Wall clock time and date at job start Tue Mar 31 2020 01:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36797 * 125.08158 * 2 1 4 4 C 1.34243 * 109.94304 * 179.97438 * 3 2 1 5 5 C 1.46501 * 107.02788 * 359.97438 * 4 3 2 6 6 C 1.39661 * 133.91905 * 180.02562 * 5 4 3 7 7 C 1.38209 * 119.58807 * 180.02562 * 6 5 4 8 8 N 1.39969 * 119.88623 * 179.97438 * 7 6 5 9 9 S 1.65605 * 119.99584 * 134.77278 * 8 7 6 10 10 O 1.42095 * 106.40296 * 50.81065 * 9 8 7 11 11 O 1.42100 * 106.39907 * 183.72890 * 9 8 7 12 12 C 1.76201 * 107.21606 * 297.26920 * 9 8 7 13 13 H 1.07996 * 120.00040 * 5.14892 * 12 9 8 14 14 C 1.37882 * 119.99580 * 185.15232 * 12 9 8 15 15 N 1.31514 * 119.99726 * 179.97438 * 14 12 9 16 16 Si 1.86796 * 120.00146 * 0.02562 * 14 12 9 17 17 H 1.48503 * 109.47445 * 89.99954 * 16 14 12 18 18 H 1.48497 * 109.47098 * 209.99889 * 16 14 12 19 19 H 1.48507 * 109.47404 * 329.99610 * 16 14 12 20 20 C 1.39426 * 120.22598 * 0.27433 * 7 6 5 21 21 C 1.37655 * 120.59710 * 359.46066 * 20 7 6 22 22 C 1.37949 * 125.07614 * 179.97438 * 2 1 3 23 23 H 1.08993 * 109.47869 * 270.05027 * 1 2 3 24 24 H 1.09004 * 109.46671 * 30.05115 * 1 2 3 25 25 H 1.09006 * 109.46872 * 150.04428 * 1 2 3 26 26 H 1.08003 * 125.02555 * 359.91942 * 3 2 1 27 27 H 1.07999 * 126.48455 * 180.02562 * 4 3 2 28 28 H 1.08001 * 120.20537 * 0.02562 * 6 5 4 29 29 H 0.96999 * 120.00462 * 314.49209 * 8 7 6 30 30 H 0.97000 * 119.99519 * 180.02562 * 15 14 12 31 31 H 1.07995 * 119.69993 * 179.70676 * 20 7 6 32 32 H 1.08005 * 119.98431 * 180.25645 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2512 1.1195 0.0000 4 6 3.5470 0.7689 0.0006 5 6 3.5953 -0.6953 0.0016 6 6 4.6327 -1.6304 0.0029 7 6 4.3349 -2.9800 0.0031 8 7 5.3697 -3.9225 0.0039 9 16 5.3011 -5.2266 1.0224 10 8 4.0239 -5.8190 0.8301 11 8 6.5205 -5.9353 0.8495 12 6 5.3172 -4.6028 2.6702 13 1 5.2815 -3.5376 2.8447 14 6 5.3757 -5.4746 3.7368 15 7 5.3883 -5.0091 4.9667 16 14 5.4384 -7.3170 3.4348 17 1 6.8537 -7.7522 3.3215 18 1 4.7915 -8.0265 4.5676 19 1 4.7197 -7.6370 2.1752 20 6 3.0073 -3.4059 -0.0038 21 6 1.9782 -2.4917 0.0002 22 6 2.2577 -1.1290 0.0005 23 1 -0.3634 0.0009 1.0275 24 1 -0.3633 0.8896 -0.5147 25 1 -0.3633 -0.8904 -0.5132 26 1 1.8837 2.1350 -0.0012 27 1 4.3937 1.4394 0.0011 28 1 5.6612 -1.3009 0.0038 29 1 6.1251 -3.8141 -0.5949 30 1 5.4298 -5.6224 5.7170 31 1 2.7844 -4.4626 -0.0085 32 1 0.9534 -2.8326 -0.0010 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192978852.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:07 Heat of formation + Delta-G solvation = -35.948131 kcal Electronic energy + Delta-G solvation = -19468.309197 eV Core-core repulsion = 16327.481320 eV Total energy + Delta-G solvation = -3140.827877 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.10919 -38.91469 -37.68880 -36.58698 -35.23607 -34.88025 -33.69076 -30.45120 -29.23085 -28.58213 -26.76669 -23.69818 -22.64234 -21.18149 -20.99519 -19.55336 -18.76553 -18.39083 -17.85592 -17.27638 -16.76668 -16.11807 -15.98202 -15.56106 -15.10304 -14.92306 -14.89366 -14.36840 -13.96495 -13.77028 -13.58619 -13.42074 -13.29772 -13.07470 -12.99981 -12.68622 -12.48641 -12.46623 -11.97153 -11.71379 -11.35706 -11.32622 -10.93522 -10.44992 -8.97234 -8.90735 -8.39111 -7.54005 -0.06091 0.21748 0.67500 1.04739 1.14342 1.19330 1.87756 1.88187 2.01944 2.37860 2.43753 2.90810 3.19932 3.81127 3.94351 4.04195 4.08832 4.18325 4.36448 4.49693 4.53798 4.68309 4.78546 4.79601 4.95247 5.11437 5.21633 5.34900 5.41490 5.62376 5.81423 5.86041 6.00986 6.17725 6.39261 6.51120 6.53167 8.21272 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.027777 B = 0.005386 C = 0.005228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.787759 B = 5196.948257 C = 5354.851105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.491 5.491 3 C 0.069 3.931 4 C -0.231 4.231 5 C -0.115 4.115 6 C -0.102 4.102 7 C 0.118 3.882 8 N -1.049 6.049 9 S 2.697 3.303 10 O -1.014 7.014 11 O -1.022 7.022 12 C -1.032 5.032 13 H 0.100 0.900 14 C 0.107 3.893 15 N -0.853 5.853 16 Si 0.839 3.161 17 H -0.238 1.238 18 H -0.219 1.219 19 H -0.236 1.236 20 C -0.151 4.151 21 C -0.106 4.106 22 C 0.065 3.935 23 H 0.074 0.926 24 H 0.113 0.887 25 H 0.083 0.917 26 H 0.213 0.787 27 H 0.163 0.837 28 H 0.138 0.862 29 H 0.428 0.572 30 H 0.292 0.708 31 H 0.143 0.857 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.261 12.335 -10.336 18.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.175 5.175 3 C -0.057 4.057 4 C -0.256 4.256 5 C -0.121 4.121 6 C -0.124 4.124 7 C 0.022 3.978 8 N -0.800 5.800 9 S 2.798 3.202 10 O -1.003 7.003 11 O -1.012 7.012 12 C -1.165 5.165 13 H 0.118 0.882 14 C -0.109 4.109 15 N -0.483 5.483 16 Si 0.656 3.344 17 H -0.161 1.161 18 H -0.142 1.142 19 H -0.159 1.159 20 C -0.173 4.173 21 C -0.127 4.127 22 C -0.041 4.041 23 H 0.092 0.908 24 H 0.131 0.869 25 H 0.102 0.898 26 H 0.230 0.770 27 H 0.181 0.819 28 H 0.156 0.844 29 H 0.265 0.735 30 H 0.103 0.897 31 H 0.161 0.839 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.770 11.369 -10.298 18.187 hybrid contribution 0.732 -0.319 0.613 1.006 sum -9.038 11.050 -9.685 17.251 Atomic orbital electron populations 1.22230 0.74918 1.05819 1.03950 1.44174 1.07265 1.03475 1.62591 1.22472 0.89746 0.92328 1.01147 1.21952 0.97806 0.91261 1.14562 1.19426 0.91902 0.95116 1.05634 1.20587 0.99531 0.90110 1.02220 1.17262 0.87049 0.88885 1.04606 1.52780 1.30661 1.41980 1.54611 1.00718 0.72686 0.71848 0.74938 1.93379 1.43422 1.76102 1.87425 1.93380 1.47803 1.72179 1.87853 1.30812 1.66398 1.05275 1.14010 0.88211 1.25208 0.88549 1.02820 0.94369 1.70021 1.40114 1.38665 0.99469 0.87292 0.82675 0.81036 0.83415 1.16085 1.14168 1.15880 1.21603 0.91454 1.01671 1.02565 1.19992 0.99718 0.88913 1.04105 1.18432 0.90863 0.88917 1.05936 0.90757 0.86856 0.89781 0.77004 0.81935 0.84389 0.73496 0.89736 0.83916 0.83706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.92 11.03 127.77 1.41 2.32 16 2 N -0.49 -10.96 3.18 -539.15 -1.72 -12.68 16 3 C 0.07 1.30 11.29 83.01 0.94 2.24 16 4 C -0.23 -5.68 11.08 23.51 0.26 -5.42 16 5 C -0.12 -3.78 6.37 -20.20 -0.13 -3.91 16 6 C -0.10 -3.66 10.02 22.61 0.23 -3.43 16 7 C 0.12 4.79 6.16 38.12 0.23 5.02 16 8 N -1.05 -43.38 5.77 -51.29 -0.30 -43.67 16 9 S 2.70 138.44 4.12 -56.49 -0.23 138.21 16 10 O -1.01 -54.10 13.62 -128.00 -1.74 -55.84 16 11 O -1.02 -54.84 16.37 -128.00 -2.10 -56.94 16 12 C -1.03 -60.52 10.18 67.74 0.69 -59.83 16 13 H 0.10 6.16 8.06 -2.91 -0.02 6.13 16 14 C 0.11 6.32 5.47 84.66 0.46 6.79 16 15 N -0.85 -50.54 13.96 21.45 0.30 -50.24 16 16 Si 0.84 42.22 26.32 68.60 1.81 44.02 16 17 H -0.24 -11.59 7.11 99.48 0.71 -10.88 16 18 H -0.22 -9.66 7.11 99.48 0.71 -8.95 16 19 H -0.24 -12.05 5.89 99.48 0.59 -11.47 16 20 C -0.15 -6.06 9.19 22.42 0.21 -5.86 16 21 C -0.11 -3.55 9.94 22.34 0.22 -3.33 16 22 C 0.07 2.03 6.81 38.97 0.27 2.29 16 23 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.08 1.03 8.10 -2.38 -0.02 1.01 16 26 H 0.21 1.85 8.06 -2.91 -0.02 1.83 16 27 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 28 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 29 H 0.43 14.53 8.96 -96.74 -0.87 13.66 16 30 H 0.29 15.48 8.31 -92.71 -0.77 14.71 16 31 H 0.14 6.16 5.61 -2.91 -0.02 6.14 16 32 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -76.09 288.51 0.98 -75.11 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: 0.17 Total: 25.15 kcal Atomic # 6 Polarization: -67.90 SS G_CDS: 4.79 Total: -63.12 kcal Atomic # 7 Polarization: -104.88 SS G_CDS: -1.71 Total: -106.59 kcal Atomic # 8 Polarization: -108.94 SS G_CDS: -3.84 Total: -112.78 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.81 Total: 44.02 kcal Atomic # 16 Polarization: 138.44 SS G_CDS: -0.23 Total: 138.21 kcal Total: -76.09 0.98 -75.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192978852.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.163 kcal (2) G-P(sol) polarization free energy of solvation -76.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds