Wall clock time and date at job start Tue Mar 31 2020 01:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34760 * 116.99764 * 2 1 4 4 O 1.21500 * 120.00156 * 359.97438 * 3 2 1 5 5 C 1.47436 * 119.99686 * 180.02562 * 3 2 1 6 6 C 1.39827 * 120.07861 * 0.26596 * 5 3 2 7 7 C 1.37619 * 119.92436 * 180.23653 * 6 5 3 8 8 C 1.39182 * 120.07399 * 359.49604 * 7 6 5 9 9 N 1.39293 * 119.92589 * 180.27912 * 8 7 6 10 10 C 1.34779 * 120.00013 * 42.15202 * 9 8 7 11 11 S 1.71207 * 119.99975 * 5.54672 * 10 9 8 12 12 N 1.34774 * 120.00059 * 185.53978 * 10 9 8 13 13 C 1.37039 * 119.99947 * 180.02562 * 12 10 9 14 14 H 1.08005 * 120.00207 * 0.02562 * 13 12 10 15 15 C 1.38881 * 120.00419 * 180.02562 * 13 12 10 16 16 N 1.31475 * 120.00608 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99568 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47137 * 90.00320 * 17 15 13 19 19 H 1.48502 * 109.47248 * 209.99546 * 17 15 13 20 20 H 1.48496 * 109.47387 * 330.00213 * 17 15 13 21 21 C 1.39185 * 120.15443 * 0.25205 * 8 7 6 22 22 C 1.37618 * 120.07685 * 0.02562 * 21 8 7 23 23 H 1.08996 * 109.47163 * 60.00555 * 1 2 3 24 24 H 1.08997 * 109.46841 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47127 * 300.00334 * 1 2 3 26 26 H 1.08008 * 120.04024 * 359.97438 * 6 5 3 27 27 H 1.08001 * 119.96465 * 179.77407 * 7 6 5 28 28 H 0.96998 * 120.00200 * 222.15838 * 9 8 7 29 29 H 0.96990 * 120.00080 * 0.02562 * 12 10 9 30 30 H 0.96997 * 120.00019 * 179.97438 * 16 15 13 31 31 H 1.08009 * 119.96247 * 180.02562 * 21 8 7 32 32 H 1.08004 * 120.03960 * 180.02562 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4020 2.2197 -0.0005 5 6 3.5361 1.2779 -0.0006 6 6 4.2993 0.1062 -0.0067 7 6 5.6734 0.1819 -0.0023 8 6 6.3035 1.4229 -0.0023 9 7 7.6946 1.4959 -0.0038 10 6 8.4121 0.6675 -0.7882 11 16 7.6145 -0.3756 -1.8869 12 7 9.7574 0.6603 -0.7080 13 6 10.4869 -0.1817 -1.5060 14 1 9.9838 -0.8392 -2.1996 15 6 11.8732 -0.1896 -1.4230 16 7 12.5732 -0.9977 -2.1882 17 14 12.7434 0.9471 -0.2228 18 1 12.9093 0.2566 1.0814 19 1 14.0778 1.3103 -0.7638 20 1 11.9349 2.1780 -0.0319 21 6 5.5470 2.5912 -0.0015 22 6 4.1726 2.5229 -0.0002 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 3.8109 -0.8571 -0.0107 27 1 6.2634 -0.7226 -0.0034 28 1 8.1469 2.1429 0.5599 29 1 10.2092 1.2510 -0.0854 30 1 13.5414 -1.0028 -2.1304 31 1 6.0393 3.5526 -0.0020 32 1 3.5861 3.4298 0.0001 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196772557.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:31 Heat of formation + Delta-G solvation = -34.728550 kcal Electronic energy + Delta-G solvation = -18418.478904 eV Core-core repulsion = 15277.703912 eV Total energy + Delta-G solvation = -3140.774992 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.43029 -39.36898 -37.63468 -36.33321 -34.99419 -32.69690 -30.86364 -29.93565 -27.64479 -25.88143 -23.47566 -23.08107 -21.95576 -20.75320 -19.33471 -18.07085 -17.87077 -16.90968 -16.58657 -16.27346 -15.57837 -14.81720 -14.66868 -14.26869 -13.76091 -13.58706 -13.46799 -13.37769 -13.09862 -12.87783 -12.37846 -12.27766 -12.04059 -11.59831 -11.21197 -10.96011 -10.80538 -10.62805 -10.43955 -10.29695 -10.05028 -9.28426 -8.76365 -8.17168 -7.11919 -6.77756 -5.95235 -4.45773 0.86065 1.73563 2.18484 2.58840 2.67630 2.72643 2.78083 2.83771 3.10226 3.47880 3.69439 4.10912 4.42408 4.57921 4.90252 5.03091 5.09136 5.10552 5.22064 5.42315 5.57916 5.70194 5.84392 6.18561 6.31646 6.48130 6.54701 6.61503 6.75049 6.92811 7.12651 7.40323 7.81878 7.84591 8.02661 8.46338 8.67323 9.97421 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.043155 B = 0.003598 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.661531 B = 7779.368972 C = 8228.751093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.515 3.485 4 O -0.521 6.521 5 C -0.157 4.157 6 C -0.053 4.053 7 C -0.093 4.093 8 C 0.219 3.781 9 N -0.662 5.662 10 C 0.418 3.582 11 S -0.711 6.711 12 N -0.476 5.476 13 C -0.283 4.283 14 H 0.166 0.834 15 C 0.058 3.942 16 N -0.811 5.811 17 Si 0.879 3.121 18 H -0.259 1.259 19 H -0.262 1.262 20 H -0.266 1.266 21 C -0.164 4.164 22 C -0.044 4.044 23 H 0.061 0.939 24 H 0.100 0.900 25 H 0.060 0.940 26 H 0.135 0.865 27 H 0.154 0.846 28 H 0.393 0.607 29 H 0.372 0.628 30 H 0.291 0.709 31 H 0.127 0.873 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.861 5.516 8.887 15.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.362 3.638 4 O -0.411 6.411 5 C -0.160 4.160 6 C -0.074 4.074 7 C -0.117 4.117 8 C 0.120 3.880 9 N -0.292 5.292 10 C 0.061 3.939 11 S -0.579 6.579 12 N -0.078 5.078 13 C -0.418 4.418 14 H 0.183 0.817 15 C -0.156 4.156 16 N -0.442 5.442 17 Si 0.703 3.297 18 H -0.183 1.183 19 H -0.186 1.186 20 H -0.191 1.191 21 C -0.186 4.186 22 C -0.064 4.064 23 H 0.080 0.920 24 H 0.118 0.882 25 H 0.079 0.921 26 H 0.153 0.847 27 H 0.172 0.828 28 H 0.229 0.771 29 H 0.208 0.792 30 H 0.102 0.898 31 H 0.145 0.855 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.129 4.839 7.907 14.485 hybrid contribution 1.401 1.801 1.481 2.720 sum -9.729 6.640 9.388 15.063 Atomic orbital electron populations 1.23226 0.76567 1.03516 1.02357 1.86591 1.23079 1.32966 1.84464 1.21289 0.89358 0.81093 0.72048 1.90793 1.67060 1.36086 1.47165 1.18911 0.88239 0.95189 1.13614 1.21170 0.93191 0.97443 0.95617 1.21515 0.94129 0.98448 0.97569 1.17581 0.81402 0.93942 0.95034 1.41492 1.04340 1.38409 1.44926 1.20861 0.83464 0.95291 0.94282 1.92583 1.69469 1.50106 1.45696 1.41377 1.03494 1.31544 1.31412 1.20542 0.89128 1.15095 1.17077 0.81747 1.25356 0.96186 0.96983 0.97116 1.69621 1.08575 1.32355 1.33600 0.86660 0.81121 0.80295 0.81644 1.18347 1.18605 1.19138 1.20731 0.93358 0.97109 1.07417 1.20765 0.93484 0.96340 0.95816 0.91999 0.88172 0.92090 0.84743 0.82808 0.77083 0.79163 0.89807 0.85534 0.84993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.57 101.05 1.07 1.42 16 2 O -0.35 -4.65 9.81 -40.65 -0.40 -5.05 16 3 C 0.52 7.70 7.89 34.48 0.27 7.97 16 4 O -0.52 -8.60 16.13 -19.27 -0.31 -8.91 16 5 C -0.16 -2.37 5.88 -104.96 -0.62 -2.98 16 6 C -0.05 -0.82 9.60 -39.21 -0.38 -1.19 16 7 C -0.09 -1.60 7.82 -39.46 -0.31 -1.91 16 8 C 0.22 3.59 5.90 -83.77 -0.49 3.10 16 9 N -0.66 -11.00 5.30 -11.40 -0.06 -11.06 16 10 C 0.42 8.84 7.70 -86.92 -0.67 8.18 16 11 S -0.71 -18.00 24.45 -107.50 -2.63 -20.63 16 12 N -0.48 -9.92 5.09 -12.53 -0.06 -9.98 16 13 C -0.28 -6.91 9.99 -14.99 -0.15 -7.06 16 14 H 0.17 4.70 6.45 -52.48 -0.34 4.36 16 15 C 0.06 1.34 5.50 -17.47 -0.10 1.24 16 16 N -0.81 -20.06 13.96 55.49 0.77 -19.29 16 17 Si 0.88 15.89 27.74 -169.99 -4.71 11.17 16 18 H -0.26 -4.61 7.11 56.52 0.40 -4.20 16 19 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 20 H -0.27 -4.37 6.52 56.52 0.37 -4.01 16 21 C -0.16 -2.31 9.95 -39.46 -0.39 -2.71 16 22 C -0.04 -0.63 9.58 -39.22 -0.38 -1.00 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.13 1.85 7.60 -52.48 -0.40 1.46 16 27 H 0.15 2.98 6.28 -50.10 -0.31 2.67 16 28 H 0.39 5.05 8.84 -40.82 -0.36 4.68 16 29 H 0.37 6.55 5.78 -40.82 -0.24 6.31 16 30 H 0.29 6.46 8.31 -40.82 -0.34 6.12 16 31 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 32 H 0.13 1.70 7.64 -52.48 -0.40 1.30 16 LS Contribution 296.94 15.07 4.47 4.47 Total: -1.00 -30.38 296.94 -7.97 -38.35 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -2.91 Total: 15.87 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: -2.14 Total: 5.05 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.65 Total: -40.33 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.71 Total: -13.95 kcal Atomic # 14 Polarization: 15.89 SS G_CDS: -4.71 Total: 11.17 kcal Atomic # 16 Polarization: -18.00 SS G_CDS: -2.63 Total: -20.63 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.38 -7.97 -38.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196772557.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.624 kcal (2) G-P(sol) polarization free energy of solvation -30.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds