Wall clock time and date at job start Tue Mar 31 2020 01:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37836 * 120.04173 * 2 1 4 4 C 1.38526 * 120.34717 * 180.02562 * 3 2 1 5 5 C 1.38063 * 120.41999 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.96280 * 180.02562 * 5 4 3 7 7 C 1.38840 * 120.07030 * 359.97438 * 5 4 3 8 8 N 1.39031 * 120.17102 * 180.02562 * 7 5 4 9 9 S 1.65607 * 120.00360 * 246.99910 * 8 7 5 10 10 O 1.42098 * 106.39918 * 313.02339 * 9 8 7 11 11 O 1.42097 * 106.40432 * 180.10470 * 9 8 7 12 12 C 1.76199 * 107.21928 * 66.56152 * 9 8 7 13 13 H 1.08004 * 119.99830 * 0.02562 * 12 9 8 14 14 C 1.37869 * 120.00006 * 180.02562 * 12 9 8 15 15 N 1.31515 * 120.00065 * 0.02562 * 14 12 9 16 16 Si 1.86805 * 119.99977 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.46980 * 60.00386 * 16 14 12 18 18 H 1.48500 * 109.47011 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47348 * 300.00327 * 16 14 12 20 20 C 1.39694 * 120.04051 * 180.30662 * 2 1 3 21 21 C 1.43205 * 120.20565 * 359.97438 * 20 2 1 22 22 N 3.48656 * 80.50710 * 180.30344 * 2 1 3 23 23 H 1.08992 * 109.47682 * 89.99761 * 1 2 3 24 24 H 1.09004 * 109.46942 * 210.00357 * 1 2 3 25 25 H 1.09003 * 109.46722 * 329.99509 * 1 2 3 26 26 H 1.07999 * 119.82492 * 0.02586 * 3 2 1 27 27 H 1.07998 * 119.78823 * 180.02562 * 4 3 2 28 28 H 1.09001 * 109.47142 * 269.97097 * 6 5 4 29 29 H 1.08997 * 109.47430 * 29.97555 * 6 5 4 30 30 H 1.09006 * 109.46918 * 149.97363 * 6 5 4 31 31 H 0.96999 * 120.00109 * 66.99761 * 8 7 5 32 32 H 0.97005 * 119.99986 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1932 0.0000 4 6 3.5823 1.2006 -0.0005 5 6 4.2877 0.0138 -0.0016 6 6 5.7945 0.0338 -0.0016 7 6 3.6103 -1.1982 -0.0016 8 7 4.3185 -2.3946 -0.0022 9 16 4.2576 -3.3923 -1.3225 10 8 2.8868 -3.5008 -1.6805 11 8 5.0717 -4.5156 -1.0145 12 6 5.0533 -2.5501 -2.6499 13 1 5.4645 -1.5636 -2.4943 14 6 5.1511 -3.1504 -3.8872 15 7 4.6500 -4.3514 -4.0768 16 14 5.9941 -2.2571 -5.2947 17 1 7.4027 -1.9675 -4.9242 18 1 5.9679 -3.1111 -6.5093 19 1 5.2826 -0.9830 -5.5693 20 6 2.2063 -1.2093 -0.0065 21 6 1.4956 -2.4525 -0.0126 22 7 0.9320 -3.4388 -0.0182 23 1 -0.3634 0.0000 -1.0275 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6549 2.1272 0.0004 27 1 4.1138 2.1407 -0.0001 28 1 6.1578 0.0390 -1.0293 29 1 6.1460 0.9283 0.5126 30 1 6.1697 -0.8515 0.5119 31 1 4.8483 -2.6449 0.7708 32 1 4.7185 -4.7736 -4.9475 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192985412.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:45 Heat of formation + Delta-G solvation = -67.931477 kcal Electronic energy + Delta-G solvation = -20054.205535 eV Core-core repulsion = 16911.990756 eV Total energy + Delta-G solvation = -3142.214779 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.97442 -37.67143 -37.17726 -36.41693 -36.19092 -35.20939 -34.11135 -30.58023 -30.12852 -28.29318 -25.88514 -24.55029 -22.17686 -21.15552 -19.66362 -18.91158 -18.49973 -18.11313 -17.02949 -16.99191 -15.92554 -15.77123 -15.41641 -15.11888 -14.57569 -14.19833 -14.06356 -13.97066 -13.82118 -13.70723 -13.41746 -13.34263 -13.02645 -12.98661 -12.74864 -12.58427 -12.47040 -12.38932 -12.30205 -12.14552 -12.03658 -11.24836 -11.19109 -10.80279 -9.63573 -9.28681 -8.77405 -7.51961 -0.20723 0.12360 0.50071 1.33317 1.36480 1.49147 1.87791 2.17721 2.18708 2.56552 2.77873 2.87980 3.20090 3.62434 3.78886 4.02933 4.17251 4.32488 4.38151 4.53982 4.68102 4.74277 4.80793 4.92178 4.97000 5.09055 5.20411 5.27563 5.34958 5.44551 5.53692 5.62945 5.88577 5.96159 6.25925 6.74604 6.77109 8.18341 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.017575 B = 0.008148 C = 0.007105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.773571 B = 3435.666349 C = 3940.011987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.042 4.042 3 C -0.107 4.107 4 C -0.068 4.068 5 C -0.097 4.097 6 C -0.119 4.119 7 C 0.173 3.827 8 N -1.069 6.069 9 S 2.696 3.304 10 O -1.019 7.019 11 O -1.044 7.044 12 C -1.023 5.023 13 H 0.130 0.870 14 C 0.069 3.931 15 N -0.898 5.898 16 Si 0.991 3.009 17 H -0.244 1.244 18 H -0.270 1.270 19 H -0.244 1.244 20 C -0.062 4.062 21 C 0.274 3.726 22 N -0.464 5.464 23 H 0.077 0.923 24 H 0.045 0.955 25 H 0.116 0.884 26 H 0.180 0.820 27 H 0.178 0.822 28 H 0.071 0.929 29 H 0.106 0.894 30 H 0.061 0.939 31 H 0.425 0.575 32 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.049 19.490 7.342 20.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.045 4.045 3 C -0.125 4.125 4 C -0.087 4.087 5 C -0.100 4.100 6 C -0.175 4.175 7 C 0.075 3.925 8 N -0.822 5.822 9 S 2.800 3.200 10 O -1.008 7.008 11 O -1.034 7.034 12 C -1.158 5.158 13 H 0.148 0.852 14 C -0.144 4.144 15 N -0.529 5.529 16 Si 0.809 3.191 17 H -0.167 1.167 18 H -0.194 1.194 19 H -0.168 1.168 20 C -0.068 4.068 21 C -0.039 4.039 22 N -0.142 5.142 23 H 0.096 0.904 24 H 0.064 0.936 25 H 0.134 0.866 26 H 0.197 0.803 27 H 0.196 0.804 28 H 0.090 0.910 29 H 0.125 0.875 30 H 0.080 0.920 31 H 0.263 0.737 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.346 16.878 7.124 18.369 hybrid contribution 0.974 -0.362 -0.692 1.249 sum -0.371 16.515 6.432 17.728 Atomic orbital electron populations 1.20954 0.89317 1.04016 1.03385 1.20129 0.97207 0.90652 0.96531 1.21423 0.94269 0.97448 0.99339 1.21625 0.94152 0.97865 0.95014 1.20334 0.97903 0.91194 1.00564 1.20883 0.89116 1.04246 1.03292 1.17345 0.88013 0.86287 1.00876 1.53072 1.62187 1.33098 1.33880 1.00821 0.73501 0.72489 0.73214 1.93379 1.37626 1.86416 1.83388 1.93316 1.71411 1.52965 1.85713 1.30699 1.54923 1.17417 1.12758 0.85225 1.26094 0.91568 0.94274 1.02460 1.70024 1.39825 1.15241 1.27822 0.85149 0.79831 0.79107 0.75059 1.16707 1.19395 1.16775 1.16716 0.91480 0.87624 1.11017 1.25732 0.92853 0.93017 0.92333 1.80962 1.11739 1.10864 1.10633 0.90447 0.93603 0.86596 0.80256 0.80443 0.90998 0.87543 0.92024 0.73659 0.89254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.55 9.60 71.24 0.68 -1.87 16 2 C -0.04 -1.08 5.91 -19.61 -0.12 -1.19 16 3 C -0.11 -1.81 9.68 22.24 0.22 -1.59 16 4 C -0.07 -1.16 9.68 22.30 0.22 -0.95 16 5 C -0.10 -2.46 5.89 -19.76 -0.12 -2.58 16 6 C -0.12 -2.57 9.76 71.24 0.70 -1.88 16 7 C 0.17 6.08 5.93 38.67 0.23 6.31 16 8 N -1.07 -43.56 4.37 -50.89 -0.22 -43.78 16 9 S 2.70 149.08 4.94 -56.49 -0.28 148.80 16 10 O -1.02 -62.35 13.37 -128.00 -1.71 -64.06 16 11 O -1.04 -65.03 18.02 -128.00 -2.31 -67.33 16 12 C -1.02 -55.43 9.70 67.73 0.66 -54.77 16 13 H 0.13 6.09 7.36 -2.91 -0.02 6.07 16 14 C 0.07 3.81 5.46 84.65 0.46 4.27 16 15 N -0.90 -54.65 13.19 21.44 0.28 -54.36 16 16 Si 0.99 40.48 29.54 68.60 2.03 42.51 16 17 H -0.24 -9.13 7.11 99.48 0.71 -8.42 16 18 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 19 H -0.24 -9.19 7.11 99.48 0.71 -8.49 16 20 C -0.06 -2.24 5.58 -21.15 -0.12 -2.36 16 21 C 0.27 12.41 10.31 88.33 0.91 13.32 16 22 N -0.46 -23.55 17.63 19.00 0.34 -23.21 16 23 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.04 1.16 7.10 -2.38 -0.02 1.15 16 25 H 0.12 1.43 8.09 -2.39 -0.02 1.41 16 26 H 0.18 1.38 8.06 -2.91 -0.02 1.36 16 27 H 0.18 1.45 8.06 -2.91 -0.02 1.43 16 28 H 0.07 1.70 7.69 -2.39 -0.02 1.69 16 29 H 0.11 1.41 8.08 -2.39 -0.02 1.39 16 30 H 0.06 1.43 7.24 -2.38 -0.02 1.41 16 31 H 0.42 14.69 8.64 -96.75 -0.84 13.85 16 32 H 0.30 16.40 8.31 -92.70 -0.77 15.63 16 Total: -1.00 -86.66 296.67 2.18 -84.48 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.34 Total: 20.25 kcal Atomic # 6 Polarization: -47.01 SS G_CDS: 3.72 Total: -43.29 kcal Atomic # 7 Polarization: -121.75 SS G_CDS: 0.40 Total: -121.36 kcal Atomic # 8 Polarization: -127.38 SS G_CDS: -4.02 Total: -131.39 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.51 kcal Atomic # 16 Polarization: 149.08 SS G_CDS: -0.28 Total: 148.80 kcal Total: -86.66 2.18 -84.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192985412.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.546 kcal (2) G-P(sol) polarization free energy of solvation -86.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds