Wall clock time and date at job start Tue Mar 31 2020 01:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34760 * 116.99764 * 2 1 4 4 O 1.21500 * 120.00156 * 359.97438 * 3 2 1 5 5 C 1.47436 * 119.99686 * 180.02562 * 3 2 1 6 6 C 1.39827 * 120.07861 * 0.26596 * 5 3 2 7 7 C 1.37619 * 119.92436 * 180.23653 * 6 5 3 8 8 C 1.39182 * 120.07399 * 359.49604 * 7 6 5 9 9 N 1.39293 * 119.92589 * 180.27912 * 8 7 6 10 10 C 1.34779 * 120.00013 * 42.15202 * 9 8 7 11 11 S 1.71207 * 119.99975 * 5.54672 * 10 9 8 12 12 N 1.34774 * 120.00059 * 185.53978 * 10 9 8 13 13 C 1.37039 * 119.99947 * 180.02562 * 12 10 9 14 14 H 1.08005 * 120.00207 * 0.02562 * 13 12 10 15 15 C 1.38881 * 120.00419 * 180.02562 * 13 12 10 16 16 N 1.31475 * 120.00608 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99568 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47137 * 90.00320 * 17 15 13 19 19 H 1.48502 * 109.47248 * 209.99546 * 17 15 13 20 20 H 1.48496 * 109.47387 * 330.00213 * 17 15 13 21 21 C 1.39185 * 120.15443 * 0.25205 * 8 7 6 22 22 C 1.37618 * 120.07685 * 0.02562 * 21 8 7 23 23 H 1.08996 * 109.47163 * 60.00555 * 1 2 3 24 24 H 1.08997 * 109.46841 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47127 * 300.00334 * 1 2 3 26 26 H 1.08008 * 120.04024 * 359.97438 * 6 5 3 27 27 H 1.08001 * 119.96465 * 179.77407 * 7 6 5 28 28 H 0.96998 * 120.00200 * 222.15838 * 9 8 7 29 29 H 0.96990 * 120.00080 * 0.02562 * 12 10 9 30 30 H 0.96997 * 120.00019 * 179.97438 * 16 15 13 31 31 H 1.08009 * 119.96247 * 180.02562 * 21 8 7 32 32 H 1.08004 * 120.03960 * 180.02562 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4020 2.2197 -0.0005 5 6 3.5361 1.2779 -0.0006 6 6 4.2993 0.1062 -0.0067 7 6 5.6734 0.1819 -0.0023 8 6 6.3035 1.4229 -0.0023 9 7 7.6946 1.4959 -0.0038 10 6 8.4121 0.6675 -0.7882 11 16 7.6145 -0.3756 -1.8869 12 7 9.7574 0.6603 -0.7080 13 6 10.4869 -0.1817 -1.5060 14 1 9.9838 -0.8392 -2.1996 15 6 11.8732 -0.1896 -1.4230 16 7 12.5732 -0.9977 -2.1882 17 14 12.7434 0.9471 -0.2228 18 1 12.9093 0.2566 1.0814 19 1 14.0778 1.3103 -0.7638 20 1 11.9349 2.1780 -0.0319 21 6 5.5470 2.5912 -0.0015 22 6 4.1726 2.5229 -0.0002 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 3.8109 -0.8571 -0.0107 27 1 6.2634 -0.7226 -0.0034 28 1 8.1469 2.1429 0.5599 29 1 10.2092 1.2510 -0.0854 30 1 13.5414 -1.0028 -2.1304 31 1 6.0393 3.5526 -0.0020 32 1 3.5861 3.4298 0.0001 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196772557.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:31 Heat of formation + Delta-G solvation = -53.467419 kcal Electronic energy + Delta-G solvation = -18419.291483 eV Core-core repulsion = 15277.703912 eV Total energy + Delta-G solvation = -3141.587570 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.59664 -40.73664 -39.14478 -37.46933 -36.48401 -34.39897 -32.07892 -31.23810 -28.62714 -27.45901 -24.95757 -24.44614 -23.35278 -22.00592 -20.95332 -19.58598 -19.03188 -18.20923 -17.93352 -17.31857 -17.17584 -16.38559 -16.04404 -15.49297 -15.26597 -14.97674 -14.80642 -14.45874 -14.42014 -14.34134 -13.63199 -13.47116 -13.01927 -12.92885 -12.79511 -12.24556 -12.18292 -11.92110 -11.77118 -11.71573 -11.60253 -10.89107 -9.99575 -9.59137 -8.85471 -8.66154 -7.87823 -6.33473 -0.41248 0.53270 0.58439 1.17776 1.27425 1.32508 1.42070 1.59686 1.77685 1.96583 2.04452 2.79412 2.89964 2.91253 3.80334 3.94831 4.04940 4.33853 4.37311 4.37666 4.46245 4.61024 4.73052 4.94567 5.10676 5.17163 5.29491 5.36913 5.39104 5.50477 5.63413 5.97734 6.23192 6.41098 6.68160 6.71628 6.91682 8.30658 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.043155 B = 0.003598 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.661531 B = 7779.368972 C = 8228.751093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.517 3.483 4 O -0.538 6.538 5 C -0.159 4.159 6 C -0.052 4.052 7 C -0.108 4.108 8 C 0.194 3.806 9 N -0.640 5.640 10 C 0.453 3.547 11 S -0.793 6.793 12 N -0.467 5.467 13 C -0.315 4.315 14 H 0.110 0.890 15 C 0.016 3.984 16 N -0.866 5.866 17 Si 0.956 3.044 18 H -0.249 1.249 19 H -0.261 1.261 20 H -0.232 1.232 21 C -0.144 4.144 22 C -0.042 4.042 23 H 0.062 0.938 24 H 0.131 0.869 25 H 0.066 0.934 26 H 0.143 0.857 27 H 0.126 0.874 28 H 0.419 0.581 29 H 0.395 0.605 30 H 0.298 0.702 31 H 0.161 0.839 32 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.488 8.346 11.121 18.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.277 6.277 3 C 0.365 3.635 4 O -0.430 6.430 5 C -0.161 4.161 6 C -0.072 4.072 7 C -0.131 4.131 8 C 0.097 3.903 9 N -0.271 5.271 10 C 0.092 3.908 11 S -0.663 6.663 12 N -0.071 5.071 13 C -0.450 4.450 14 H 0.128 0.872 15 C -0.194 4.194 16 N -0.497 5.497 17 Si 0.773 3.227 18 H -0.173 1.173 19 H -0.185 1.185 20 H -0.155 1.155 21 C -0.166 4.166 22 C -0.062 4.062 23 H 0.081 0.919 24 H 0.149 0.851 25 H 0.085 0.915 26 H 0.161 0.839 27 H 0.144 0.856 28 H 0.259 0.741 29 H 0.234 0.766 30 H 0.108 0.892 31 H 0.179 0.821 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -11.801 7.699 10.188 17.388 hybrid contribution 1.288 0.892 0.803 1.761 sum -10.512 8.591 10.991 17.468 Atomic orbital electron populations 1.23582 0.74343 1.05786 1.02704 1.86579 1.25284 1.31967 1.83871 1.21234 0.89257 0.81382 0.71653 1.90783 1.67382 1.36699 1.48104 1.19115 0.88686 0.95460 1.12851 1.21212 0.92534 0.98306 0.95182 1.21334 0.94782 0.98038 0.98960 1.17803 0.81196 0.94586 0.96726 1.41247 1.04474 1.37565 1.43858 1.20436 0.83612 0.93880 0.92920 1.92806 1.70866 1.53493 1.49161 1.41000 1.02999 1.31606 1.31527 1.19988 0.90127 1.16606 1.18276 0.87245 1.26263 0.96127 0.98313 0.98730 1.69738 1.09340 1.34653 1.36003 0.85507 0.79757 0.78814 0.78583 1.17276 1.18485 1.15548 1.20998 0.93130 0.97471 1.04957 1.21055 0.93727 0.96662 0.94732 0.91933 0.85055 0.91482 0.83889 0.85641 0.74096 0.76608 0.89164 0.82112 0.83080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.57 113.37 1.20 1.67 16 2 O -0.36 -8.87 9.81 -56.70 -0.56 -9.43 16 3 C 0.52 14.57 7.89 70.25 0.55 15.12 16 4 O -0.54 -16.70 16.13 19.83 0.32 -16.38 16 5 C -0.16 -4.50 5.88 -20.09 -0.12 -4.62 16 6 C -0.05 -1.56 9.60 22.51 0.22 -1.35 16 7 C -0.11 -3.71 7.82 22.35 0.17 -3.54 16 8 C 0.19 6.00 5.90 38.41 0.23 6.23 16 9 N -0.64 -19.76 5.30 -189.98 -1.01 -20.77 16 10 C 0.45 18.94 7.70 179.05 1.38 20.32 16 11 S -0.79 -41.74 24.45 -56.49 -1.38 -43.12 16 12 N -0.47 -19.05 5.09 -193.57 -0.99 -20.04 16 13 C -0.32 -15.88 9.99 84.03 0.84 -15.04 16 14 H 0.11 6.72 6.45 -2.91 -0.02 6.70 16 15 C 0.02 0.72 5.50 84.90 0.47 1.19 16 16 N -0.87 -44.43 13.96 21.65 0.30 -44.12 16 17 Si 0.96 31.12 27.74 68.60 1.90 33.03 16 18 H -0.25 -7.73 7.11 99.48 0.71 -7.02 16 19 H -0.26 -8.46 7.11 99.48 0.71 -7.75 16 20 H -0.23 -6.21 6.52 99.48 0.65 -5.56 16 21 C -0.14 -3.56 9.95 22.35 0.22 -3.34 16 22 C -0.04 -1.07 9.58 22.51 0.22 -0.86 16 23 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.14 3.93 7.60 -2.91 -0.02 3.91 16 27 H 0.13 5.06 6.28 -4.43 -0.03 5.04 16 28 H 0.42 9.02 8.84 -92.71 -0.82 8.20 16 29 H 0.39 12.65 5.78 -92.72 -0.54 12.11 16 30 H 0.30 13.61 8.31 -92.71 -0.77 12.84 16 31 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 32 H 0.15 3.31 7.64 -2.91 -0.02 3.29 16 Total: -1.00 -70.80 296.94 3.73 -67.06 By element: Atomic # 1 Polarization: 38.21 SS G_CDS: -0.24 Total: 37.97 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: 5.37 Total: 15.80 kcal Atomic # 7 Polarization: -83.24 SS G_CDS: -1.69 Total: -84.93 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.24 Total: -25.81 kcal Atomic # 14 Polarization: 31.12 SS G_CDS: 1.90 Total: 33.03 kcal Atomic # 16 Polarization: -41.74 SS G_CDS: -1.38 Total: -43.12 kcal Total: -70.80 3.73 -67.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196772557.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.597 kcal (2) G-P(sol) polarization free energy of solvation -70.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds