Wall clock time and date at job start Tue Mar 31 2020 01:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37836 * 120.04173 * 2 1 4 4 C 1.38526 * 120.34717 * 180.02562 * 3 2 1 5 5 C 1.38063 * 120.41999 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.96280 * 180.02562 * 5 4 3 7 7 C 1.38840 * 120.07030 * 359.97438 * 5 4 3 8 8 N 1.39031 * 120.17102 * 180.02562 * 7 5 4 9 9 S 1.65607 * 120.00360 * 246.99910 * 8 7 5 10 10 O 1.42098 * 106.39918 * 313.02339 * 9 8 7 11 11 O 1.42097 * 106.40432 * 180.10470 * 9 8 7 12 12 C 1.76199 * 107.21928 * 66.56152 * 9 8 7 13 13 H 1.08004 * 119.99830 * 0.02562 * 12 9 8 14 14 C 1.37869 * 120.00006 * 180.02562 * 12 9 8 15 15 N 1.31515 * 120.00065 * 0.02562 * 14 12 9 16 16 Si 1.86805 * 119.99977 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.46980 * 60.00386 * 16 14 12 18 18 H 1.48500 * 109.47011 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47348 * 300.00327 * 16 14 12 20 20 C 1.39694 * 120.04051 * 180.30662 * 2 1 3 21 21 C 1.43205 * 120.20565 * 359.97438 * 20 2 1 22 22 N 3.48656 * 80.50710 * 180.30344 * 2 1 3 23 23 H 1.08992 * 109.47682 * 89.99761 * 1 2 3 24 24 H 1.09004 * 109.46942 * 210.00357 * 1 2 3 25 25 H 1.09003 * 109.46722 * 329.99509 * 1 2 3 26 26 H 1.07999 * 119.82492 * 0.02586 * 3 2 1 27 27 H 1.07998 * 119.78823 * 180.02562 * 4 3 2 28 28 H 1.09001 * 109.47142 * 269.97097 * 6 5 4 29 29 H 1.08997 * 109.47430 * 29.97555 * 6 5 4 30 30 H 1.09006 * 109.46918 * 149.97363 * 6 5 4 31 31 H 0.96999 * 120.00109 * 66.99761 * 8 7 5 32 32 H 0.97005 * 119.99986 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1932 0.0000 4 6 3.5823 1.2006 -0.0005 5 6 4.2877 0.0138 -0.0016 6 6 5.7945 0.0338 -0.0016 7 6 3.6103 -1.1982 -0.0016 8 7 4.3185 -2.3946 -0.0022 9 16 4.2576 -3.3923 -1.3225 10 8 2.8868 -3.5008 -1.6805 11 8 5.0717 -4.5156 -1.0145 12 6 5.0533 -2.5501 -2.6499 13 1 5.4645 -1.5636 -2.4943 14 6 5.1511 -3.1504 -3.8872 15 7 4.6500 -4.3514 -4.0768 16 14 5.9941 -2.2571 -5.2947 17 1 7.4027 -1.9675 -4.9242 18 1 5.9679 -3.1111 -6.5093 19 1 5.2826 -0.9830 -5.5693 20 6 2.2063 -1.2093 -0.0065 21 6 1.4956 -2.4525 -0.0126 22 7 0.9320 -3.4388 -0.0182 23 1 -0.3634 0.0000 -1.0275 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6549 2.1272 0.0004 27 1 4.1138 2.1407 -0.0001 28 1 6.1578 0.0390 -1.0293 29 1 6.1460 0.9283 0.5126 30 1 6.1697 -0.8515 0.5119 31 1 4.8483 -2.6449 0.7708 32 1 4.7185 -4.7736 -4.9475 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192985412.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:45 Heat of formation + Delta-G solvation = -40.059536 kcal Electronic energy + Delta-G solvation = -20052.996917 eV Core-core repulsion = 16911.990756 eV Total energy + Delta-G solvation = -3141.006161 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.80136 -35.86287 -35.31202 -34.99665 -34.04696 -33.19022 -32.87247 -29.32838 -29.13506 -26.18676 -24.83835 -23.36721 -20.97768 -19.19073 -17.93342 -17.52513 -16.85726 -16.33184 -15.79495 -15.04156 -14.52094 -14.01298 -13.94955 -13.66633 -13.26910 -13.09165 -12.65795 -12.55306 -12.43737 -12.26117 -11.96259 -11.74950 -11.51548 -11.35084 -11.25796 -11.22975 -11.05979 -10.69072 -10.65558 -10.36695 -10.15479 -9.62846 -9.27758 -8.88830 -8.40700 -8.12985 -6.74602 -5.37938 1.07451 1.37559 2.18748 3.05438 3.10136 3.14787 3.43102 3.48948 4.00382 4.24221 4.46161 4.55358 4.61304 4.88328 4.95245 5.24853 5.34742 5.45161 5.65773 5.69354 5.70425 5.79286 5.85107 5.90769 6.10393 6.34715 6.36506 6.39710 6.51182 6.58885 6.71229 7.01779 7.27594 7.69914 7.90234 8.36300 8.83339 10.19742 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.017575 B = 0.008148 C = 0.007105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.773571 B = 3435.666349 C = 3940.011987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.042 4.042 3 C -0.127 4.127 4 C -0.087 4.087 5 C -0.094 4.094 6 C -0.114 4.114 7 C 0.210 3.790 8 N -1.083 6.083 9 S 2.696 3.304 10 O -0.984 6.984 11 O -0.997 6.997 12 C -1.013 5.013 13 H 0.105 0.895 14 C 0.134 3.866 15 N -0.843 5.843 16 Si 0.921 3.079 17 H -0.263 1.263 18 H -0.276 1.276 19 H -0.263 1.263 20 C -0.018 4.018 21 C 0.259 3.741 22 N -0.399 5.399 23 H 0.078 0.922 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.130 0.870 27 H 0.129 0.871 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.414 0.586 32 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.007 14.280 7.561 16.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.045 4.045 3 C -0.145 4.145 4 C -0.106 4.106 5 C -0.097 4.097 6 C -0.171 4.171 7 C 0.111 3.889 8 N -0.832 5.832 9 S 2.797 3.203 10 O -0.973 6.973 11 O -0.988 6.988 12 C -1.147 5.147 13 H 0.123 0.877 14 C -0.085 4.085 15 N -0.472 5.472 16 Si 0.744 3.256 17 H -0.188 1.188 18 H -0.201 1.201 19 H -0.187 1.187 20 C -0.024 4.024 21 C -0.056 4.056 22 N -0.076 5.076 23 H 0.096 0.904 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.148 0.852 27 H 0.147 0.853 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.250 0.750 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.395 11.676 7.307 13.980 hybrid contribution 1.341 1.090 -0.885 1.941 sum -1.054 12.766 6.422 14.329 Atomic orbital electron populations 1.20860 0.90639 1.02919 1.03125 1.19740 0.96050 0.91142 0.97534 1.20838 0.94031 0.96969 1.02700 1.21030 0.93880 0.97292 0.98442 1.20036 0.96826 0.91712 1.01160 1.20770 0.90344 1.02536 1.03418 1.16973 0.88064 0.86191 0.97685 1.53914 1.61578 1.32446 1.35215 1.01231 0.74410 0.72339 0.72279 1.93424 1.36031 1.85583 1.82231 1.93391 1.70702 1.49947 1.84714 1.30383 1.55270 1.16450 1.12613 0.87711 1.24739 0.91164 0.93619 0.98960 1.69894 1.37699 1.12991 1.26648 0.86194 0.80225 0.80032 0.79124 1.18756 1.20095 1.18694 1.16291 0.91009 0.87682 1.07456 1.24913 0.93918 0.92635 0.94135 1.81000 1.09639 1.09078 1.07850 0.90368 0.91500 0.90864 0.85195 0.85272 0.90121 0.91591 0.91141 0.74991 0.89750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.39 9.60 36.01 0.35 -1.04 16 2 C -0.04 -0.58 5.91 -104.23 -0.62 -1.20 16 3 C -0.13 -1.44 9.68 -39.62 -0.38 -1.82 16 4 C -0.09 -1.01 9.68 -39.54 -0.38 -1.39 16 5 C -0.09 -1.35 5.89 -104.46 -0.62 -1.97 16 6 C -0.11 -1.43 9.76 36.00 0.35 -1.08 16 7 C 0.21 3.75 5.93 -83.56 -0.50 3.25 16 8 N -1.08 -21.42 4.37 32.56 0.14 -21.28 16 9 S 2.70 71.38 4.94 -107.50 -0.53 70.85 16 10 O -0.98 -28.46 13.37 -57.17 -0.76 -29.22 16 11 O -1.00 -29.40 18.02 -57.17 -1.03 -30.43 16 12 C -1.01 -27.22 9.70 30.60 0.30 -26.92 16 13 H 0.10 2.52 7.36 -52.48 -0.39 2.13 16 14 C 0.13 3.69 5.46 -17.82 -0.10 3.59 16 15 N -0.84 -24.82 13.19 55.43 0.73 -24.09 16 16 Si 0.92 20.28 29.54 -169.99 -5.02 15.26 16 17 H -0.26 -5.54 7.11 56.52 0.40 -5.13 16 18 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 19 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 20 C -0.02 -0.33 5.58 -106.61 -0.59 -0.92 16 21 C 0.26 5.56 10.31 -22.47 -0.23 5.32 16 22 N -0.40 -9.42 17.63 41.84 0.74 -8.68 16 23 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.07 0.85 7.10 -51.93 -0.37 0.48 16 25 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 26 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 27 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 28 H 0.08 1.08 7.69 -51.93 -0.40 0.69 16 29 H 0.07 0.61 8.08 -51.93 -0.42 0.20 16 30 H 0.07 0.88 7.24 -51.93 -0.38 0.50 16 31 H 0.41 6.83 8.64 -34.47 -0.30 6.54 16 32 H 0.29 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 296.67 15.07 4.47 4.47 Total: -1.00 -36.39 296.67 -6.76 -43.15 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -3.07 Total: 4.16 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: -2.42 Total: -24.18 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: 1.61 Total: -54.06 kcal Atomic # 8 Polarization: -57.86 SS G_CDS: -1.79 Total: -59.65 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 71.38 SS G_CDS: -0.53 Total: 70.85 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -36.39 -6.76 -43.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192985412.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.091 kcal (2) G-P(sol) polarization free energy of solvation -36.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds