Wall clock time and date at job start Tue Mar 31 2020 01:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36963 * 125.07067 * 2 1 4 4 C 1.34212 * 109.88120 * 179.97438 * 3 2 1 5 5 C 1.46472 * 106.98875 * 0.02562 * 4 3 2 6 6 C 1.37690 * 125.06880 * 180.02562 * 2 1 3 7 7 C 1.39210 * 133.36628 * 359.96977 * 6 2 1 8 8 C 1.37774 * 120.06572 * 180.08313 * 7 6 2 9 9 C 1.38707 * 120.73488 * 359.96809 * 8 7 6 10 10 C 1.38364 * 120.29573 * 0.02562 * 9 8 7 11 11 N 1.39571 * 120.24059 * 180.02562 * 10 9 8 12 12 S 1.65600 * 120.00231 * 327.08419 * 11 10 9 13 13 O 1.42094 * 106.40573 * 181.21340 * 12 11 10 14 14 O 1.42106 * 106.40090 * 314.13506 * 12 11 10 15 15 C 1.76199 * 107.21902 * 67.67267 * 12 11 10 16 16 H 1.08004 * 120.00041 * 0.02562 * 15 12 11 17 17 C 1.37875 * 120.00285 * 180.02562 * 15 12 11 18 18 N 1.31513 * 119.99731 * 359.97438 * 17 15 12 19 19 Si 1.86802 * 120.00272 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.47485 * 89.99200 * 19 17 15 21 21 H 1.48497 * 109.47111 * 209.99525 * 19 17 15 22 22 H 1.48502 * 109.46756 * 329.99280 * 19 17 15 23 23 H 1.09001 * 109.46628 * 89.97798 * 1 2 3 24 24 H 1.08996 * 109.47014 * 209.97414 * 1 2 3 25 25 H 1.09002 * 109.47297 * 329.98040 * 1 2 3 26 26 H 1.07998 * 125.05555 * 359.97438 * 3 2 1 27 27 H 1.07997 * 126.50337 * 179.97438 * 4 3 2 28 28 H 1.08005 * 119.96983 * 0.34871 * 7 6 2 29 29 H 1.07997 * 119.63341 * 179.97438 * 8 7 6 30 30 H 1.08007 * 119.85291 * 180.02562 * 9 8 7 31 31 H 0.97001 * 119.99821 * 147.08228 * 11 10 9 32 32 H 0.97002 * 119.99710 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2520 1.1210 0.0000 4 6 3.5472 0.7693 0.0006 5 6 3.5932 -0.6947 0.0003 6 6 2.2561 -1.1269 -0.0005 7 6 1.9770 -2.4908 -0.0006 8 6 3.0068 -3.4060 0.0006 9 6 4.3287 -2.9858 0.0012 10 6 4.6320 -1.6359 0.0011 11 7 5.9625 -1.2143 0.0012 12 16 7.1155 -2.1119 0.7806 13 8 8.3425 -1.4127 0.6234 14 8 6.5709 -2.4506 2.0486 15 6 7.2874 -3.6242 -0.1071 16 1 6.6869 -3.8056 -0.9863 17 6 8.1885 -4.5760 0.3206 18 7 8.9201 -4.3550 1.3909 19 14 8.3713 -6.1791 -0.6209 20 1 9.4125 -6.0223 -1.6680 21 1 8.7699 -7.2604 0.3156 22 1 7.0766 -6.5288 -1.2586 23 1 -0.3632 0.0004 -1.0277 24 1 -0.3633 -0.8902 0.5134 25 1 -0.3634 0.8898 0.5141 26 1 1.8849 2.1366 -0.0004 27 1 4.3947 1.4388 0.0003 28 1 0.9523 -2.8318 -0.0059 29 1 2.7823 -4.4624 0.0009 30 1 5.1249 -3.7157 0.0016 31 1 6.2119 -0.3956 -0.4554 32 1 9.5543 -5.0245 1.6916 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192980323.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:10 Heat of formation + Delta-G solvation = -25.322124 kcal Electronic energy + Delta-G solvation = -19594.957025 eV Core-core repulsion = 16454.589926 eV Total energy + Delta-G solvation = -3140.367099 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.98586 -37.26143 -35.24692 -34.11872 -34.01817 -33.12309 -32.27054 -29.00600 -27.76636 -26.44602 -25.91957 -22.16022 -21.49344 -20.01712 -18.85997 -17.54348 -17.42467 -16.43973 -15.84565 -15.22346 -15.16606 -15.09284 -14.61193 -14.08402 -13.51522 -13.46419 -13.17270 -12.80421 -12.51169 -12.19835 -12.07785 -11.76890 -11.44732 -11.22059 -10.98173 -10.84772 -10.59184 -10.45194 -10.36059 -10.24139 -10.07879 -9.25941 -8.91929 -8.64358 -7.85055 -6.95796 -6.72501 -5.36398 1.54599 2.05585 2.20102 2.96611 2.98017 3.07139 3.14129 3.20560 4.03784 4.32547 4.58742 4.62591 4.73746 4.93798 5.09368 5.11605 5.29076 5.46293 5.65308 5.69090 5.76215 5.89104 5.99710 6.21457 6.33179 6.51946 6.55848 6.94510 7.03637 7.09531 7.17581 7.28937 7.47992 7.58279 7.90579 7.92268 8.83882 10.20489 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.028357 B = 0.005758 C = 0.005049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.174235 B = 4861.834557 C = 5543.835194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.495 5.495 3 C 0.031 3.969 4 C -0.188 4.188 5 C -0.144 4.144 6 C 0.121 3.879 7 C -0.175 4.175 8 C -0.056 4.056 9 C -0.207 4.207 10 C 0.246 3.754 11 N -1.066 6.066 12 S 2.703 3.297 13 O -0.999 6.999 14 O -0.989 6.989 15 C -1.020 5.020 16 H 0.111 0.889 17 C 0.134 3.866 18 N -0.842 5.842 19 Si 0.922 3.078 20 H -0.267 1.267 21 H -0.275 1.275 22 H -0.260 1.260 23 H 0.064 0.936 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.163 0.837 27 H 0.143 0.857 28 H 0.113 0.887 29 H 0.127 0.873 30 H 0.161 0.839 31 H 0.412 0.588 32 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.113 5.727 -4.729 16.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.180 5.180 3 C -0.093 4.093 4 C -0.214 4.214 5 C -0.151 4.151 6 C 0.014 3.986 7 C -0.197 4.197 8 C -0.076 4.076 9 C -0.230 4.230 10 C 0.146 3.854 11 N -0.806 5.806 12 S 2.803 3.197 13 O -0.990 6.990 14 O -0.979 6.979 15 C -1.153 5.153 16 H 0.129 0.871 17 C -0.085 4.085 18 N -0.471 5.471 19 Si 0.746 3.254 20 H -0.192 1.192 21 H -0.200 1.200 22 H -0.184 1.184 23 H 0.082 0.918 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.181 0.819 27 H 0.161 0.839 28 H 0.131 0.869 29 H 0.145 0.855 30 H 0.179 0.821 31 H 0.244 0.756 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.808 5.902 -3.695 16.363 hybrid contribution 0.048 -0.687 -1.091 1.290 sum -14.760 5.214 -4.786 16.369 Atomic orbital electron populations 1.21827 0.77749 1.03775 1.02445 1.43744 1.05430 1.04361 1.64459 1.21619 0.90370 0.90758 1.06520 1.21580 0.95892 0.92864 1.11044 1.18942 0.91703 0.93230 1.11252 1.18006 0.89276 0.88135 1.03135 1.19793 0.99041 0.88952 1.11913 1.20580 0.91296 0.98750 0.96939 1.21659 0.99028 0.94591 1.07694 1.16816 0.82522 0.91648 0.94405 1.54173 1.17748 1.39093 1.69576 1.01003 0.70393 0.74650 0.73610 1.93388 1.42458 1.76019 1.87118 1.93408 1.78901 1.84524 1.41048 1.30565 1.33762 1.23174 1.27840 0.87085 1.24754 0.91126 0.99495 0.93087 1.69894 1.19968 1.36615 1.20625 0.86130 0.79695 0.79872 0.79737 1.19175 1.19953 1.18377 0.91789 0.90329 0.90380 0.81932 0.83930 0.86938 0.85483 0.82134 0.75567 0.89736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 11.03 59.85 0.66 1.35 16 2 N -0.49 -6.47 3.18 -121.79 -0.39 -6.86 16 3 C 0.03 0.39 11.29 -16.68 -0.19 0.20 16 4 C -0.19 -2.89 11.08 -37.69 -0.42 -3.31 16 5 C -0.14 -2.66 6.29 -104.99 -0.66 -3.32 16 6 C 0.12 1.98 6.80 -84.01 -0.57 1.41 16 7 C -0.17 -2.70 9.94 -39.39 -0.39 -3.09 16 8 C -0.06 -0.95 10.00 -39.58 -0.40 -1.34 16 9 C -0.21 -4.27 8.93 -39.36 -0.35 -4.62 16 10 C 0.25 5.13 6.22 -83.56 -0.52 4.61 16 11 N -1.07 -22.99 5.80 32.53 0.19 -22.80 16 12 S 2.70 72.79 4.63 -107.50 -0.50 72.29 16 13 O -1.00 -29.36 18.02 -57.17 -1.03 -30.39 16 14 O -0.99 -29.43 17.44 -57.17 -1.00 -30.43 16 15 C -1.02 -27.47 7.58 30.60 0.23 -27.24 16 16 H 0.11 2.72 6.90 -52.48 -0.36 2.36 16 17 C 0.13 3.66 5.46 -17.82 -0.10 3.56 16 18 N -0.84 -24.38 13.19 55.43 0.73 -23.65 16 19 Si 0.92 20.11 29.54 -169.99 -5.02 15.09 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 22 H -0.26 -5.42 7.11 56.52 0.40 -5.01 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 25 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 27 H 0.14 1.92 8.06 -52.49 -0.42 1.50 16 28 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 29 H 0.13 1.78 8.06 -52.49 -0.42 1.35 16 30 H 0.16 3.57 4.47 -52.48 -0.23 3.34 16 31 H 0.41 7.57 8.95 -34.47 -0.31 7.26 16 32 H 0.29 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 292.99 15.07 4.42 4.42 Total: -1.00 -36.28 292.99 -8.30 -44.58 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -3.00 Total: 9.55 kcal Atomic # 6 Polarization: -29.09 SS G_CDS: -2.70 Total: -31.80 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: 0.53 Total: -53.31 kcal Atomic # 8 Polarization: -58.80 SS G_CDS: -2.03 Total: -60.82 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 16 Polarization: 72.79 SS G_CDS: -0.50 Total: 72.29 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -36.28 -8.30 -44.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192980323.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.258 kcal (2) G-P(sol) polarization free energy of solvation -36.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds