Wall clock time and date at job start Tue Mar 31 2020 01:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00064 * 2 1 4 4 H 1.48503 * 109.47386 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47516 * 300.00342 * 3 2 1 6 6 H 1.48501 * 109.46950 * 60.00250 * 3 2 1 7 7 C 1.37878 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99810 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53499 * 114.20374 * 180.02562 * 9 7 2 11 11 N 1.47074 * 87.98353 * 220.14766 * 10 9 7 12 12 C 1.34773 * 136.05846 * 207.08420 * 11 10 9 13 13 S 1.71201 * 120.00050 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99753 * 180.02562 * 12 11 10 15 15 C 1.40027 * 119.99496 * 185.30236 * 14 12 11 16 16 C 1.38809 * 120.07560 * 44.08452 * 15 14 12 17 17 C 1.38153 * 119.94923 * 179.71700 * 16 15 14 18 18 C 1.38275 * 120.11169 * 0.55048 * 17 16 15 19 19 C 1.38269 * 120.15733 * 359.72142 * 18 17 16 20 20 C 1.38296 * 120.04881 * 0.02562 * 19 18 17 21 21 F 1.35093 * 120.05887 * 180.02562 * 20 19 18 22 22 C 1.47076 * 87.88159 * 27.34265 * 11 10 9 23 23 H 0.97003 * 119.99882 * 359.97438 * 1 2 3 24 24 H 1.09003 * 113.28323 * 313.07364 * 9 7 2 25 25 H 1.08999 * 113.47078 * 105.37264 * 10 9 7 26 26 H 1.08999 * 113.52516 * 334.93749 * 10 9 7 27 27 H 0.96996 * 120.00454 * 5.58516 * 14 12 11 28 28 H 1.08000 * 120.02794 * 359.96981 * 16 15 14 29 29 H 1.08005 * 119.94358 * 180.27166 * 17 16 15 30 30 H 1.08003 * 119.92142 * 179.74385 * 18 17 16 31 31 H 1.08005 * 119.97537 * 180.02562 * 19 18 17 32 32 H 1.09005 * 113.46456 * 87.44117 * 22 11 10 33 33 H 1.08993 * 113.46572 * 217.87246 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.1488 -3.7442 -0.0005 11 7 1.2073 -4.3594 -0.9482 12 6 0.8319 -5.6139 -1.2669 13 16 1.5323 -6.9491 -0.4560 14 7 -0.0949 -5.8173 -2.2241 15 6 -0.5662 -7.1111 -2.4785 16 6 -0.8896 -7.9536 -1.4238 17 6 -1.3599 -9.2275 -1.6778 18 6 -1.4983 -9.6688 -2.9809 19 6 -1.1722 -8.8354 -4.0349 20 6 -0.7058 -7.5570 -3.7882 21 9 -0.3876 -6.7424 -4.8179 22 6 0.8605 -3.0032 -1.3996 23 1 -0.4850 0.8401 0.0004 24 1 0.4437 -2.5306 0.7312 25 1 2.1878 -4.2513 0.9635 26 1 3.1376 -3.5676 -0.4239 27 1 -0.4324 -5.0681 -2.7395 28 1 -0.7775 -7.6121 -0.4053 29 1 -1.6157 -9.8814 -0.8572 30 1 -1.8624 -10.6668 -3.1760 31 1 -1.2818 -9.1830 -5.0516 32 1 1.5093 -2.6304 -2.1922 33 1 -0.1981 -2.8791 -1.6275 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195743400.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:41 Heat of formation + Delta-G solvation = 38.359740 kcal Electronic energy + Delta-G solvation = -18759.221868 eV Core-core repulsion = 15633.989011 eV Total energy + Delta-G solvation = -3125.232857 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.074 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.97229 -40.06654 -39.10216 -36.53035 -33.06604 -31.06792 -30.62769 -28.70224 -26.00152 -25.45153 -23.50378 -22.50361 -21.81196 -19.74599 -18.45720 -17.60245 -17.26793 -16.97842 -16.31345 -15.82946 -15.56240 -14.95989 -14.76215 -14.50353 -13.91795 -13.64877 -13.45049 -13.01986 -12.43729 -12.31386 -11.99680 -11.92455 -11.55473 -11.28993 -11.19865 -10.93442 -10.80032 -10.54019 -9.67625 -9.58356 -9.40313 -8.91079 -8.79660 -8.18541 -7.39446 -6.96561 -6.39828 -4.47434 0.92319 1.21123 1.83438 2.18101 2.76600 3.11354 3.21399 3.24483 3.45945 3.59397 4.13599 4.17247 4.68107 4.87391 4.89818 5.14474 5.23491 5.37264 5.62916 5.69835 5.83782 5.90080 6.00626 6.05033 6.11417 6.19505 6.20490 6.34725 6.39844 6.60705 6.95159 6.98903 7.25837 7.57457 7.82775 7.90095 8.58327 9.21625 10.69674 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.031741 B = 0.003944 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.923782 B = 7097.813227 C = 7542.421703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.070 3.930 3 Si 0.900 3.100 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.521 4.521 8 H 0.069 0.931 9 C 0.042 3.958 10 C 0.114 3.886 11 N -0.584 5.584 12 C 0.590 3.410 13 S -0.676 6.676 14 N -0.643 5.643 15 C 0.115 3.885 16 C -0.045 4.045 17 C -0.123 4.123 18 C -0.094 4.094 19 C -0.152 4.152 20 C 0.086 3.914 21 F -0.140 7.140 22 C 0.075 3.925 23 H 0.266 0.734 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.408 0.592 28 H 0.150 0.850 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.136 0.864 32 H 0.090 0.910 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.919 -11.819 -6.490 14.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.134 4.134 3 Si 0.727 3.273 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.559 4.559 8 H 0.087 0.913 9 C 0.023 3.977 10 C -0.007 4.007 11 N -0.288 5.288 12 C 0.232 3.768 13 S -0.544 6.544 14 N -0.270 5.270 15 C 0.020 3.980 16 C -0.067 4.067 17 C -0.143 4.143 18 C -0.113 4.113 19 C -0.172 4.172 20 C 0.063 3.937 21 F -0.118 7.118 22 C -0.049 4.049 23 H 0.076 0.924 24 H 0.093 0.907 25 H 0.099 0.901 26 H 0.109 0.891 27 H 0.246 0.754 28 H 0.168 0.832 29 H 0.150 0.850 30 H 0.149 0.851 31 H 0.154 0.846 32 H 0.108 0.892 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.589 -12.566 -5.979 14.653 hybrid contribution -0.008 2.082 -1.132 2.370 sum -4.597 -10.484 -7.111 13.477 Atomic orbital electron populations 1.69945 1.06188 1.27507 1.48268 1.25052 0.94915 0.99716 0.93742 0.86398 0.80221 0.82790 0.77887 1.19357 1.20788 1.20641 1.20874 0.93221 0.88954 1.52824 0.91296 1.20401 0.94933 0.91303 0.91096 1.23804 0.93992 0.91505 0.91381 1.49545 1.39724 1.02177 1.37335 1.21713 0.82639 0.88545 0.83919 1.93170 1.68374 1.29704 1.63177 1.41917 1.40344 1.08470 1.36314 1.17381 1.02435 0.86013 0.92150 1.21325 0.92212 0.93558 0.99590 1.21044 1.00446 0.95787 0.96978 1.21006 0.98840 0.99417 0.92040 1.20876 1.03494 0.91974 1.00866 1.17568 1.04060 0.89607 0.82431 1.91478 1.90827 1.72192 1.57331 1.24352 1.00890 0.75631 1.04071 0.92379 0.90652 0.90143 0.89146 0.75393 0.83200 0.84951 0.85065 0.84614 0.89152 0.91367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.63 13.26 55.43 0.74 -21.90 16 2 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 19.04 29.54 -169.99 -5.02 14.02 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.52 -12.27 8.83 -34.44 -0.30 -12.58 16 8 H 0.07 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.04 0.90 3.79 -91.12 -0.35 0.56 16 10 C 0.11 2.17 7.91 -8.49 -0.07 2.10 16 11 N -0.58 -10.88 3.69 -187.07 -0.69 -11.57 16 12 C 0.59 11.02 7.88 -86.92 -0.68 10.33 16 13 S -0.68 -14.19 26.59 -107.50 -2.86 -17.04 16 14 N -0.64 -10.26 5.17 -11.34 -0.06 -10.32 16 15 C 0.12 1.73 5.85 -83.60 -0.49 1.24 16 16 C -0.04 -0.63 7.88 -39.40 -0.31 -0.95 16 17 C -0.12 -1.37 10.04 -39.60 -0.40 -1.77 16 18 C -0.09 -0.92 10.04 -39.56 -0.40 -1.32 16 19 C -0.15 -1.66 10.02 -39.55 -0.40 -2.06 16 20 C 0.09 1.17 7.31 -39.26 -0.29 0.88 16 21 F -0.14 -1.99 17.08 2.25 0.04 -1.95 16 22 C 0.08 1.42 7.88 -8.36 -0.07 1.35 16 23 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 24 H 0.08 1.77 8.11 -51.93 -0.42 1.35 16 25 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 26 H 0.09 1.65 8.10 -51.93 -0.42 1.23 16 27 H 0.41 5.86 8.55 -40.82 -0.35 5.51 16 28 H 0.15 2.38 6.49 -52.47 -0.34 2.04 16 29 H 0.13 1.17 8.06 -52.48 -0.42 0.74 16 30 H 0.13 0.87 8.06 -52.48 -0.42 0.44 16 31 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 32 H 0.09 1.67 8.10 -51.93 -0.42 1.25 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 305.46 15.07 4.60 4.60 Total: -1.00 -27.82 305.46 -10.70 -38.52 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -3.61 Total: 6.22 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -3.84 Total: -0.58 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: -0.01 Total: -43.79 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.02 kcal Atomic # 16 Polarization: -14.19 SS G_CDS: -2.86 Total: -17.04 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.82 -10.70 -38.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195743400.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.885 kcal (2) G-P(sol) polarization free energy of solvation -27.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds