Wall clock time and date at job start Tue Mar 31 2020 01:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47515 * 2 1 4 4 C 1.47201 * 109.47402 * 239.99539 * 2 1 3 5 5 N 2.60800 * 109.47305 * 239.99787 * 2 1 3 6 6 S 1.81396 * 109.47125 * 119.99883 * 2 1 3 7 7 O 1.42104 * 110.54616 * 193.37568 * 6 2 1 8 8 O 1.42098 * 110.54777 * 56.62334 * 6 2 1 9 9 N 1.65603 * 104.45013 * 304.99766 * 6 2 1 10 10 C 1.38736 * 119.99615 * 65.88969 * 9 6 2 11 11 C 1.38754 * 120.29396 * 35.79150 * 10 9 6 12 12 C 1.38167 * 120.02386 * 180.02562 * 11 10 9 13 13 C 1.38900 * 120.62653 * 359.97438 * 12 11 10 14 14 C 1.36449 * 120.59711 * 0.02562 * 13 12 11 15 15 C 1.40725 * 119.95222 * 359.71841 * 14 13 12 16 16 C 1.41040 * 120.30871 * 180.27837 * 15 14 13 17 17 H 1.08004 * 120.00208 * 205.78333 * 16 15 14 18 18 C 1.39929 * 119.99905 * 25.77691 * 16 15 14 19 19 N 1.30869 * 120.00140 * 16.61956 * 18 16 15 20 20 Si 1.86804 * 119.99856 * 196.61959 * 18 16 15 21 21 H 1.48502 * 109.47154 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47115 * 120.00289 * 20 18 16 23 23 H 1.48501 * 109.46810 * 239.99966 * 20 18 16 24 24 H 1.08995 * 109.47300 * 300.00093 * 1 2 3 25 25 H 1.08996 * 109.47070 * 60.00419 * 1 2 3 26 26 H 1.09004 * 109.46818 * 180.02562 * 1 2 3 27 27 H 0.96994 * 120.00227 * 245.61456 * 9 6 2 28 28 H 1.08001 * 119.98499 * 0.02562 * 11 10 9 29 29 H 1.08001 * 119.68324 * 179.97438 * 12 11 10 30 30 H 1.07999 * 119.69961 * 179.97438 * 13 12 11 31 31 H 1.08002 * 120.01784 * 179.97438 * 14 13 12 32 32 H 0.97003 * 120.00208 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0207 -0.6940 -1.2018 5 7 2.3994 -1.2295 -2.1294 6 16 2.1346 -0.8551 1.4811 7 8 3.5214 -0.6078 1.6685 8 8 1.6107 -2.1745 1.5441 9 7 1.4052 -0.0655 2.7408 10 6 0.0280 -0.1300 2.8957 11 6 -0.6577 -1.2948 2.5823 12 6 -2.0294 -1.3528 2.7381 13 6 -2.7352 -0.2527 3.2081 14 6 -2.0866 0.9055 3.5240 15 6 -0.6893 0.9900 3.3798 16 6 -0.0106 2.1815 3.7096 17 1 0.9337 2.4131 3.2392 18 6 -0.5605 3.0637 4.6463 19 7 -1.5112 2.6572 5.4486 20 14 0.0622 4.8218 4.7514 21 1 1.1326 5.0289 3.7431 22 1 -1.0574 5.7602 4.4855 23 1 0.6071 5.0734 6.1098 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.9412 0.4388 3.3727 28 1 -0.1191 -2.1565 2.2165 29 1 -2.5576 -2.2621 2.4922 30 1 -3.8072 -0.3144 3.3238 31 1 -2.6448 1.7553 3.8882 32 1 -1.8922 3.2686 6.0981 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193150248.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:26 Heat of formation + Delta-G solvation = -18.148369 kcal Electronic energy + Delta-G solvation = -19942.776056 eV Core-core repulsion = 16802.720034 eV Total energy + Delta-G solvation = -3140.056021 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.47265 -37.08123 -36.87377 -35.79744 -34.30639 -33.80679 -32.98441 -29.83346 -28.16916 -25.38710 -24.80489 -21.56527 -20.89778 -19.58265 -18.13746 -17.59722 -17.15702 -16.85710 -16.03010 -15.34865 -15.12225 -14.48932 -14.19051 -13.65264 -13.39421 -13.27463 -12.96282 -12.78871 -12.73937 -12.48489 -11.98312 -11.93888 -11.76530 -11.67617 -11.54877 -11.36630 -11.14166 -11.02555 -10.62714 -10.57771 -10.09228 -9.82018 -9.42254 -9.37364 -7.65257 -7.27254 -6.94002 -4.58306 0.23067 2.53315 2.56799 2.60581 2.74128 2.93334 2.95568 2.98316 3.05235 3.48382 3.73888 4.01845 4.30836 4.40617 4.89117 4.98068 5.35621 5.70540 5.84887 6.02685 6.19468 6.32417 6.41153 6.63995 6.81628 6.94198 7.01517 7.26297 7.27162 7.47088 7.74265 7.85504 7.94307 8.01553 8.37628 8.58086 8.69529 9.92421 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.019324 B = 0.006938 C = 0.005969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.642319 B = 4034.530020 C = 4689.908495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.505 4.505 3 H 0.172 0.828 4 C 0.219 3.781 5 N -0.406 5.406 6 S 2.602 3.398 7 O -0.960 6.960 8 O -0.935 6.935 9 N -1.005 6.005 10 C 0.005 3.995 11 C -0.129 4.129 12 C -0.216 4.216 13 C -0.109 4.109 14 C -0.146 4.146 15 C 0.108 3.892 16 C -0.455 4.455 17 H 0.083 0.917 18 C 0.077 3.923 19 N -0.781 5.781 20 Si 0.907 3.093 21 H -0.259 1.259 22 H -0.271 1.271 23 H -0.273 1.273 24 H 0.115 0.885 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.423 0.577 28 H 0.140 0.860 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.121 0.879 32 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.507 1.178 -3.562 3.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.611 4.611 3 H 0.189 0.811 4 C -0.100 4.100 5 N -0.083 5.083 6 S 2.691 3.309 7 O -0.950 6.950 8 O -0.925 6.925 9 N -0.758 5.758 10 C -0.093 4.093 11 C -0.150 4.150 12 C -0.236 4.236 13 C -0.128 4.128 14 C -0.166 4.166 15 C 0.102 3.898 16 C -0.485 4.485 17 H 0.101 0.899 18 C -0.143 4.143 19 N -0.406 5.406 20 Si 0.731 3.269 21 H -0.182 1.182 22 H -0.196 1.196 23 H -0.198 1.198 24 H 0.134 0.866 25 H 0.093 0.907 26 H 0.100 0.900 27 H 0.262 0.738 28 H 0.157 0.843 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.139 0.861 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.563 -0.373 -4.912 5.168 hybrid contribution -0.136 1.966 0.478 2.028 sum 1.427 1.593 -4.434 4.923 Atomic orbital electron populations 1.22031 0.86078 1.05463 1.06765 1.28710 1.09224 1.13281 1.09853 0.81092 1.27721 0.93740 0.94041 0.94497 1.81213 1.08458 1.08912 1.09686 1.06324 0.73526 0.76102 0.74930 1.93566 1.31276 1.86092 1.84058 1.93515 1.79581 1.34618 1.84782 1.52255 1.14887 1.70125 1.38542 1.17218 0.80257 0.94778 1.17078 1.21548 0.95412 0.96046 1.02011 1.20305 0.93636 0.98570 1.11139 1.20552 0.97948 0.94366 0.99960 1.21003 0.93929 0.97802 1.03897 1.17513 0.91635 0.90252 0.90397 1.19496 1.06591 1.02452 1.19928 0.89894 1.25933 0.93936 1.00617 0.93836 1.69825 1.20727 1.36509 1.13506 0.86267 0.79886 0.81496 0.79247 1.18204 1.19600 1.19848 0.86624 0.90746 0.90024 0.73805 0.84298 0.88737 0.89179 0.86089 0.90511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 7.69 37.15 0.29 -1.68 16 2 C -0.50 -6.75 3.44 -29.52 -0.10 -6.86 16 3 H 0.17 1.73 8.14 -51.92 -0.42 1.31 16 4 C 0.22 3.30 14.65 -20.76 -0.30 3.00 16 5 N -0.41 -6.79 18.54 42.15 0.78 -6.01 16 6 S 2.60 42.03 4.94 -107.50 -0.53 41.50 16 7 O -0.96 -17.26 18.08 -57.54 -1.04 -18.30 16 8 O -0.94 -17.24 14.67 -57.54 -0.84 -18.08 16 9 N -1.01 -17.20 5.23 32.72 0.17 -17.02 16 10 C 0.00 0.09 3.93 -83.29 -0.33 -0.23 16 11 C -0.13 -2.50 7.12 -39.42 -0.28 -2.78 16 12 C -0.22 -4.16 10.04 -39.36 -0.40 -4.55 16 13 C -0.11 -2.16 9.96 -39.98 -0.40 -2.56 16 14 C -0.15 -3.17 8.63 -39.29 -0.34 -3.51 16 15 C 0.11 2.33 5.14 -106.64 -0.55 1.78 16 16 C -0.45 -9.75 8.41 -37.89 -0.32 -10.07 16 17 H 0.08 1.63 7.35 -52.48 -0.39 1.25 16 18 C 0.08 1.63 5.15 -17.33 -0.09 1.54 16 19 N -0.78 -17.50 10.97 55.55 0.61 -16.89 16 20 Si 0.91 16.15 29.59 -169.99 -5.03 11.12 16 21 H -0.26 -4.53 7.11 56.52 0.40 -4.13 16 22 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 23 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 24 H 0.12 1.74 4.84 -51.93 -0.25 1.49 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.08 1.13 7.45 -51.93 -0.39 0.74 16 27 H 0.42 6.84 8.08 -34.47 -0.28 6.57 16 28 H 0.14 2.67 4.97 -52.49 -0.26 2.41 16 29 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 30 H 0.09 1.60 8.06 -52.49 -0.42 1.18 16 31 H 0.12 2.74 6.21 -52.49 -0.33 2.42 16 32 H 0.28 5.81 8.30 -40.82 -0.34 5.47 16 LS Contribution 287.09 15.07 4.33 4.33 Total: -1.00 -26.78 287.09 -7.09 -33.87 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -2.71 Total: 11.41 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: -2.82 Total: -25.92 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 1.56 Total: -39.92 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -1.88 Total: -36.37 kcal Atomic # 14 Polarization: 16.15 SS G_CDS: -5.03 Total: 11.12 kcal Atomic # 16 Polarization: 42.03 SS G_CDS: -0.53 Total: 41.50 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -26.78 -7.09 -33.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193150248.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.720 kcal (2) G-P(sol) polarization free energy of solvation -26.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds