.909 31 H 0.180 0.820 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.242 9.621 -9.644 15.922 hybrid contribution 0.386 -0.046 0.457 0.600 sum -7.855 9.576 -9.188 15.421 Atomic orbital electron populations 1.21864 0.77691 1.03728 1.02770 1.43776 1.05511 1.04361 1.64168 1.21669 0.90548 0.90834 1.05017 1.21615 0.95820 0.92829 1.12814 1.18941 0.91757 0.93240 1.05935 1.20408 0.98295 0.90594 1.02574 1.17066 0.87262 0.88348 1.02076 1.53364 1.29580 1.42536 1.55380 1.01617 0.73430 0.71530 0.76004 1.93394 1.42984 1.75244 1.87517 1.93414 1.47232 1.71191 1.87787 1.30321 1.66488 1.06149 1.11332 0.85807 1.24435 0.88734 0.99233 0.94315 1.69996 1.39359 1.36916 0.98678 0.87683 0.81877 0.84693 0.82300 1.16927 1.18144 1.15286 1.21664 0.90569 1.01975 0.99720 1.19802 0.99214 0.88632 1.05639 1.18291 0.90053 0.88170 1.05911 0.91541 0.90372 0.90248 0.81942 0.83867 0.85637 0.75273 0.90890 0.82049 0.86155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 11.03 59.84 0.66 1.35 16 2 N -0.49 -6.33 3.18 -121.76 -0.39 -6.72 16 3 C 0.04 0.51 11.29 -16.75 -0.19 0.32 16 4 C -0.21 -2.78 11.08 -37.66 -0.42 -3.20 16 5 C -0.09 -1.58 6.37 -105.14 -0.67 -2.25 16 6 C -0.10 -1.70 10.02 -39.06 -0.39 -2.09 16 7 C 0.15 2.94 6.16 -83.71 -0.52 2.42 16 8 N -1.06 -21.36 5.77 32.44 0.19 -21.17 16 9 S 2.67 67.17 4.12 -107.50 -0.44 66.72 16 10 O -1.00 -26.17 13.62 -57.17 -0.78 -26.95 16 11 O -1.01 -26.79 16.37 -57.17 -0.94 -27.72 16 12 C -1.01 -28.65 10.18 30.60 0.31 -28.33 16 13 H 0.12 3.64 8.06 -52.49 -0.42 3.21 16 14 C 0.15 4.42 5.47 -17.82 -0.10 4.33 16 15 N -0.82 -23.96 13.96 55.43 0.77 -23.18 16 16 Si 0.81 20.95 26.32 -169.99 -4.47 16.47 16 17 H -0.25 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.26 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.23 -5.96 5.89 56.52 0.33 -5.63 16 20 C -0.12 -2.29 9.19 -39.35 -0.36 -2.65 16 21 C -0.11 -1.87 9.94 -39.47 -0.39 -2.27 16 22 C 0.08 1.31 6.81 -83.89 -0.57 0.74 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 26 H 0.16 1.23 8.06 -52.48 -0.42 0.81 16 27 H 0.14 1.61 8.06 -52.49 -0.42 1.18 16 28 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 29 H 0.41 6.86 8.96 -34.47 -0.31 6.56 16 30 H 0.28 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.16 3.32 5.61 -52.49 -0.29 3.03 16 32 H 0.12 1.67 8.06 -52.48 -0.42 1.24 16 LS Contribution 288.51 15.07 4.35 4.35 Total: -1.00 -34.41 288.51 -7.53 -41.94 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -3.19 Total: 7.90 kcal Atomic # 6 Polarization: -29.00 SS G_CDS: -2.63 Total: -31.63 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: 0.57 Total: -51.08 kcal Atomic # 8 Polarization: -52.96 SS G_CDS: -1.71 Total: -54.68 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.47 Total: 16.47 kcal Atomic # 16 Polarization: 67.17 SS G_CDS: -0.44 Total: 66.72 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -34.41 -7.53 -41.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192978852.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.215 kcal (2) G-P(sol) polarization free energy of solvation -34.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds