Wall clock time and date at job start Tue Mar 31 2020 01:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36963 * 125.07067 * 2 1 4 4 C 1.34212 * 109.88120 * 179.97438 * 3 2 1 5 5 C 1.46472 * 106.98875 * 0.02562 * 4 3 2 6 6 C 1.37690 * 125.06880 * 180.02562 * 2 1 3 7 7 C 1.39210 * 133.36628 * 359.96977 * 6 2 1 8 8 C 1.37774 * 120.06572 * 180.08313 * 7 6 2 9 9 C 1.38707 * 120.73488 * 359.96809 * 8 7 6 10 10 C 1.38364 * 120.29573 * 0.02562 * 9 8 7 11 11 N 1.39571 * 120.24059 * 180.02562 * 10 9 8 12 12 S 1.65600 * 120.00231 * 327.08419 * 11 10 9 13 13 O 1.42094 * 106.40573 * 181.21340 * 12 11 10 14 14 O 1.42106 * 106.40090 * 314.13506 * 12 11 10 15 15 C 1.76199 * 107.21902 * 67.67267 * 12 11 10 16 16 H 1.08004 * 120.00041 * 0.02562 * 15 12 11 17 17 C 1.37875 * 120.00285 * 180.02562 * 15 12 11 18 18 N 1.31513 * 119.99731 * 359.97438 * 17 15 12 19 19 Si 1.86802 * 120.00272 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.47485 * 89.99200 * 19 17 15 21 21 H 1.48497 * 109.47111 * 209.99525 * 19 17 15 22 22 H 1.48502 * 109.46756 * 329.99280 * 19 17 15 23 23 H 1.09001 * 109.46628 * 89.97798 * 1 2 3 24 24 H 1.08996 * 109.47014 * 209.97414 * 1 2 3 25 25 H 1.09002 * 109.47297 * 329.98040 * 1 2 3 26 26 H 1.07998 * 125.05555 * 359.97438 * 3 2 1 27 27 H 1.07997 * 126.50337 * 179.97438 * 4 3 2 28 28 H 1.08005 * 119.96983 * 0.34871 * 7 6 2 29 29 H 1.07997 * 119.63341 * 179.97438 * 8 7 6 30 30 H 1.08007 * 119.85291 * 180.02562 * 9 8 7 31 31 H 0.97001 * 119.99821 * 147.08228 * 11 10 9 32 32 H 0.97002 * 119.99710 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2520 1.1210 0.0000 4 6 3.5472 0.7693 0.0006 5 6 3.5932 -0.6947 0.0003 6 6 2.2561 -1.1269 -0.0005 7 6 1.9770 -2.4908 -0.0006 8 6 3.0068 -3.4060 0.0006 9 6 4.3287 -2.9858 0.0012 10 6 4.6320 -1.6359 0.0011 11 7 5.9625 -1.2143 0.0012 12 16 7.1155 -2.1119 0.7806 13 8 8.3425 -1.4127 0.6234 14 8 6.5709 -2.4506 2.0486 15 6 7.2874 -3.6242 -0.1071 16 1 6.6869 -3.8056 -0.9863 17 6 8.1885 -4.5760 0.3206 18 7 8.9201 -4.3550 1.3909 19 14 8.3713 -6.1791 -0.6209 20 1 9.4125 -6.0223 -1.6680 21 1 8.7699 -7.2604 0.3156 22 1 7.0766 -6.5288 -1.2586 23 1 -0.3632 0.0004 -1.0277 24 1 -0.3633 -0.8902 0.5134 25 1 -0.3634 0.8898 0.5141 26 1 1.8849 2.1366 -0.0004 27 1 4.3947 1.4388 0.0003 28 1 0.9523 -2.8318 -0.0059 29 1 2.7823 -4.4624 0.0009 30 1 5.1249 -3.7157 0.0016 31 1 6.2119 -0.3956 -0.4554 32 1 9.5543 -5.0245 1.6916 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192980323.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:10 Heat of formation + Delta-G solvation = -52.930385 kcal Electronic energy + Delta-G solvation = -19596.154209 eV Core-core repulsion = 16454.589926 eV Total energy + Delta-G solvation = -3141.564283 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.14148 -38.63319 -37.45011 -36.27008 -35.62054 -35.15505 -33.29092 -30.31406 -29.09272 -28.37089 -26.99326 -23.44649 -22.84165 -21.31416 -20.75662 -19.43719 -18.78900 -18.24168 -17.21773 -17.02510 -16.62239 -16.15177 -15.97511 -15.93599 -15.51682 -14.78036 -14.18476 -14.06213 -13.88950 -13.58039 -13.50801 -13.03322 -13.01126 -12.88525 -12.75135 -12.61031 -12.52234 -12.29123 -12.16449 -11.96956 -11.58841 -11.23263 -10.92342 -10.00349 -9.10084 -8.78865 -8.22730 -7.50865 0.09824 0.33643 0.71235 1.36263 1.36900 1.54038 1.85632 2.01368 2.21024 2.56321 2.78877 2.96885 3.62002 3.91962 3.97638 4.04377 4.19847 4.34129 4.39864 4.49997 4.56502 4.67443 4.80866 4.84501 5.04834 5.09977 5.15689 5.27901 5.56634 5.69149 5.81080 5.82295 5.90692 6.19404 6.41348 6.54541 6.74121 8.19655 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.028357 B = 0.005758 C = 0.005049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.174235 B = 4861.834557 C = 5543.835194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.489 5.489 3 C 0.064 3.936 4 C -0.233 4.233 5 C -0.166 4.166 6 C 0.104 3.896 7 C -0.153 4.153 8 C -0.072 4.072 9 C -0.234 4.234 10 C 0.203 3.797 11 N -1.056 6.056 12 S 2.710 3.290 13 O -1.037 7.037 14 O -1.029 7.029 15 C -1.030 5.030 16 H 0.128 0.872 17 C 0.073 3.927 18 N -0.892 5.892 19 Si 0.994 3.006 20 H -0.255 1.255 21 H -0.262 1.262 22 H -0.243 1.243 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.107 0.893 26 H 0.213 0.787 27 H 0.148 0.852 28 H 0.154 0.846 29 H 0.154 0.846 30 H 0.135 0.865 31 H 0.422 0.578 32 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.601 5.781 -6.049 20.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.172 5.172 3 C -0.061 4.061 4 C -0.258 4.258 5 C -0.174 4.174 6 C -0.004 4.004 7 C -0.174 4.174 8 C -0.091 4.091 9 C -0.257 4.257 10 C 0.105 3.895 11 N -0.801 5.801 12 S 2.812 3.188 13 O -1.027 7.027 14 O -1.019 7.019 15 C -1.164 5.164 16 H 0.146 0.854 17 C -0.141 4.141 18 N -0.523 5.523 19 Si 0.811 3.189 20 H -0.179 1.179 21 H -0.186 1.186 22 H -0.166 1.166 23 H 0.100 0.900 24 H 0.106 0.894 25 H 0.125 0.875 26 H 0.230 0.770 27 H 0.166 0.834 28 H 0.172 0.828 29 H 0.172 0.828 30 H 0.153 0.847 31 H 0.257 0.743 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -18.341 5.990 -5.009 19.934 hybrid contribution 0.902 -0.542 -0.684 1.255 sum -17.439 5.449 -5.694 19.137 Atomic orbital electron populations 1.22245 0.74363 1.05769 1.04264 1.44148 1.07381 1.03244 1.62471 1.22343 0.89263 0.92492 1.01995 1.21839 0.97955 0.91618 1.14406 1.19310 0.92198 0.94742 1.11197 1.18269 0.89167 0.89565 1.03425 1.20205 1.00477 0.88338 1.08402 1.20871 0.90145 1.00641 0.97488 1.21682 1.00251 0.94224 1.09548 1.17098 0.82145 0.92617 0.97626 1.53422 1.17869 1.39053 1.69717 1.00414 0.70068 0.74912 0.73402 1.93321 1.44906 1.76819 1.87649 1.93338 1.79550 1.85246 1.43759 1.30791 1.34144 1.23211 1.28254 0.85446 1.26048 0.90289 1.03806 0.93931 1.69989 1.21153 1.38516 1.22615 0.85074 0.80629 0.74645 0.78508 1.17949 1.18575 1.16629 0.89973 0.89447 0.87484 0.77048 0.83382 0.82817 0.82848 0.84698 0.74324 0.88899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.81 11.03 127.77 1.41 2.22 16 2 N -0.49 -10.81 3.18 -539.23 -1.72 -12.53 16 3 C 0.06 1.37 11.29 82.97 0.94 2.31 16 4 C -0.23 -6.92 11.08 23.50 0.26 -6.66 16 5 C -0.17 -6.16 6.29 -20.11 -0.13 -6.29 16 6 C 0.10 3.17 6.80 39.01 0.27 3.44 16 7 C -0.15 -4.31 9.94 22.39 0.22 -4.09 16 8 C -0.07 -2.38 10.00 22.27 0.22 -2.16 16 9 C -0.23 -10.00 8.93 22.41 0.20 -9.80 16 10 C 0.20 8.81 6.22 38.41 0.24 9.04 16 11 N -1.06 -48.23 5.80 -50.98 -0.30 -48.53 16 12 S 2.71 154.30 4.63 -56.49 -0.26 154.04 16 13 O -1.04 -64.39 18.02 -128.00 -2.31 -66.70 16 14 O -1.03 -65.01 17.44 -128.00 -2.23 -67.24 16 15 C -1.03 -57.52 7.58 67.73 0.51 -57.01 16 16 H 0.13 6.45 6.90 -2.91 -0.02 6.43 16 17 C 0.07 4.05 5.46 84.65 0.46 4.51 16 18 N -0.89 -53.50 13.19 21.45 0.28 -53.22 16 19 Si 0.99 41.16 29.54 68.60 2.03 43.19 16 20 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 21 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 22 H -0.24 -9.33 7.11 99.48 0.71 -8.62 16 23 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.09 0.86 8.10 -2.39 -0.02 0.84 16 25 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.21 2.33 8.06 -2.91 -0.02 2.31 16 27 H 0.15 4.00 8.06 -2.91 -0.02 3.97 16 28 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 29 H 0.15 4.06 8.06 -2.91 -0.02 4.04 16 30 H 0.14 6.33 4.47 -2.91 -0.01 6.32 16 31 H 0.42 16.63 8.95 -96.74 -0.87 15.76 16 32 H 0.30 16.12 8.31 -92.71 -0.77 15.35 16 Total: -1.00 -84.00 292.99 0.40 -83.60 By element: Atomic # 1 Polarization: 31.56 SS G_CDS: 0.30 Total: 31.86 kcal Atomic # 6 Polarization: -69.08 SS G_CDS: 4.61 Total: -64.47 kcal Atomic # 7 Polarization: -112.55 SS G_CDS: -1.73 Total: -114.28 kcal Atomic # 8 Polarization: -129.40 SS G_CDS: -4.54 Total: -133.94 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Atomic # 16 Polarization: 154.30 SS G_CDS: -0.26 Total: 154.04 kcal Total: -84.00 0.40 -83.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192980323.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.669 kcal (2) G-P(sol) polarization free energy of solvation -84.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds