Wall clock time and date at job start Tue Mar 31 2020 01:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00417 * 2 1 4 4 H 1.48497 * 109.47467 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47428 * 300.00442 * 3 2 1 6 6 H 1.48501 * 109.46906 * 60.00309 * 3 2 1 7 7 C 1.37884 * 119.99695 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99872 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00131 * 359.97438 * 7 2 1 10 10 C 1.53494 * 114.20620 * 179.97438 * 9 7 2 11 11 N 1.47065 * 87.98637 * 220.14954 * 10 9 7 12 12 C 1.34779 * 136.05685 * 207.08231 * 11 10 9 13 13 S 1.71198 * 119.99971 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99881 * 180.02562 * 12 11 10 15 15 C 1.40006 * 119.99986 * 185.54142 * 14 12 11 16 16 C 1.38852 * 120.04980 * 41.89073 * 15 14 12 17 17 C 1.38107 * 119.95890 * 179.97438 * 16 15 14 18 18 C 1.38477 * 120.04666 * 0.02808 * 17 16 15 19 19 F 1.35095 * 119.95768 * 179.97438 * 18 17 16 20 20 C 1.38468 * 120.08848 * 0.22549 * 18 17 16 21 21 C 1.38117 * 120.04703 * 359.49329 * 20 18 17 22 22 C 1.47067 * 87.88476 * 27.34463 * 11 10 9 23 23 H 0.96995 * 119.99566 * 359.97438 * 1 2 3 24 24 H 1.08996 * 113.28403 * 313.07513 * 9 7 2 25 25 H 1.09004 * 113.46420 * 105.36975 * 10 9 7 26 26 H 1.09004 * 113.52305 * 334.94254 * 10 9 7 27 27 H 0.97000 * 119.99916 * 5.54224 * 14 12 11 28 28 H 1.08006 * 120.01843 * 359.95994 * 16 15 14 29 29 H 1.08005 * 119.98111 * 179.97438 * 17 16 15 30 30 H 1.08001 * 119.97675 * 179.72222 * 20 18 17 31 31 H 1.08001 * 120.02531 * 180.24756 * 21 20 18 32 32 H 1.09004 * 113.46473 * 87.43645 * 22 11 10 33 33 H 1.08998 * 113.46832 * 217.87765 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.1487 -3.7443 -0.0018 11 7 1.2065 -4.3589 -0.9490 12 6 0.8308 -5.6134 -1.2680 13 16 1.5319 -6.9489 -0.4582 14 7 -0.0967 -5.8164 -2.2246 15 6 -0.5718 -7.1092 -2.4758 16 6 -0.8543 -7.9639 -1.4186 17 6 -1.3234 -9.2385 -1.6685 18 6 -1.5116 -9.6648 -2.9726 19 9 -1.9700 -10.9122 -3.2150 20 6 -1.2255 -8.8159 -4.0285 21 6 -0.7617 -7.5384 -3.7827 22 6 0.8594 -3.0027 -1.3996 23 1 -0.4849 0.8400 0.0004 24 1 0.4437 -2.5306 0.7311 25 1 2.1883 -4.2517 0.9621 26 1 3.1372 -3.5674 -0.4258 27 1 -0.4350 -5.0669 -2.7389 28 1 -0.7071 -7.6320 -0.4013 29 1 -1.5429 -9.9038 -0.8464 30 1 -1.3686 -9.1518 -5.0449 31 1 -0.5424 -6.8753 -4.6065 32 1 1.5077 -2.6295 -2.1924 33 1 -0.1994 -2.8784 -1.6266 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196908893.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:43 Heat of formation + Delta-G solvation = 37.862795 kcal Electronic energy + Delta-G solvation = -18465.174276 eV Core-core repulsion = 15339.919871 eV Total energy + Delta-G solvation = -3125.254406 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.074 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.89560 -40.18406 -39.16356 -36.32110 -33.06077 -31.26536 -30.83630 -28.42769 -26.00857 -25.44526 -23.61250 -22.58782 -21.76004 -19.75038 -18.31841 -17.68689 -17.47648 -17.00392 -16.24659 -15.77910 -15.57442 -14.99319 -14.61428 -14.28608 -13.77000 -13.65731 -13.54430 -13.02111 -12.79207 -12.44374 -12.29463 -11.95503 -11.45884 -11.22088 -11.12054 -10.95366 -10.80464 -10.56185 -9.65428 -9.53941 -9.35836 -9.19870 -8.82709 -8.10256 -7.42103 -6.94792 -6.42244 -4.49835 0.90390 1.24284 1.81495 2.14962 2.76170 3.09354 3.19664 3.22608 3.43985 3.58874 4.15079 4.24826 4.68838 4.79884 4.85148 5.16367 5.20699 5.35559 5.61230 5.66969 5.80181 5.88210 5.95465 6.04463 6.09116 6.16490 6.21935 6.27056 6.33595 6.60688 6.97031 6.99485 7.23622 7.55152 7.80487 7.87692 8.56012 9.19301 10.67213 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.041686 B = 0.003427 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.526450 B = 8168.626228 C = 8520.600111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.070 3.930 3 Si 0.900 3.100 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.521 4.521 8 H 0.069 0.931 9 C 0.042 3.958 10 C 0.114 3.886 11 N -0.584 5.584 12 C 0.588 3.412 13 S -0.676 6.676 14 N -0.643 5.643 15 C 0.136 3.864 16 C -0.044 4.044 17 C -0.145 4.145 18 C 0.092 3.908 19 F -0.143 7.143 20 C -0.150 4.150 21 C -0.103 4.103 22 C 0.075 3.925 23 H 0.267 0.733 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.407 0.593 28 H 0.154 0.846 29 H 0.138 0.862 30 H 0.136 0.864 31 H 0.132 0.868 32 H 0.090 0.910 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.133 -9.676 -7.273 12.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.134 4.134 3 Si 0.727 3.273 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.559 4.559 8 H 0.087 0.913 9 C 0.023 3.977 10 C -0.007 4.007 11 N -0.288 5.288 12 C 0.229 3.771 13 S -0.544 6.544 14 N -0.270 5.270 15 C 0.042 3.958 16 C -0.067 4.067 17 C -0.166 4.166 18 C 0.072 3.928 19 F -0.122 7.122 20 C -0.170 4.170 21 C -0.124 4.124 22 C -0.050 4.050 23 H 0.076 0.924 24 H 0.093 0.907 25 H 0.098 0.902 26 H 0.108 0.892 27 H 0.245 0.755 28 H 0.171 0.829 29 H 0.156 0.844 30 H 0.154 0.846 31 H 0.150 0.850 32 H 0.108 0.892 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.827 -10.505 -6.728 13.049 hybrid contribution -0.146 1.694 -0.955 1.950 sum -3.973 -8.811 -7.683 12.347 Atomic orbital electron populations 1.69941 1.06180 1.27521 1.48249 1.25054 0.94921 0.99721 0.93750 0.86400 0.80221 0.82788 0.77899 1.19361 1.20791 1.20641 1.20874 0.93215 0.88955 1.52833 0.91312 1.20395 0.94931 0.91294 0.91117 1.23801 0.93985 0.91533 0.91425 1.49549 1.39719 1.02168 1.37346 1.21727 0.82840 0.88478 0.84022 1.93226 1.68359 1.29524 1.63242 1.42058 1.40024 1.08772 1.36193 1.17411 0.99917 0.84913 0.93582 1.21326 0.92029 0.92658 1.00651 1.20949 1.03056 0.97347 0.95247 1.17721 1.00602 0.80336 0.94156 1.91476 1.86558 1.38920 1.95260 1.20762 1.03849 0.93611 0.98736 1.20692 1.01049 0.95773 0.94885 1.24347 1.00856 0.75658 1.04090 0.92371 0.90668 0.90166 0.89152 0.75477 0.82858 0.84436 0.84596 0.84985 0.89170 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.22 13.26 55.43 0.74 -21.49 16 2 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 18.72 29.54 -169.99 -5.02 13.70 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.52 -12.00 8.83 -34.44 -0.30 -12.31 16 8 H 0.07 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.04 0.88 3.79 -91.12 -0.35 0.53 16 10 C 0.11 2.09 7.91 -8.51 -0.07 2.02 16 11 N -0.58 -10.30 3.69 -187.10 -0.69 -10.99 16 12 C 0.59 10.33 7.88 -86.92 -0.68 9.64 16 13 S -0.68 -13.81 26.41 -107.50 -2.84 -16.65 16 14 N -0.64 -9.13 5.33 -11.39 -0.06 -9.19 16 15 C 0.14 1.85 5.91 -83.67 -0.49 1.36 16 16 C -0.04 -0.63 7.86 -39.40 -0.31 -0.94 16 17 C -0.15 -1.83 10.02 -39.54 -0.40 -2.23 16 18 C 0.09 1.12 7.30 -39.41 -0.29 0.83 16 19 F -0.14 -1.77 17.26 2.25 0.04 -1.73 16 20 C -0.15 -1.62 10.02 -39.54 -0.40 -2.02 16 21 C -0.10 -1.15 9.97 -39.40 -0.39 -1.55 16 22 C 0.08 1.34 7.88 -8.37 -0.07 1.27 16 23 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 24 H 0.08 1.73 8.11 -51.93 -0.42 1.31 16 25 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 26 H 0.09 1.59 8.10 -51.93 -0.42 1.17 16 27 H 0.41 4.84 8.55 -40.82 -0.35 4.49 16 28 H 0.15 2.45 6.27 -49.92 -0.31 2.14 16 29 H 0.14 1.50 8.06 -52.48 -0.42 1.08 16 30 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.09 1.56 8.10 -51.93 -0.42 1.14 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 305.34 15.07 4.60 4.60 Total: -1.00 -27.15 305.34 -10.66 -37.81 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -3.58 Total: 5.75 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -3.84 Total: -1.81 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: -0.02 Total: -41.67 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.70 kcal Atomic # 16 Polarization: -13.81 SS G_CDS: -2.84 Total: -16.65 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.15 -10.66 -37.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196908893.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.676 kcal (2) G-P(sol) polarization free energy of solvation -27.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds