Wall clock time and date at job start Tue Mar 31 2020 01:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47032 * 2 1 4 4 C 1.47203 * 109.47265 * 119.99860 * 2 1 3 5 5 N 2.60797 * 109.47243 * 120.00013 * 2 1 3 6 6 S 1.81398 * 109.46983 * 239.99759 * 2 1 3 7 7 O 1.42091 * 110.54759 * 308.37773 * 6 2 1 8 8 O 1.42104 * 110.54388 * 171.62058 * 6 2 1 9 9 N 1.65603 * 104.44973 * 60.00404 * 6 2 1 10 10 C 1.38731 * 119.99921 * 60.39827 * 9 6 2 11 11 C 1.38749 * 120.29592 * 35.37679 * 10 9 6 12 12 C 1.38158 * 120.02422 * 180.27445 * 11 10 9 13 13 C 1.38906 * 120.63147 * 359.48363 * 12 11 10 14 14 C 1.36445 * 120.59081 * 0.51903 * 13 12 11 15 15 C 1.40737 * 119.95417 * 359.74221 * 14 13 12 16 16 C 1.41045 * 120.30738 * 180.02562 * 15 14 13 17 17 H 1.07992 * 120.00260 * 152.13847 * 16 15 14 18 18 C 1.39931 * 120.00016 * 332.13217 * 16 15 14 19 19 N 1.30881 * 120.00236 * 163.83253 * 18 16 15 20 20 Si 1.86801 * 120.00085 * 343.84139 * 18 16 15 21 21 H 1.48496 * 109.47356 * 95.45432 * 20 18 16 22 22 H 1.48501 * 109.47162 * 215.45710 * 20 18 16 23 23 H 1.48506 * 109.46942 * 335.45690 * 20 18 16 24 24 H 1.09003 * 109.47032 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46802 * 299.99953 * 1 2 3 26 26 H 1.09000 * 109.47351 * 59.99684 * 1 2 3 27 27 H 0.97005 * 119.99807 * 240.40345 * 9 6 2 28 28 H 1.07995 * 119.98727 * 359.97438 * 11 10 9 29 29 H 1.08003 * 119.68955 * 179.74651 * 12 11 10 30 30 H 1.07997 * 119.70733 * 180.28136 * 13 12 11 31 31 H 1.08006 * 120.02199 * 179.76610 * 14 13 12 32 32 H 0.96998 * 120.00338 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 1.2019 5 7 2.3994 -1.2294 2.1294 6 16 2.1346 -0.8552 -1.4811 7 8 1.5220 -2.1313 -1.6052 8 8 3.5420 -0.7029 -1.6052 9 7 1.5165 0.0191 -2.7444 10 6 1.8492 1.3581 -2.8898 11 6 3.1186 1.8046 -2.5518 12 6 3.4422 3.1402 -2.6935 13 6 2.5100 4.0461 -3.1832 14 6 1.2543 3.6348 -3.5234 15 6 0.8965 2.2809 -3.3840 16 6 -0.3993 1.8474 -3.7339 17 1 -0.5587 0.8306 -4.0609 18 6 -1.4785 2.7349 -3.6571 19 7 -2.6021 2.4532 -4.2662 20 14 -1.3153 4.3220 -2.6854 21 1 -0.9414 5.4280 -3.6030 22 1 -2.6108 4.6376 -2.0317 23 1 -0.2639 4.1619 -1.6489 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 0.9217 -0.4050 -3.3826 28 1 3.8526 1.1086 -2.1732 29 1 4.4306 3.4826 -2.4248 30 1 2.7803 5.0860 -3.2922 31 1 0.5355 4.3477 -3.8998 32 1 -3.3501 3.0685 -4.2133 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193150249.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:29 Heat of formation + Delta-G solvation = -20.596734 kcal Electronic energy + Delta-G solvation = -19953.233802 eV Core-core repulsion = 16813.071612 eV Total energy + Delta-G solvation = -3140.162191 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.56963 -37.16863 -36.96199 -35.87348 -34.39710 -33.87423 -33.11854 -30.68424 -28.40082 -25.29829 -24.92572 -22.12882 -20.85532 -19.68025 -18.21730 -17.66754 -17.39513 -17.03012 -16.33025 -15.47751 -14.98260 -14.45354 -14.32928 -13.99143 -13.55994 -13.35799 -13.33043 -12.87727 -12.80031 -12.47788 -12.30433 -12.03135 -11.93474 -11.88101 -11.75079 -11.69405 -11.18783 -11.00965 -10.67146 -10.45289 -10.26432 -10.00412 -9.73655 -9.27581 -7.92361 -7.47946 -7.20204 -4.70652 0.15579 2.34314 2.42642 2.49674 2.56546 2.82864 2.93943 3.05426 3.12184 3.39936 3.75194 3.93528 4.23870 4.28220 4.79693 4.96797 5.09503 5.56137 5.67273 5.82344 5.89232 5.96587 6.10547 6.40041 6.40724 6.58201 6.92263 7.05473 7.20319 7.22238 7.47881 7.61620 7.62873 7.87861 8.06416 8.36379 8.50592 9.80427 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.018961 B = 0.007521 C = 0.006751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.383860 B = 3721.776179 C = 4146.803936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.505 4.505 3 H 0.178 0.822 4 C 0.219 3.781 5 N -0.403 5.403 6 S 2.607 3.393 7 O -0.952 6.952 8 O -0.940 6.940 9 N -1.008 6.008 10 C 0.021 3.979 11 C -0.124 4.124 12 C -0.220 4.220 13 C -0.081 4.081 14 C -0.222 4.222 15 C 0.090 3.910 16 C -0.435 4.435 17 H 0.095 0.905 18 C 0.083 3.917 19 N -0.795 5.795 20 Si 0.910 3.090 21 H -0.270 1.270 22 H -0.291 1.291 23 H -0.239 1.239 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.107 0.893 27 H 0.426 0.574 28 H 0.137 0.863 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.323 1.044 3.867 4.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.611 4.611 3 H 0.195 0.805 4 C -0.100 4.100 5 N -0.080 5.080 6 S 2.696 3.304 7 O -0.942 6.942 8 O -0.929 6.929 9 N -0.761 5.761 10 C -0.077 4.077 11 C -0.146 4.146 12 C -0.241 4.241 13 C -0.100 4.100 14 C -0.241 4.241 15 C 0.083 3.917 16 C -0.464 4.464 17 H 0.113 0.887 18 C -0.138 4.138 19 N -0.418 5.418 20 Si 0.737 3.263 21 H -0.196 1.196 22 H -0.219 1.219 23 H -0.162 1.162 24 H 0.098 0.902 25 H 0.100 0.900 26 H 0.126 0.874 27 H 0.265 0.735 28 H 0.155 0.845 29 H 0.119 0.881 30 H 0.114 0.886 31 H 0.121 0.879 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.238 -0.570 5.314 6.249 hybrid contribution -0.949 1.540 -0.052 1.809 sum 2.289 0.970 5.263 5.820 Atomic orbital electron populations 1.21658 0.86452 1.04966 1.06666 1.28469 1.08888 1.14094 1.09665 0.80473 1.27615 0.93846 0.94017 0.94495 1.81219 1.08221 1.08943 1.09568 1.06013 0.75374 0.74024 0.74950 1.93570 1.77905 1.38016 1.84680 1.93553 1.29223 1.85902 1.84260 1.52328 1.64850 1.20073 1.38881 1.17218 0.94548 0.82475 1.13440 1.21519 0.93963 0.97285 1.01855 1.20284 0.99225 0.93066 1.11493 1.20452 0.93940 0.97889 0.97742 1.20684 0.96828 0.96205 1.10433 1.17583 0.92666 0.90589 0.90839 1.19358 0.90137 1.00024 1.36851 0.88671 1.26202 0.94662 0.99506 0.93463 1.69683 1.03823 1.37063 1.31212 0.86332 0.77921 0.80584 0.81477 1.19590 1.21865 1.16211 0.90241 0.89985 0.87447 0.73519 0.84518 0.88073 0.88565 0.87901 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.02 37.16 0.34 -1.38 16 2 C -0.50 -6.82 3.15 -29.52 -0.09 -6.92 16 3 H 0.18 2.09 8.14 -51.92 -0.42 1.66 16 4 C 0.22 3.28 14.65 -20.76 -0.30 2.98 16 5 N -0.40 -6.66 18.54 42.15 0.78 -5.87 16 6 S 2.61 41.66 4.62 -107.50 -0.50 41.17 16 7 O -0.95 -16.87 17.96 -57.54 -1.03 -17.90 16 8 O -0.94 -16.92 15.02 -57.54 -0.86 -17.78 16 9 N -1.01 -16.90 5.05 32.72 0.17 -16.73 16 10 C 0.02 0.39 6.16 -83.29 -0.51 -0.12 16 11 C -0.12 -2.31 9.24 -39.42 -0.36 -2.67 16 12 C -0.22 -3.98 10.03 -39.36 -0.39 -4.37 16 13 C -0.08 -1.50 9.97 -39.98 -0.40 -1.90 16 14 C -0.22 -4.53 6.98 -39.28 -0.27 -4.81 16 15 C 0.09 1.87 5.19 -106.63 -0.55 1.32 16 16 C -0.43 -9.58 9.17 -37.88 -0.35 -9.93 16 17 H 0.10 2.14 7.01 -52.49 -0.37 1.77 16 18 C 0.08 1.84 5.44 -17.32 -0.09 1.74 16 19 N -0.79 -18.38 13.93 55.55 0.77 -17.61 16 20 Si 0.91 17.76 24.40 -169.99 -4.15 13.61 16 21 H -0.27 -5.22 6.72 56.52 0.38 -4.84 16 22 H -0.29 -5.60 7.11 56.52 0.40 -5.20 16 23 H -0.24 -4.61 6.66 56.52 0.38 -4.23 16 24 H 0.08 0.92 8.11 -51.93 -0.42 0.50 16 25 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.11 1.40 7.91 -51.93 -0.41 0.98 16 27 H 0.43 6.78 7.66 -34.47 -0.26 6.51 16 28 H 0.14 2.46 5.16 -52.49 -0.27 2.19 16 29 H 0.10 1.60 8.06 -52.48 -0.42 1.17 16 30 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 31 H 0.10 2.11 4.31 -52.48 -0.23 1.88 16 32 H 0.29 6.10 8.30 -40.82 -0.34 5.76 16 LS Contribution 289.86 15.07 4.37 4.37 Total: -1.00 -26.80 289.86 -6.29 -33.09 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -2.83 Total: 9.72 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: -3.00 Total: -26.06 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 1.72 Total: -40.22 kcal Atomic # 8 Polarization: -33.79 SS G_CDS: -1.90 Total: -35.68 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -4.15 Total: 13.61 kcal Atomic # 16 Polarization: 41.66 SS G_CDS: -0.50 Total: 41.17 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -26.80 -6.29 -33.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193150249.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.494 kcal (2) G-P(sol) polarization free energy of solvation -26.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds