Wall clock time and date at job start Tue Mar 31 2020 01:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47073 * 2 1 4 4 N 1.46503 * 109.47208 * 239.99390 * 2 1 3 5 5 S 1.65591 * 119.99681 * 95.00016 * 4 2 1 6 6 O 1.42096 * 106.40484 * 178.54014 * 5 4 2 7 7 O 1.42104 * 106.40528 * 311.46133 * 5 4 2 8 8 C 1.76208 * 107.22006 * 65.00044 * 5 4 2 9 9 H 1.07994 * 119.99411 * 359.97438 * 8 5 4 10 10 C 1.37879 * 119.99957 * 179.97438 * 8 5 4 11 11 N 1.31510 * 120.00044 * 0.02562 * 10 8 5 12 12 Si 1.86803 * 119.99680 * 179.97438 * 10 8 5 13 13 H 1.48503 * 109.47252 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46944 * 120.00233 * 12 10 8 15 15 H 1.48495 * 109.47033 * 240.00096 * 12 10 8 16 16 C 1.50706 * 109.47066 * 119.99734 * 2 1 3 17 17 C 1.38385 * 119.92654 * 79.99976 * 16 2 1 18 18 C 1.38333 * 120.30642 * 179.72580 * 17 16 2 19 19 C 1.37970 * 120.15027 * 359.97438 * 18 17 16 20 20 C 1.39607 * 119.84974 * 0.02562 * 19 18 17 21 21 C 1.43197 * 120.15189 * 179.97438 * 20 19 18 22 22 N 5.95833 * 111.74894 * 82.65904 * 2 1 3 23 23 C 1.37930 * 119.92114 * 259.72362 * 16 2 1 24 24 H 1.08992 * 109.47221 * 60.00446 * 1 2 3 25 25 H 1.09004 * 109.47171 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46980 * 300.00247 * 1 2 3 27 27 H 0.96998 * 120.00000 * 274.99865 * 4 2 1 28 28 H 0.96996 * 119.99696 * 180.02562 * 11 10 8 29 29 H 1.08006 * 119.84408 * 359.74328 * 17 16 2 30 30 H 1.08004 * 119.92590 * 180.02562 * 18 17 16 31 31 H 1.08005 * 120.07341 * 180.02562 * 19 18 17 32 32 H 1.07994 * 120.07609 * 0.25565 * 23 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 16 2.4122 0.1769 -2.5504 6 8 2.8777 -0.7637 -3.5084 7 8 1.3247 1.0591 -2.7922 8 6 3.7928 1.1909 -2.1371 9 1 4.2098 1.1555 -1.1416 10 6 4.3406 2.0292 -3.0848 11 7 3.8324 2.0725 -4.2970 12 14 5.8038 3.1046 -2.6464 13 1 6.1827 2.8714 -1.2296 14 1 6.9499 2.7642 -3.5273 15 1 5.4424 4.5326 -2.8341 16 6 2.0324 -0.7104 1.2305 17 6 2.0661 -2.0934 1.2639 18 6 2.5310 -2.7535 2.3872 19 6 2.9650 -2.0358 3.4827 20 6 2.9337 -0.6403 3.4560 21 6 3.3821 0.1110 4.5896 22 7 3.7378 0.7071 5.4888 23 6 2.4627 0.0196 2.3188 24 1 -0.3633 0.5137 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 2.1110 -1.6563 -1.1947 28 1 4.2181 2.6621 -4.9637 29 1 1.7282 -2.6601 0.4088 30 1 2.5551 -3.8331 2.4064 31 1 3.3281 -2.5524 4.3589 32 1 2.4362 1.0988 2.2914 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192993789.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:24:44 Heat of formation + Delta-G solvation = -69.979360 kcal Electronic energy + Delta-G solvation = -19151.642735 eV Core-core repulsion = 16009.339153 eV Total energy + Delta-G solvation = -3142.303582 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.68134 -37.92762 -37.34045 -36.61881 -36.06700 -35.14439 -32.26377 -31.94560 -29.84323 -28.22381 -25.13463 -24.32993 -22.35159 -21.01171 -19.44753 -19.30425 -18.22702 -17.29081 -16.95841 -16.78901 -16.10551 -15.87613 -15.43247 -15.13055 -15.09508 -14.45228 -14.33135 -14.11667 -13.95825 -13.81544 -13.45048 -13.25865 -13.02893 -12.93688 -12.54025 -12.48646 -12.41036 -12.35119 -12.28822 -12.16633 -11.63597 -11.24749 -10.96828 -10.28248 -9.86982 -9.71938 -8.73252 -7.44046 -0.15382 0.29919 0.51177 1.32890 1.35479 1.51277 1.60185 1.95461 2.21607 2.60557 2.83499 2.91437 3.08939 3.61848 3.81432 3.96502 4.17502 4.29027 4.30900 4.40458 4.56833 4.60307 4.75996 4.85141 4.99417 5.05991 5.20452 5.31885 5.35130 5.42157 5.47764 5.67139 5.91553 5.94558 6.43251 6.45301 6.82658 8.23101 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.017129 B = 0.005942 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.304037 B = 4710.754182 C = 5704.092052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.188 3.812 3 H 0.084 0.916 4 N -1.113 6.113 5 S 2.723 3.277 6 O -1.045 7.045 7 O -1.037 7.037 8 C -1.038 5.038 9 H 0.119 0.881 10 C 0.073 3.927 11 N -0.893 5.893 12 Si 0.982 3.018 13 H -0.249 1.249 14 H -0.261 1.261 15 H -0.261 1.261 16 C -0.091 4.091 17 C -0.080 4.080 18 C -0.108 4.108 19 C -0.063 4.063 20 C -0.041 4.041 21 C 0.281 3.719 22 N -0.468 5.468 23 C -0.068 4.068 24 H 0.049 0.951 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.416 0.584 28 H 0.298 0.702 29 H 0.144 0.856 30 H 0.168 0.832 31 H 0.156 0.844 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.965 -8.957 13.925 16.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.081 3.919 3 H 0.102 0.898 4 N -0.872 5.872 5 S 2.823 3.177 6 O -1.036 7.036 7 O -1.026 7.026 8 C -1.171 5.171 9 H 0.137 0.863 10 C -0.140 4.140 11 N -0.524 5.524 12 Si 0.801 3.199 13 H -0.172 1.172 14 H -0.186 1.186 15 H -0.185 1.185 16 C -0.092 4.092 17 C -0.099 4.099 18 C -0.126 4.126 19 C -0.083 4.083 20 C -0.045 4.045 21 C -0.033 4.033 22 N -0.144 5.144 23 C -0.089 4.089 24 H 0.068 0.932 25 H 0.096 0.904 26 H 0.105 0.895 27 H 0.251 0.749 28 H 0.108 0.892 29 H 0.161 0.839 30 H 0.185 0.815 31 H 0.174 0.826 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.933 -7.837 14.293 16.562 hybrid contribution 0.946 0.427 -0.306 1.082 sum -1.988 -7.410 13.987 15.953 Atomic orbital electron populations 1.22311 0.93337 1.03685 1.02961 1.19670 0.95119 0.95445 0.81705 0.89758 1.55540 1.83351 1.19050 1.29283 0.99835 0.74420 0.72540 0.70896 1.93314 1.83468 1.65592 1.61197 1.93319 1.57518 1.67167 1.84630 1.30963 1.37269 1.40834 1.08056 0.86252 1.25897 0.99682 0.95592 0.92799 1.69985 1.41195 1.36445 1.04807 0.85212 0.76755 0.77726 0.80217 1.17173 1.18577 1.18501 1.19813 1.00218 0.94890 0.94307 1.21499 0.96080 0.93158 0.99190 1.21402 0.97665 1.01935 0.91600 1.21478 0.96192 0.90704 0.99955 1.15975 1.06363 0.92943 0.89216 1.25933 0.92276 0.92499 0.92590 1.81262 1.11019 1.09697 1.12386 1.21112 0.95693 1.00834 0.91259 0.93197 0.90377 0.89525 0.74898 0.89225 0.83879 0.81476 0.82633 0.84593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.22 9.49 71.98 0.68 -3.54 16 2 C 0.19 5.47 2.97 44.25 0.13 5.60 16 3 H 0.08 2.71 7.70 -2.39 -0.02 2.69 16 4 N -1.11 -38.81 5.43 -172.51 -0.94 -39.75 16 5 S 2.72 138.00 4.93 -56.49 -0.28 137.72 16 6 O -1.05 -59.99 18.02 -128.00 -2.31 -62.30 16 7 O -1.04 -58.41 17.28 -128.00 -2.21 -60.63 16 8 C -1.04 -54.76 9.58 67.73 0.65 -54.11 16 9 H 0.12 5.66 7.81 -2.91 -0.02 5.64 16 10 C 0.07 3.99 5.46 84.66 0.46 4.45 16 11 N -0.89 -52.26 13.19 21.45 0.28 -51.98 16 12 Si 0.98 40.75 29.54 68.60 2.03 42.77 16 13 H -0.25 -9.66 7.11 99.48 0.71 -8.96 16 14 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 15 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 16 C -0.09 -2.01 4.95 -19.90 -0.10 -2.11 16 17 C -0.08 -1.37 9.15 22.33 0.20 -1.17 16 18 C -0.11 -1.33 10.03 22.23 0.22 -1.10 16 19 C -0.06 -0.85 9.76 22.54 0.22 -0.63 16 20 C -0.04 -0.78 5.73 -21.36 -0.12 -0.90 16 21 C 0.28 6.40 15.33 88.33 1.35 7.75 16 22 N -0.47 -12.93 18.54 19.00 0.35 -12.58 16 23 C -0.07 -1.43 9.37 22.54 0.21 -1.22 16 24 H 0.05 1.59 7.64 -2.39 -0.02 1.57 16 25 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 26 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.42 11.86 7.08 -96.75 -0.68 11.17 16 28 H 0.30 15.67 8.31 -92.71 -0.77 14.90 16 29 H 0.14 2.07 6.81 -2.91 -0.02 2.05 16 30 H 0.17 0.97 8.06 -2.91 -0.02 0.94 16 31 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 32 H 0.14 2.76 8.03 -2.91 -0.02 2.74 16 Total: -1.00 -76.82 305.85 1.32 -75.50 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.48 Total: 18.22 kcal Atomic # 6 Polarization: -50.89 SS G_CDS: 3.92 Total: -46.97 kcal Atomic # 7 Polarization: -104.00 SS G_CDS: -0.30 Total: -104.30 kcal Atomic # 8 Polarization: -118.41 SS G_CDS: -4.52 Total: -122.93 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.77 kcal Atomic # 16 Polarization: 138.00 SS G_CDS: -0.28 Total: 137.72 kcal Total: -76.82 1.32 -75.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192993789.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.518 kcal (2) G-P(sol) polarization free energy of solvation -76.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds