Wall clock time and date at job start Tue Mar 31 2020 01:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 N 1.46492 * 109.47363 * 120.00126 * 2 1 3 5 5 S 1.65601 * 120.00062 * 265.00183 * 4 2 1 6 6 O 1.42100 * 106.40239 * 178.53710 * 5 4 2 7 7 O 1.42090 * 106.40352 * 311.45966 * 5 4 2 8 8 C 1.76203 * 107.21941 * 65.00005 * 5 4 2 9 9 H 1.08004 * 119.99622 * 0.02562 * 8 5 4 10 10 C 1.37867 * 120.00204 * 179.97438 * 8 5 4 11 11 N 1.31517 * 120.00162 * 359.97438 * 10 8 5 12 12 Si 1.86800 * 120.00128 * 180.02562 * 10 8 5 13 13 H 1.48502 * 109.47093 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47546 * 119.99986 * 12 10 8 15 15 H 1.48502 * 109.47236 * 239.99957 * 12 10 8 16 16 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 17 17 C 1.38369 * 119.84558 * 279.72377 * 16 2 1 18 18 C 1.37944 * 120.15066 * 179.76696 * 17 16 2 19 19 C 1.39630 * 119.84678 * 0.50274 * 18 17 16 20 20 C 1.43206 * 120.15036 * 179.76569 * 19 18 17 21 21 N 6.84440 * 109.47886 * 240.00186 * 2 1 3 22 22 C 1.39627 * 119.69845 * 359.75133 * 19 18 17 23 23 C 1.37940 * 119.84834 * 359.97438 * 22 19 18 24 24 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 27 27 H 0.97003 * 120.00229 * 85.00132 * 4 2 1 28 28 H 0.97006 * 120.00368 * 179.97438 * 11 10 8 29 29 H 1.07999 * 119.92245 * 0.02562 * 17 16 2 30 30 H 1.07997 * 120.07321 * 180.27720 * 18 17 16 31 31 H 1.08002 * 120.07594 * 179.97438 * 22 19 18 32 32 H 1.08009 * 119.92807 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 16 2.4123 0.1772 2.5504 6 8 2.8125 -0.7698 3.5314 7 8 3.2436 1.2443 2.1156 8 6 0.9275 0.9147 3.1475 9 1 -0.0047 0.7485 2.6280 10 6 0.9556 1.7029 4.2782 11 7 2.0905 1.9039 4.9117 12 14 -0.6185 2.4841 4.9116 13 1 -1.7497 2.1054 4.0271 14 1 -0.8876 2.0069 6.2918 15 1 -0.4697 3.9616 4.9189 16 6 2.0324 -0.7103 -1.2305 17 6 2.0708 -2.0931 -1.2600 18 6 2.5250 -2.7498 -2.3848 19 6 2.9563 -2.0157 -3.4915 20 6 3.4338 -2.6907 -4.6607 21 7 3.8124 -3.2261 -5.5883 22 6 2.9198 -0.6204 -3.4529 23 6 2.4580 0.0233 -2.3237 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 2.1111 -1.6562 1.1948 28 1 2.1104 2.4588 5.7071 29 1 1.7406 -2.6596 -0.4018 30 1 2.5502 -3.8293 -2.4081 31 1 3.2524 -0.0465 -4.3053 32 1 2.4287 1.1026 -2.2927 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192987867.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:24:41 Heat of formation + Delta-G solvation = -69.076930 kcal Electronic energy + Delta-G solvation = -18992.429377 eV Core-core repulsion = 15850.164927 eV Total energy + Delta-G solvation = -3142.264450 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.67966 -37.99260 -37.33136 -36.57183 -36.07150 -35.12219 -32.28266 -31.84540 -30.03998 -28.16028 -25.45117 -23.76884 -22.25582 -20.95032 -19.88376 -19.30272 -18.39453 -17.53063 -16.86624 -16.26638 -15.96106 -15.73784 -15.53050 -15.13088 -15.04982 -14.54611 -14.35269 -14.16445 -13.94802 -13.80555 -13.70272 -13.15822 -12.98948 -12.92684 -12.64571 -12.45321 -12.43030 -12.26910 -12.21911 -11.93843 -11.66027 -11.21102 -10.90750 -10.25817 -9.91922 -9.70691 -8.69252 -7.40330 -0.22885 0.41394 0.47176 1.38375 1.40566 1.56849 1.61053 1.92956 2.25975 2.65126 2.86124 2.89436 3.08986 3.66783 3.77810 3.94995 4.02004 4.33822 4.41252 4.48988 4.53411 4.61401 4.75755 4.85686 4.99989 5.08901 5.24155 5.29026 5.35268 5.36084 5.53027 5.70260 5.88173 6.04641 6.43801 6.44929 6.86960 8.27219 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.037221 B = 0.004238 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.090319 B = 6605.663518 C = 6866.533945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.181 3.819 3 H 0.089 0.911 4 N -1.115 6.115 5 S 2.718 3.282 6 O -1.048 7.048 7 O -1.043 7.043 8 C -1.033 5.033 9 H 0.132 0.868 10 C 0.070 3.930 11 N -0.897 5.897 12 Si 0.987 3.013 13 H -0.242 1.242 14 H -0.266 1.266 15 H -0.263 1.263 16 C -0.055 4.055 17 C -0.119 4.119 18 C -0.059 4.059 19 C -0.047 4.047 20 C 0.284 3.716 21 N -0.468 5.468 22 C -0.058 4.058 23 C -0.117 4.117 24 H 0.089 0.911 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.415 0.585 28 H 0.297 0.703 29 H 0.145 0.855 30 H 0.152 0.848 31 H 0.154 0.846 32 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.880 -3.821 -12.944 14.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.074 3.926 3 H 0.107 0.893 4 N -0.874 5.874 5 S 2.819 3.181 6 O -1.038 7.038 7 O -1.033 7.033 8 C -1.167 5.167 9 H 0.149 0.851 10 C -0.142 4.142 11 N -0.529 5.529 12 Si 0.806 3.194 13 H -0.164 1.164 14 H -0.191 1.191 15 H -0.187 1.187 16 C -0.057 4.057 17 C -0.137 4.137 18 C -0.080 4.080 19 C -0.051 4.051 20 C -0.031 4.031 21 N -0.144 5.144 22 C -0.078 4.078 23 C -0.135 4.135 24 H 0.107 0.893 25 H 0.094 0.906 26 H 0.080 0.920 27 H 0.250 0.750 28 H 0.107 0.893 29 H 0.163 0.837 30 H 0.170 0.830 31 H 0.172 0.828 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.288 -4.329 -13.898 15.176 hybrid contribution -0.908 0.279 1.021 1.394 sum -5.196 -4.051 -12.877 14.465 Atomic orbital electron populations 1.22425 0.92885 1.03928 1.03632 1.19806 0.95418 0.95767 0.81628 0.89273 1.55532 1.84706 1.19278 1.27897 0.99929 0.75563 0.71921 0.70666 1.93314 1.85054 1.65092 1.60331 1.93306 1.70139 1.57363 1.82470 1.31052 1.17537 1.45438 1.22661 0.85056 1.25981 1.01669 0.92698 0.93891 1.70012 1.29023 1.34936 1.18913 0.85134 0.77172 0.78237 0.78840 1.16423 1.19053 1.18747 1.20326 0.96062 0.94677 0.94654 1.21072 1.00261 0.93590 0.98808 1.21311 0.94909 1.01056 0.90708 1.16082 1.06468 0.93112 0.89423 1.25870 0.92223 0.92424 0.92542 1.81270 1.11112 1.09818 1.12200 1.21332 0.95926 0.91852 0.98739 1.21214 0.98587 1.01590 0.92119 0.89257 0.90613 0.92036 0.74995 0.89337 0.83722 0.82985 0.82794 0.83123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.01 9.50 71.98 0.68 -3.33 16 2 C 0.18 5.05 3.11 44.25 0.14 5.19 16 3 H 0.09 2.77 7.35 -2.39 -0.02 2.75 16 4 N -1.11 -38.53 5.42 -172.53 -0.94 -39.46 16 5 S 2.72 136.66 5.00 -56.49 -0.28 136.38 16 6 O -1.05 -60.15 18.02 -128.00 -2.31 -62.46 16 7 O -1.04 -58.97 17.36 -128.00 -2.22 -61.19 16 8 C -1.03 -52.55 9.57 67.73 0.65 -51.90 16 9 H 0.13 5.80 5.62 -2.91 -0.02 5.78 16 10 C 0.07 3.71 5.46 84.65 0.46 4.17 16 11 N -0.90 -51.91 13.19 21.44 0.28 -51.63 16 12 Si 0.99 39.12 29.54 68.60 2.03 41.15 16 13 H -0.24 -8.67 7.11 99.48 0.71 -7.97 16 14 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 15 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 16 C -0.05 -1.18 4.96 -19.80 -0.10 -1.28 16 17 C -0.12 -2.19 9.14 22.23 0.20 -1.99 16 18 C -0.06 -0.94 9.76 22.54 0.22 -0.72 16 19 C -0.05 -0.81 5.73 -21.36 -0.12 -0.93 16 20 C 0.28 5.78 15.33 88.33 1.35 7.13 16 21 N -0.47 -11.82 18.54 19.00 0.35 -11.47 16 22 C -0.06 -0.90 9.76 22.53 0.22 -0.68 16 23 C -0.12 -2.11 9.65 22.23 0.21 -1.89 16 24 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.06 1.72 5.74 -2.39 -0.01 1.71 16 27 H 0.41 11.98 7.05 -96.74 -0.68 11.30 16 28 H 0.30 15.46 8.31 -92.70 -0.77 14.69 16 29 H 0.15 2.32 6.79 -2.91 -0.02 2.30 16 30 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 31 H 0.15 1.70 8.06 -2.91 -0.02 1.67 16 32 H 0.15 2.30 8.03 -2.91 -0.02 2.27 16 Total: -1.00 -75.63 301.64 1.33 -74.30 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: 0.49 Total: 20.62 kcal Atomic # 6 Polarization: -50.16 SS G_CDS: 3.92 Total: -46.23 kcal Atomic # 7 Polarization: -102.26 SS G_CDS: -0.30 Total: -102.56 kcal Atomic # 8 Polarization: -119.13 SS G_CDS: -4.53 Total: -123.65 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Atomic # 16 Polarization: 136.66 SS G_CDS: -0.28 Total: 136.38 kcal Total: -75.63 1.33 -74.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192987867.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.225 kcal (2) G-P(sol) polarization free energy of solvation -75.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds