Wall clock time and date at job start Tue Mar 31 2020 01:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47515 * 2 1 4 4 C 1.47201 * 109.47402 * 239.99539 * 2 1 3 5 5 N 2.60800 * 109.47305 * 239.99787 * 2 1 3 6 6 S 1.81396 * 109.47125 * 119.99883 * 2 1 3 7 7 O 1.42104 * 110.54616 * 193.37568 * 6 2 1 8 8 O 1.42098 * 110.54777 * 56.62334 * 6 2 1 9 9 N 1.65603 * 104.45013 * 304.99766 * 6 2 1 10 10 C 1.38736 * 119.99615 * 65.88969 * 9 6 2 11 11 C 1.38754 * 120.29396 * 35.79150 * 10 9 6 12 12 C 1.38167 * 120.02386 * 180.02562 * 11 10 9 13 13 C 1.38900 * 120.62653 * 359.97438 * 12 11 10 14 14 C 1.36449 * 120.59711 * 0.02562 * 13 12 11 15 15 C 1.40725 * 119.95222 * 359.71841 * 14 13 12 16 16 C 1.41040 * 120.30871 * 180.27837 * 15 14 13 17 17 H 1.08004 * 120.00208 * 205.78333 * 16 15 14 18 18 C 1.39929 * 119.99905 * 25.77691 * 16 15 14 19 19 N 1.30869 * 120.00140 * 16.61956 * 18 16 15 20 20 Si 1.86804 * 119.99856 * 196.61959 * 18 16 15 21 21 H 1.48502 * 109.47154 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47115 * 120.00289 * 20 18 16 23 23 H 1.48501 * 109.46810 * 239.99966 * 20 18 16 24 24 H 1.08995 * 109.47300 * 300.00093 * 1 2 3 25 25 H 1.08996 * 109.47070 * 60.00419 * 1 2 3 26 26 H 1.09004 * 109.46818 * 180.02562 * 1 2 3 27 27 H 0.96994 * 120.00227 * 245.61456 * 9 6 2 28 28 H 1.08001 * 119.98499 * 0.02562 * 11 10 9 29 29 H 1.08001 * 119.68324 * 179.97438 * 12 11 10 30 30 H 1.07999 * 119.69961 * 179.97438 * 13 12 11 31 31 H 1.08002 * 120.01784 * 179.97438 * 14 13 12 32 32 H 0.97003 * 120.00208 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0207 -0.6940 -1.2018 5 7 2.3994 -1.2295 -2.1294 6 16 2.1346 -0.8551 1.4811 7 8 3.5214 -0.6078 1.6685 8 8 1.6107 -2.1745 1.5441 9 7 1.4052 -0.0655 2.7408 10 6 0.0280 -0.1300 2.8957 11 6 -0.6577 -1.2948 2.5823 12 6 -2.0294 -1.3528 2.7381 13 6 -2.7352 -0.2527 3.2081 14 6 -2.0866 0.9055 3.5240 15 6 -0.6893 0.9900 3.3798 16 6 -0.0106 2.1815 3.7096 17 1 0.9337 2.4131 3.2392 18 6 -0.5605 3.0637 4.6463 19 7 -1.5112 2.6572 5.4486 20 14 0.0622 4.8218 4.7514 21 1 1.1326 5.0289 3.7431 22 1 -1.0574 5.7602 4.4855 23 1 0.6071 5.0734 6.1098 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.9412 0.4388 3.3727 28 1 -0.1191 -2.1565 2.2165 29 1 -2.5576 -2.2621 2.4922 30 1 -3.8072 -0.3144 3.3238 31 1 -2.6448 1.7553 3.8882 32 1 -1.8922 3.2686 6.0981 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193150248.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:25 Heat of formation + Delta-G solvation = -35.006328 kcal Electronic energy + Delta-G solvation = -19943.507072 eV Core-core repulsion = 16802.720034 eV Total energy + Delta-G solvation = -3140.787037 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.98832 -38.39230 -38.24959 -37.21757 -35.77883 -35.34123 -34.19632 -31.40797 -29.69630 -26.95099 -25.97459 -23.11485 -22.42018 -20.95621 -19.46988 -19.09330 -18.51881 -18.31260 -17.34941 -16.82714 -16.50206 -15.96058 -15.47954 -15.12944 -14.71357 -14.56297 -14.45564 -14.27732 -14.04285 -13.80555 -13.38389 -13.36044 -13.22627 -13.00992 -12.87212 -12.78879 -12.55618 -12.45726 -12.04450 -11.89863 -11.50434 -11.34863 -10.98258 -10.90201 -9.24377 -8.81643 -8.48361 -6.19748 -1.10103 1.04349 1.17356 1.32156 1.38803 1.50428 1.58775 1.60098 1.61990 2.22854 2.27323 2.72451 2.84217 3.05327 3.67117 3.77391 3.94823 4.54844 4.67598 4.69273 4.74654 4.82803 5.14203 5.24533 5.27873 5.38908 5.46250 5.74667 5.92436 6.05207 6.20011 6.31117 6.39411 6.45670 6.80853 7.00080 7.12539 8.39693 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.019324 B = 0.006938 C = 0.005969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.642319 B = 4034.530020 C = 4689.908495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.484 4.484 3 H 0.213 0.787 4 C 0.232 3.768 5 N -0.430 5.430 6 S 2.622 3.378 7 O -0.975 6.975 8 O -0.960 6.960 9 N -1.010 6.010 10 C 0.019 3.981 11 C -0.138 4.138 12 C -0.215 4.215 13 C -0.114 4.114 14 C -0.168 4.168 15 C 0.087 3.913 16 C -0.479 4.479 17 H 0.095 0.905 18 C 0.040 3.960 19 N -0.820 5.820 20 Si 0.969 3.031 21 H -0.250 1.250 22 H -0.272 1.272 23 H -0.277 1.277 24 H 0.103 0.897 25 H 0.100 0.900 26 H 0.077 0.923 27 H 0.427 0.573 28 H 0.144 0.856 29 H 0.116 0.884 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.133 1.551 -4.754 5.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.594 4.594 3 H 0.230 0.770 4 C -0.086 4.086 5 N -0.108 5.108 6 S 2.714 3.286 7 O -0.965 6.965 8 O -0.949 6.949 9 N -0.763 5.763 10 C -0.079 4.079 11 C -0.159 4.159 12 C -0.235 4.235 13 C -0.133 4.133 14 C -0.188 4.188 15 C 0.081 3.919 16 C -0.508 4.508 17 H 0.113 0.887 18 C -0.176 4.176 19 N -0.446 5.446 20 Si 0.791 3.209 21 H -0.173 1.173 22 H -0.198 1.198 23 H -0.202 1.202 24 H 0.121 0.879 25 H 0.119 0.881 26 H 0.096 0.904 27 H 0.266 0.734 28 H 0.161 0.839 29 H 0.134 0.866 30 H 0.125 0.875 31 H 0.122 0.878 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.178 -0.012 -6.054 6.434 hybrid contribution -0.285 1.711 0.724 1.879 sum 1.893 1.699 -5.330 5.906 Atomic orbital electron populations 1.22063 0.85698 1.05517 1.07423 1.28533 1.09302 1.14700 1.06817 0.77023 1.27811 0.93059 0.93420 0.94358 1.81244 1.09261 1.09594 1.10663 1.05253 0.72773 0.75271 0.75322 1.93561 1.31938 1.86220 1.84735 1.93485 1.79768 1.36223 1.85463 1.52200 1.13947 1.70034 1.40086 1.17166 0.81028 0.94140 1.15561 1.21687 0.95723 0.96121 1.02391 1.20577 0.93762 0.99046 1.10112 1.20736 0.98939 0.93993 0.99612 1.20987 0.94394 0.98084 1.05333 1.17714 0.91823 0.91116 0.91222 1.19765 1.07383 1.03057 1.20645 0.88704 1.26627 0.93956 1.03674 0.93357 1.69891 1.22395 1.37705 1.14590 0.85333 0.79298 0.77311 0.78935 1.17328 1.19752 1.20246 0.87899 0.88141 0.90372 0.73445 0.83881 0.86620 0.87521 0.87815 0.90321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 7.69 71.98 0.55 -3.05 16 2 C -0.48 -11.40 3.44 28.79 0.10 -11.30 16 3 H 0.21 3.34 8.14 -2.39 -0.02 3.32 16 4 C 0.23 6.34 14.65 89.44 1.31 7.65 16 5 N -0.43 -13.42 18.54 20.01 0.37 -13.05 16 6 S 2.62 79.44 4.94 -56.49 -0.28 79.16 16 7 O -0.97 -33.02 18.08 -127.65 -2.31 -35.33 16 8 O -0.96 -33.87 14.67 -127.65 -1.87 -35.74 16 9 N -1.01 -33.19 5.23 -50.39 -0.26 -33.46 16 10 C 0.02 0.71 3.93 38.99 0.15 0.86 16 11 C -0.14 -5.19 7.12 22.38 0.16 -5.03 16 12 C -0.21 -7.98 10.04 22.41 0.22 -7.76 16 13 C -0.11 -4.46 9.96 22.01 0.22 -4.24 16 14 C -0.17 -7.37 8.63 22.46 0.19 -7.17 16 15 C 0.09 3.75 5.14 -21.17 -0.11 3.64 16 16 C -0.48 -20.45 8.41 23.37 0.20 -20.25 16 17 H 0.09 3.65 7.35 -2.91 -0.02 3.63 16 18 C 0.04 1.71 5.15 85.25 0.44 2.15 16 19 N -0.82 -37.59 10.97 21.83 0.24 -37.35 16 20 Si 0.97 32.92 29.59 68.60 2.03 34.95 16 21 H -0.25 -8.05 7.11 99.48 0.71 -7.34 16 22 H -0.27 -9.20 7.11 99.48 0.71 -8.50 16 23 H -0.28 -9.47 7.11 99.48 0.71 -8.76 16 24 H 0.10 2.89 4.84 -2.39 -0.01 2.87 16 25 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.08 1.97 7.45 -2.38 -0.02 1.95 16 27 H 0.43 13.35 8.08 -96.75 -0.78 12.57 16 28 H 0.14 5.30 4.97 -2.91 -0.01 5.28 16 29 H 0.12 3.75 8.06 -2.91 -0.02 3.72 16 30 H 0.11 3.72 8.06 -2.91 -0.02 3.70 16 31 H 0.10 4.87 6.21 -2.91 -0.02 4.85 16 32 H 0.29 12.05 8.30 -92.71 -0.77 11.28 16 Total: -1.00 -56.58 287.09 1.76 -54.82 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: 0.40 Total: 30.52 kcal Atomic # 6 Polarization: -47.95 SS G_CDS: 3.44 Total: -44.51 kcal Atomic # 7 Polarization: -84.21 SS G_CDS: 0.35 Total: -83.86 kcal Atomic # 8 Polarization: -66.89 SS G_CDS: -4.18 Total: -71.07 kcal Atomic # 14 Polarization: 32.92 SS G_CDS: 2.03 Total: 34.95 kcal Atomic # 16 Polarization: 79.44 SS G_CDS: -0.28 Total: 79.16 kcal Total: -56.58 1.76 -54.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193150248.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.811 kcal (2) G-P(sol) polarization free energy of solvation -56.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds