Wall clock time and date at job start Tue Mar 31 2020 01:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47032 * 2 1 4 4 C 1.47203 * 109.47265 * 119.99860 * 2 1 3 5 5 N 2.60797 * 109.47243 * 120.00013 * 2 1 3 6 6 S 1.81398 * 109.46983 * 239.99759 * 2 1 3 7 7 O 1.42091 * 110.54759 * 308.37773 * 6 2 1 8 8 O 1.42104 * 110.54388 * 171.62058 * 6 2 1 9 9 N 1.65603 * 104.44973 * 60.00404 * 6 2 1 10 10 C 1.38731 * 119.99921 * 60.39827 * 9 6 2 11 11 C 1.38749 * 120.29592 * 35.37679 * 10 9 6 12 12 C 1.38158 * 120.02422 * 180.27445 * 11 10 9 13 13 C 1.38906 * 120.63147 * 359.48363 * 12 11 10 14 14 C 1.36445 * 120.59081 * 0.51903 * 13 12 11 15 15 C 1.40737 * 119.95417 * 359.74221 * 14 13 12 16 16 C 1.41045 * 120.30738 * 180.02562 * 15 14 13 17 17 H 1.07992 * 120.00260 * 152.13847 * 16 15 14 18 18 C 1.39931 * 120.00016 * 332.13217 * 16 15 14 19 19 N 1.30881 * 120.00236 * 163.83253 * 18 16 15 20 20 Si 1.86801 * 120.00085 * 343.84139 * 18 16 15 21 21 H 1.48496 * 109.47356 * 95.45432 * 20 18 16 22 22 H 1.48501 * 109.47162 * 215.45710 * 20 18 16 23 23 H 1.48506 * 109.46942 * 335.45690 * 20 18 16 24 24 H 1.09003 * 109.47032 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46802 * 299.99953 * 1 2 3 26 26 H 1.09000 * 109.47351 * 59.99684 * 1 2 3 27 27 H 0.97005 * 119.99807 * 240.40345 * 9 6 2 28 28 H 1.07995 * 119.98727 * 359.97438 * 11 10 9 29 29 H 1.08003 * 119.68955 * 179.74651 * 12 11 10 30 30 H 1.07997 * 119.70733 * 180.28136 * 13 12 11 31 31 H 1.08006 * 120.02199 * 179.76610 * 14 13 12 32 32 H 0.96998 * 120.00338 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 1.2019 5 7 2.3994 -1.2294 2.1294 6 16 2.1346 -0.8552 -1.4811 7 8 1.5220 -2.1313 -1.6052 8 8 3.5420 -0.7029 -1.6052 9 7 1.5165 0.0191 -2.7444 10 6 1.8492 1.3581 -2.8898 11 6 3.1186 1.8046 -2.5518 12 6 3.4422 3.1402 -2.6935 13 6 2.5100 4.0461 -3.1832 14 6 1.2543 3.6348 -3.5234 15 6 0.8965 2.2809 -3.3840 16 6 -0.3993 1.8474 -3.7339 17 1 -0.5587 0.8306 -4.0609 18 6 -1.4785 2.7349 -3.6571 19 7 -2.6021 2.4532 -4.2662 20 14 -1.3153 4.3220 -2.6854 21 1 -0.9414 5.4280 -3.6030 22 1 -2.6108 4.6376 -2.0317 23 1 -0.2639 4.1619 -1.6489 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 0.9217 -0.4050 -3.3826 28 1 3.8526 1.1086 -2.1732 29 1 4.4306 3.4826 -2.4248 30 1 2.7803 5.0860 -3.2922 31 1 0.5355 4.3477 -3.8998 32 1 -3.3501 3.0685 -4.2133 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193150249.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:28 Heat of formation + Delta-G solvation = -38.286719 kcal Electronic energy + Delta-G solvation = -19954.000897 eV Core-core repulsion = 16813.071612 eV Total energy + Delta-G solvation = -3140.929286 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.06734 -38.46993 -38.30425 -37.27310 -35.81240 -35.45128 -34.29026 -32.23996 -29.87132 -26.83276 -26.05880 -23.63043 -22.34600 -21.02483 -19.55376 -19.19997 -18.75824 -18.45257 -17.58525 -16.94218 -16.36917 -15.87739 -15.65593 -15.46600 -14.98288 -14.71034 -14.54787 -14.37436 -14.04703 -13.82288 -13.78470 -13.43059 -13.32533 -13.19570 -13.09424 -12.78693 -12.73465 -12.52472 -12.03438 -11.84089 -11.67418 -11.52105 -11.28798 -10.79267 -9.46960 -8.96241 -8.81465 -6.34922 -1.16339 0.83878 0.88564 1.29021 1.34447 1.38651 1.50375 1.52220 1.59569 2.14991 2.19027 2.64029 2.71130 3.00977 3.52475 3.60961 3.90920 4.39135 4.41705 4.55673 4.61332 4.66941 4.87970 4.99145 5.08551 5.14560 5.38006 5.59495 5.71716 5.95229 6.01392 6.10239 6.17042 6.34138 6.48753 6.79596 6.91081 8.24077 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.018961 B = 0.007521 C = 0.006751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.383860 B = 3721.776179 C = 4146.803936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.487 4.487 3 H 0.203 0.797 4 C 0.233 3.767 5 N -0.426 5.426 6 S 2.624 3.376 7 O -0.969 6.969 8 O -0.959 6.959 9 N -1.013 6.013 10 C 0.032 3.968 11 C -0.137 4.137 12 C -0.206 4.206 13 C -0.086 4.086 14 C -0.236 4.236 15 C 0.074 3.926 16 C -0.458 4.458 17 H 0.076 0.924 18 C 0.052 3.948 19 N -0.841 5.841 20 Si 0.951 3.049 21 H -0.269 1.269 22 H -0.290 1.290 23 H -0.232 1.232 24 H 0.085 0.915 25 H 0.105 0.895 26 H 0.101 0.899 27 H 0.428 0.572 28 H 0.146 0.854 29 H 0.131 0.869 30 H 0.125 0.875 31 H 0.099 0.901 32 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.828 2.098 5.242 6.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.597 4.597 3 H 0.220 0.780 4 C -0.086 4.086 5 N -0.103 5.103 6 S 2.715 3.285 7 O -0.959 6.959 8 O -0.949 6.949 9 N -0.765 5.765 10 C -0.065 4.065 11 C -0.159 4.159 12 C -0.226 4.226 13 C -0.105 4.105 14 C -0.256 4.256 15 C 0.068 3.932 16 C -0.488 4.488 17 H 0.094 0.906 18 C -0.164 4.164 19 N -0.467 5.467 20 Si 0.776 3.224 21 H -0.195 1.195 22 H -0.217 1.217 23 H -0.155 1.155 24 H 0.104 0.896 25 H 0.124 0.876 26 H 0.120 0.880 27 H 0.266 0.734 28 H 0.163 0.837 29 H 0.149 0.851 30 H 0.143 0.857 31 H 0.117 0.883 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.761 0.487 6.643 8.187 hybrid contribution -1.197 1.122 -0.401 1.689 sum 3.564 1.609 6.241 7.365 Atomic orbital electron populations 1.21800 0.85269 1.05800 1.07573 1.28341 1.09769 1.14564 1.07002 0.78039 1.27682 0.93163 0.93441 0.94322 1.81247 1.09017 1.09568 1.10459 1.05156 0.74555 0.73470 0.75290 1.93558 1.78129 1.38939 1.85287 1.93527 1.30399 1.86066 1.84896 1.52302 1.64800 1.19305 1.40133 1.17317 0.94412 0.82782 1.12029 1.21733 0.93769 0.98028 1.02355 1.20713 1.00257 0.92589 1.09021 1.20768 0.93074 0.99612 0.97081 1.20832 0.97840 0.95945 1.10972 1.17696 0.92533 0.91418 0.91534 1.19303 0.91088 0.99474 1.38914 0.90577 1.26729 0.94325 1.01500 0.93826 1.69728 1.04782 1.38546 1.33661 0.85698 0.77930 0.78106 0.80643 1.19512 1.21730 1.15487 0.89630 0.87603 0.88050 0.73353 0.83707 0.85136 0.85697 0.88335 0.89752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 9.02 71.98 0.65 -2.61 16 2 C -0.49 -11.88 3.15 28.79 0.09 -11.79 16 3 H 0.20 4.01 8.14 -2.39 -0.02 3.99 16 4 C 0.23 6.38 14.65 89.44 1.31 7.69 16 5 N -0.43 -13.20 18.54 20.01 0.37 -12.82 16 6 S 2.62 79.70 4.62 -56.49 -0.26 79.44 16 7 O -0.97 -33.35 17.96 -127.65 -2.29 -35.64 16 8 O -0.96 -32.70 15.02 -127.65 -1.92 -34.61 16 9 N -1.01 -33.09 5.05 -50.39 -0.25 -33.35 16 10 C 0.03 1.15 6.16 38.99 0.24 1.39 16 11 C -0.14 -4.68 9.24 22.37 0.21 -4.48 16 12 C -0.21 -6.61 10.03 22.41 0.22 -6.39 16 13 C -0.09 -2.91 9.97 22.01 0.22 -2.69 16 14 C -0.24 -9.23 6.98 22.46 0.16 -9.07 16 15 C 0.07 3.03 5.19 -21.17 -0.11 2.92 16 16 C -0.46 -20.57 9.17 23.37 0.21 -20.35 16 17 H 0.08 3.58 7.01 -2.91 -0.02 3.56 16 18 C 0.05 2.36 5.44 85.24 0.46 2.82 16 19 N -0.84 -40.25 13.93 21.83 0.30 -39.95 16 20 Si 0.95 36.01 24.40 68.60 1.67 37.68 16 21 H -0.27 -10.01 6.72 99.48 0.67 -9.34 16 22 H -0.29 -10.74 7.11 99.48 0.71 -10.03 16 23 H -0.23 -8.39 6.66 99.48 0.66 -7.73 16 24 H 0.08 1.82 8.11 -2.39 -0.02 1.80 16 25 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.10 2.49 7.91 -2.39 -0.02 2.47 16 27 H 0.43 13.73 7.66 -96.74 -0.74 12.98 16 28 H 0.15 4.76 5.16 -2.91 -0.02 4.75 16 29 H 0.13 3.44 8.06 -2.91 -0.02 3.42 16 30 H 0.13 3.47 8.06 -2.91 -0.02 3.44 16 31 H 0.10 3.91 4.31 -2.91 -0.01 3.90 16 32 H 0.29 12.77 8.30 -92.71 -0.77 12.01 16 Total: -1.00 -56.33 289.86 1.64 -54.68 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: 0.35 Total: 27.12 kcal Atomic # 6 Polarization: -46.22 SS G_CDS: 3.67 Total: -42.55 kcal Atomic # 7 Polarization: -86.54 SS G_CDS: 0.42 Total: -86.12 kcal Atomic # 8 Polarization: -66.05 SS G_CDS: -4.21 Total: -70.26 kcal Atomic # 14 Polarization: 36.01 SS G_CDS: 1.67 Total: 37.68 kcal Atomic # 16 Polarization: 79.70 SS G_CDS: -0.26 Total: 79.44 kcal Total: -56.33 1.64 -54.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193150249.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.397 kcal (2) G-P(sol) polarization free energy of solvation -56.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds