Wall clock time and date at job start Tue Mar 31 2020 01:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47073 * 2 1 4 4 N 1.46503 * 109.47208 * 239.99390 * 2 1 3 5 5 S 1.65591 * 119.99681 * 95.00016 * 4 2 1 6 6 O 1.42096 * 106.40484 * 178.54014 * 5 4 2 7 7 O 1.42104 * 106.40528 * 311.46133 * 5 4 2 8 8 C 1.76208 * 107.22006 * 65.00044 * 5 4 2 9 9 H 1.07994 * 119.99411 * 359.97438 * 8 5 4 10 10 C 1.37879 * 119.99957 * 179.97438 * 8 5 4 11 11 N 1.31510 * 120.00044 * 0.02562 * 10 8 5 12 12 Si 1.86803 * 119.99680 * 179.97438 * 10 8 5 13 13 H 1.48503 * 109.47252 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46944 * 120.00233 * 12 10 8 15 15 H 1.48495 * 109.47033 * 240.00096 * 12 10 8 16 16 C 1.50706 * 109.47066 * 119.99734 * 2 1 3 17 17 C 1.38385 * 119.92654 * 79.99976 * 16 2 1 18 18 C 1.38333 * 120.30642 * 179.72580 * 17 16 2 19 19 C 1.37970 * 120.15027 * 359.97438 * 18 17 16 20 20 C 1.39607 * 119.84974 * 0.02562 * 19 18 17 21 21 C 1.43197 * 120.15189 * 179.97438 * 20 19 18 22 22 N 5.95833 * 111.74894 * 82.65904 * 2 1 3 23 23 C 1.37930 * 119.92114 * 259.72362 * 16 2 1 24 24 H 1.08992 * 109.47221 * 60.00446 * 1 2 3 25 25 H 1.09004 * 109.47171 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46980 * 300.00247 * 1 2 3 27 27 H 0.96998 * 120.00000 * 274.99865 * 4 2 1 28 28 H 0.96996 * 119.99696 * 180.02562 * 11 10 8 29 29 H 1.08006 * 119.84408 * 359.74328 * 17 16 2 30 30 H 1.08004 * 119.92590 * 180.02562 * 18 17 16 31 31 H 1.08005 * 120.07341 * 180.02562 * 19 18 17 32 32 H 1.07994 * 120.07609 * 0.25565 * 23 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 16 2.4122 0.1769 -2.5504 6 8 2.8777 -0.7637 -3.5084 7 8 1.3247 1.0591 -2.7922 8 6 3.7928 1.1909 -2.1371 9 1 4.2098 1.1555 -1.1416 10 6 4.3406 2.0292 -3.0848 11 7 3.8324 2.0725 -4.2970 12 14 5.8038 3.1046 -2.6464 13 1 6.1827 2.8714 -1.2296 14 1 6.9499 2.7642 -3.5273 15 1 5.4424 4.5326 -2.8341 16 6 2.0324 -0.7104 1.2305 17 6 2.0661 -2.0934 1.2639 18 6 2.5310 -2.7535 2.3872 19 6 2.9650 -2.0358 3.4827 20 6 2.9337 -0.6403 3.4560 21 6 3.3821 0.1110 4.5896 22 7 3.7378 0.7071 5.4888 23 6 2.4627 0.0196 2.3188 24 1 -0.3633 0.5137 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 2.1110 -1.6563 -1.1947 28 1 4.2181 2.6621 -4.9637 29 1 1.7282 -2.6601 0.4088 30 1 2.5551 -3.8331 2.4064 31 1 3.3281 -2.5524 4.3589 32 1 2.4362 1.0988 2.2914 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192993789.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:24:44 Heat of formation + Delta-G solvation = -44.455647 kcal Electronic energy + Delta-G solvation = -19150.535943 eV Core-core repulsion = 16009.339153 eV Total energy + Delta-G solvation = -3141.196791 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.82201 -36.85089 -35.66207 -35.10996 -33.97999 -33.11349 -31.45200 -30.85599 -28.73403 -26.16610 -24.26341 -23.37632 -21.38055 -19.11029 -18.43399 -17.54665 -16.47231 -16.25611 -15.70352 -15.29626 -14.70423 -14.32860 -14.21051 -14.03302 -13.47022 -13.39076 -13.26051 -13.14695 -12.83594 -12.32075 -12.04721 -12.00746 -11.60181 -11.50488 -11.25556 -11.21424 -10.89927 -10.60470 -10.36089 -10.28092 -10.19400 -9.28184 -9.19196 -9.07095 -8.89069 -8.59175 -6.73005 -5.34811 0.66378 1.17762 2.29077 2.54907 2.84601 3.04044 3.13189 3.19983 3.72586 3.76789 4.04541 4.57070 4.61375 4.67868 4.74375 4.92134 5.12844 5.26452 5.37781 5.54057 5.67101 5.73817 5.78656 5.93577 6.09395 6.12836 6.17310 6.30052 6.48824 6.57106 6.69221 6.82853 7.29863 7.35861 7.80940 7.95077 8.87101 10.21192 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.017129 B = 0.005942 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.304037 B = 4710.754182 C = 5704.092052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.195 3.805 3 H 0.101 0.899 4 N -1.130 6.130 5 S 2.713 3.287 6 O -1.006 7.006 7 O -1.003 7.003 8 C -1.021 5.021 9 H 0.103 0.897 10 C 0.134 3.866 11 N -0.844 5.844 12 Si 0.917 3.083 13 H -0.262 1.262 14 H -0.271 1.271 15 H -0.271 1.271 16 C -0.076 4.076 17 C -0.078 4.078 18 C -0.119 4.119 19 C -0.077 4.077 20 C -0.032 4.032 21 C 0.260 3.740 22 N -0.425 5.425 23 C -0.062 4.062 24 H 0.080 0.920 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.401 0.599 28 H 0.290 0.710 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.130 0.870 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.681 -7.650 11.923 14.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.087 3.913 3 H 0.119 0.881 4 N -0.884 5.884 5 S 2.813 3.187 6 O -0.996 6.996 7 O -0.993 6.993 8 C -1.154 5.154 9 H 0.121 0.879 10 C -0.084 4.084 11 N -0.474 5.474 12 Si 0.741 3.259 13 H -0.186 1.186 14 H -0.196 1.196 15 H -0.196 1.196 16 C -0.078 4.078 17 C -0.097 4.097 18 C -0.137 4.137 19 C -0.097 4.097 20 C -0.035 4.035 21 C -0.055 4.055 22 N -0.100 5.100 23 C -0.083 4.083 24 H 0.099 0.901 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.232 0.768 28 H 0.101 0.899 29 H 0.150 0.850 30 H 0.151 0.849 31 H 0.147 0.853 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.636 -6.512 12.288 14.374 hybrid contribution 1.240 0.126 0.253 1.272 sum -2.396 -6.387 12.541 14.276 Atomic orbital electron populations 1.22338 0.94484 1.02401 1.03285 1.19510 0.94086 0.96047 0.81700 0.88087 1.56229 1.83648 1.18573 1.29951 1.00500 0.75036 0.72975 0.70187 1.93378 1.82951 1.64832 1.58477 1.93366 1.56665 1.65882 1.83380 1.30576 1.36839 1.40689 1.07282 0.87889 1.24722 0.96539 0.94101 0.93041 1.69897 1.39160 1.34945 1.03402 0.86178 0.80526 0.79424 0.79752 1.18581 1.19616 1.19601 1.20134 0.98124 0.94064 0.95451 1.21255 0.96525 0.93962 0.97986 1.21056 0.99393 1.00298 0.92913 1.21119 0.97984 0.91643 0.98997 1.15943 1.05452 0.92122 0.90032 1.25744 0.93417 0.93365 0.92989 1.81241 1.09331 1.08512 1.10940 1.21112 0.95524 1.00618 0.91031 0.90138 0.92440 0.91985 0.76759 0.89928 0.85048 0.84911 0.85255 0.84530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 9.49 37.16 0.35 -1.85 16 2 C 0.19 2.90 2.97 -69.08 -0.21 2.70 16 3 H 0.10 1.60 7.70 -51.93 -0.40 1.20 16 4 N -1.13 -19.92 5.43 -5.88 -0.03 -19.96 16 5 S 2.71 67.38 4.93 -107.50 -0.53 66.85 16 6 O -1.01 -28.20 18.02 -57.17 -1.03 -29.23 16 7 O -1.00 -27.34 17.28 -57.17 -0.99 -28.32 16 8 C -1.02 -26.75 9.58 30.60 0.29 -26.46 16 9 H 0.10 2.47 7.81 -52.49 -0.41 2.06 16 10 C 0.13 3.63 5.46 -17.82 -0.10 3.53 16 11 N -0.84 -24.21 13.19 55.43 0.73 -23.48 16 12 Si 0.92 20.17 29.54 -169.99 -5.02 15.15 16 13 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 14 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 15 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 16 C -0.08 -0.92 4.95 -104.68 -0.52 -1.44 16 17 C -0.08 -0.80 9.15 -39.49 -0.36 -1.16 16 18 C -0.12 -0.99 10.03 -39.64 -0.40 -1.39 16 19 C -0.08 -0.67 9.76 -39.17 -0.38 -1.06 16 20 C -0.03 -0.34 5.73 -106.93 -0.61 -0.95 16 21 C 0.26 3.17 15.33 -22.47 -0.34 2.83 16 22 N -0.43 -6.08 18.54 41.84 0.78 -5.30 16 23 C -0.06 -0.70 9.37 -39.17 -0.37 -1.07 16 24 H 0.08 1.26 7.64 -51.93 -0.40 0.87 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.40 5.94 7.08 -34.46 -0.24 5.70 16 28 H 0.29 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.13 1.17 6.81 -52.48 -0.36 0.82 16 30 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 31 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 32 H 0.14 1.43 8.03 -52.49 -0.42 1.01 16 LS Contribution 305.85 15.07 4.61 4.61 Total: -1.00 -34.67 305.85 -7.18 -41.85 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -3.06 Total: 4.14 kcal Atomic # 6 Polarization: -23.68 SS G_CDS: -2.64 Total: -26.32 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 1.47 Total: -48.74 kcal Atomic # 8 Polarization: -55.54 SS G_CDS: -2.02 Total: -57.55 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: 67.38 SS G_CDS: -0.53 Total: 66.85 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.67 -7.18 -41.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192993789.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.605 kcal (2) G-P(sol) polarization free energy of solvation -34.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds