Wall clock time and date at job start Tue Mar 31 2020 01:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00064 * 2 1 4 4 H 1.48503 * 109.47386 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47516 * 300.00342 * 3 2 1 6 6 H 1.48501 * 109.46950 * 60.00250 * 3 2 1 7 7 C 1.37878 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99810 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53499 * 114.20374 * 180.02562 * 9 7 2 11 11 N 1.47074 * 87.98353 * 220.14766 * 10 9 7 12 12 C 1.34773 * 136.05846 * 207.08420 * 11 10 9 13 13 S 1.71201 * 120.00050 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99753 * 180.02562 * 12 11 10 15 15 C 1.40027 * 119.99496 * 185.30236 * 14 12 11 16 16 C 1.38809 * 120.07560 * 44.08452 * 15 14 12 17 17 C 1.38153 * 119.94923 * 179.71700 * 16 15 14 18 18 C 1.38275 * 120.11169 * 0.55048 * 17 16 15 19 19 C 1.38269 * 120.15733 * 359.72142 * 18 17 16 20 20 C 1.38296 * 120.04881 * 0.02562 * 19 18 17 21 21 F 1.35093 * 120.05887 * 180.02562 * 20 19 18 22 22 C 1.47076 * 87.88159 * 27.34265 * 11 10 9 23 23 H 0.97003 * 119.99882 * 359.97438 * 1 2 3 24 24 H 1.09003 * 113.28323 * 313.07364 * 9 7 2 25 25 H 1.08999 * 113.47078 * 105.37264 * 10 9 7 26 26 H 1.08999 * 113.52516 * 334.93749 * 10 9 7 27 27 H 0.96996 * 120.00454 * 5.58516 * 14 12 11 28 28 H 1.08000 * 120.02794 * 359.96981 * 16 15 14 29 29 H 1.08005 * 119.94358 * 180.27166 * 17 16 15 30 30 H 1.08003 * 119.92142 * 179.74385 * 18 17 16 31 31 H 1.08005 * 119.97537 * 180.02562 * 19 18 17 32 32 H 1.09005 * 113.46456 * 87.44117 * 22 11 10 33 33 H 1.08993 * 113.46572 * 217.87246 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.1488 -3.7442 -0.0005 11 7 1.2073 -4.3594 -0.9482 12 6 0.8319 -5.6139 -1.2669 13 16 1.5323 -6.9491 -0.4560 14 7 -0.0949 -5.8173 -2.2241 15 6 -0.5662 -7.1111 -2.4785 16 6 -0.8896 -7.9536 -1.4238 17 6 -1.3599 -9.2275 -1.6778 18 6 -1.4983 -9.6688 -2.9809 19 6 -1.1722 -8.8354 -4.0349 20 6 -0.7058 -7.5570 -3.7882 21 9 -0.3876 -6.7424 -4.8179 22 6 0.8605 -3.0032 -1.3996 23 1 -0.4850 0.8401 0.0004 24 1 0.4437 -2.5306 0.7312 25 1 2.1878 -4.2513 0.9635 26 1 3.1376 -3.5676 -0.4239 27 1 -0.4324 -5.0681 -2.7395 28 1 -0.7775 -7.6121 -0.4053 29 1 -1.6157 -9.8814 -0.8572 30 1 -1.8624 -10.6668 -3.1760 31 1 -1.2818 -9.1830 -5.0516 32 1 1.5093 -2.6304 -2.1922 33 1 -0.1981 -2.8791 -1.6275 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195743400.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:40 Heat of formation + Delta-G solvation = 24.833429 kcal Electronic energy + Delta-G solvation = -18759.808413 eV Core-core repulsion = 15633.989011 eV Total energy + Delta-G solvation = -3125.819401 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.074 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.02919 -41.47298 -40.32110 -37.75593 -34.83738 -32.45869 -31.59027 -29.97308 -27.67377 -27.02458 -24.78250 -23.55628 -23.11703 -21.31849 -19.70720 -19.03625 -18.71914 -18.28526 -17.48999 -17.07943 -16.70476 -16.61803 -16.14146 -15.68960 -15.01747 -14.96257 -14.91305 -14.27897 -14.05354 -13.53620 -13.48747 -13.01490 -12.91608 -12.77798 -12.62257 -12.43357 -12.29962 -12.18510 -11.30955 -11.24230 -10.80863 -10.63704 -9.92311 -9.36797 -9.01437 -8.52782 -8.25285 -6.37087 -0.20164 0.24631 0.46810 0.72683 1.33632 1.44096 1.49719 1.58956 2.04503 2.41479 2.64643 3.05290 3.14118 3.76585 3.86541 4.02370 4.09816 4.12624 4.35733 4.37073 4.42602 4.53275 4.56976 4.74132 4.76348 5.01847 5.09224 5.24865 5.42045 5.47135 5.52569 5.64961 5.72008 5.94591 6.07999 6.36591 6.73096 7.34448 8.84565 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.031741 B = 0.003944 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.923782 B = 7097.813227 C = 7542.421703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.026 3.974 3 Si 0.959 3.041 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.527 4.527 8 H 0.072 0.928 9 C 0.033 3.967 10 C 0.125 3.875 11 N -0.586 5.586 12 C 0.600 3.400 13 S -0.723 6.723 14 N -0.629 5.629 15 C 0.082 3.918 16 C -0.063 4.063 17 C -0.119 4.119 18 C -0.077 4.077 19 C -0.146 4.146 20 C 0.071 3.929 21 F -0.147 7.147 22 C 0.092 3.908 23 H 0.266 0.734 24 H 0.048 0.952 25 H 0.078 0.922 26 H 0.102 0.898 27 H 0.415 0.585 28 H 0.126 0.874 29 H 0.157 0.843 30 H 0.175 0.825 31 H 0.166 0.834 32 H 0.099 0.901 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.172 -13.236 -7.940 16.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.176 4.176 3 Si 0.784 3.216 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.091 0.909 9 C 0.013 3.987 10 C 0.003 3.997 11 N -0.290 5.290 12 C 0.239 3.761 13 S -0.592 6.592 14 N -0.256 5.256 15 C -0.012 4.012 16 C -0.085 4.085 17 C -0.139 4.139 18 C -0.095 4.095 19 C -0.165 4.165 20 C 0.050 3.950 21 F -0.126 7.126 22 C -0.033 4.033 23 H 0.075 0.925 24 H 0.066 0.934 25 H 0.096 0.904 26 H 0.120 0.880 27 H 0.254 0.746 28 H 0.144 0.856 29 H 0.175 0.825 30 H 0.192 0.808 31 H 0.183 0.817 32 H 0.117 0.883 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.865 -14.013 -7.460 16.603 hybrid contribution -0.019 2.387 -0.713 2.491 sum -4.884 -11.626 -8.172 15.027 Atomic orbital electron populations 1.70043 1.07433 1.28061 1.49816 1.25734 0.95521 1.02585 0.93721 0.85482 0.79330 0.79268 0.77479 1.18662 1.20706 1.20994 1.21170 0.93557 0.89832 1.51946 0.90949 1.20228 0.94767 0.91707 0.92025 1.23650 0.94097 0.90272 0.91636 1.49371 1.39953 1.02135 1.37538 1.21442 0.82846 0.87592 0.84233 1.93182 1.69953 1.31231 1.64861 1.41911 1.38989 1.09610 1.35089 1.17668 1.04526 0.85753 0.93257 1.21259 0.93893 0.95039 0.98327 1.21397 0.99076 0.94602 0.98811 1.21498 0.96473 1.00790 0.90735 1.21318 1.01732 0.90609 1.02835 1.17835 1.04901 0.90686 0.81626 1.91457 1.91042 1.72652 1.57437 1.24094 1.01184 0.75369 1.02637 0.92486 0.93423 0.90404 0.87999 0.74569 0.85593 0.82539 0.80773 0.81687 0.88256 0.91150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.49 13.26 21.45 0.28 -47.21 16 2 C 0.03 1.24 5.46 84.65 0.46 1.71 16 3 Si 0.96 38.89 29.54 68.60 2.03 40.92 16 4 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 5 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 6 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.53 -24.82 8.83 25.60 0.23 -24.59 16 8 H 0.07 3.30 7.81 -2.91 -0.02 3.27 16 9 C 0.03 1.41 3.79 -11.12 -0.04 1.36 16 10 C 0.12 4.75 7.91 83.18 0.66 5.41 16 11 N -0.59 -21.89 3.69 -745.76 -2.75 -24.64 16 12 C 0.60 22.55 7.88 179.06 1.41 23.96 16 13 S -0.72 -30.74 26.59 -56.49 -1.50 -32.24 16 14 N -0.63 -20.14 5.17 -189.80 -0.98 -21.12 16 15 C 0.08 2.42 5.85 38.17 0.22 2.65 16 16 C -0.06 -1.77 7.88 22.39 0.18 -1.60 16 17 C -0.12 -2.37 10.04 22.26 0.22 -2.15 16 18 C -0.08 -1.18 10.04 22.29 0.22 -0.95 16 19 C -0.15 -2.68 10.02 22.29 0.22 -2.45 16 20 C 0.07 1.83 7.31 22.48 0.16 2.00 16 21 F -0.15 -4.01 17.08 44.97 0.77 -3.25 16 22 C 0.09 3.45 7.88 83.27 0.66 4.10 16 23 H 0.27 13.19 8.31 -92.71 -0.77 12.42 16 24 H 0.05 2.32 8.11 -2.39 -0.02 2.30 16 25 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 26 H 0.10 3.66 8.10 -2.39 -0.02 3.64 16 27 H 0.42 11.89 8.55 -92.71 -0.79 11.10 16 28 H 0.13 4.12 6.49 -2.92 -0.02 4.10 16 29 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 30 H 0.17 1.25 8.06 -2.91 -0.02 1.22 16 31 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 32 H 0.10 3.58 8.10 -2.38 -0.02 3.56 16 33 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -60.44 305.46 2.80 -57.64 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.35 Total: 20.46 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 4.61 Total: 9.44 kcal Atomic # 7 Polarization: -89.53 SS G_CDS: -3.45 Total: -92.97 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.77 Total: -3.25 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 2.03 Total: 40.92 kcal Atomic # 16 Polarization: -30.74 SS G_CDS: -1.50 Total: -32.24 kcal Total: -60.44 2.80 -57.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195743400.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.471 kcal (2) G-P(sol) polarization free energy of solvation -60.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds