Wall clock time and date at job start Tue Mar 31 2020 01:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86807 * 119.99688 * 2 1 4 4 H 1.48495 * 109.47262 * 269.99741 * 3 2 1 5 5 H 1.48499 * 109.46953 * 30.00179 * 3 2 1 6 6 H 1.48502 * 109.47155 * 149.99712 * 3 2 1 7 7 C 1.37877 * 120.00508 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00144 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99620 * 359.97438 * 7 2 1 10 10 C 1.53941 * 113.74334 * 81.26478 * 9 7 2 11 11 N 1.47814 * 86.03891 * 90.87933 * 10 9 7 12 12 C 1.34776 * 134.45394 * 204.64728 * 11 10 9 13 13 S 1.71204 * 119.99859 * 179.86670 * 12 11 10 14 14 N 1.34776 * 120.00542 * 359.86796 * 12 11 10 15 15 C 1.39881 * 120.00305 * 175.76467 * 14 12 11 16 16 C 1.38925 * 120.05582 * 45.49014 * 15 14 12 17 17 C 1.38096 * 119.97465 * 179.97438 * 16 15 14 18 18 C 1.38267 * 120.09982 * 359.97438 * 17 16 15 19 19 C 1.38492 * 120.11460 * 0.02562 * 18 17 16 20 20 F 1.35104 * 119.98900 * 180.02562 * 19 18 17 21 21 C 1.38352 * 120.02052 * 359.75531 * 19 18 17 22 22 C 1.47579 * 91.05053 * 24.55179 * 11 10 9 23 23 H 0.96999 * 120.00306 * 0.02562 * 1 2 3 24 24 H 1.09001 * 112.94564 * 309.66935 * 9 7 2 25 25 H 1.08999 * 113.77137 * 205.15026 * 10 9 7 26 26 H 1.09000 * 113.76686 * 336.54297 * 10 9 7 27 27 H 0.97004 * 119.99548 * 355.76173 * 14 12 11 28 28 H 1.07999 * 120.01246 * 359.97438 * 16 15 14 29 29 H 1.08004 * 119.94837 * 179.97438 * 17 16 15 30 30 H 1.08003 * 119.93929 * 179.97438 * 18 17 16 31 31 H 1.08003 * 120.04460 * 180.24926 * 21 19 18 32 32 H 1.08995 * 113.76870 * 221.15428 * 22 11 10 33 33 H 1.08999 * 113.76676 * 89.75245 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 0.7553 -2.9286 -1.3932 11 7 2.0411 -3.6473 -1.5164 12 6 2.8001 -4.0530 -2.5536 13 16 4.2714 -4.8797 -2.2659 14 7 2.4009 -3.8078 -3.8174 15 6 3.2296 -4.1493 -4.8913 16 6 3.8535 -5.3902 -4.9216 17 6 4.6708 -5.7257 -5.9830 18 6 4.8689 -4.8286 -7.0163 19 6 4.2489 -3.5905 -6.9900 20 9 4.4439 -2.7161 -8.0013 21 6 3.4255 -3.2510 -5.9313 22 6 2.1610 -3.7401 -0.0484 23 1 -0.4850 0.8400 -0.0004 24 1 0.4840 -2.5469 0.7724 25 1 -0.1143 -3.5851 -1.3668 26 1 0.6442 -2.1014 -2.0943 27 1 1.5389 -3.3946 -3.9821 28 1 3.6993 -6.0921 -4.1155 29 1 5.1559 -6.6904 -6.0059 30 1 5.5090 -5.0936 -7.8449 31 1 2.9386 -2.2872 -5.9125 32 1 3.1700 -3.5595 0.3222 33 1 1.7052 -4.6356 0.3739 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197607099.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:57 Heat of formation + Delta-G solvation = 22.008499 kcal Electronic energy + Delta-G solvation = -18830.504503 eV Core-core repulsion = 15704.562604 eV Total energy + Delta-G solvation = -3125.941900 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.074 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.89390 -41.38909 -40.30608 -37.50885 -34.75533 -32.44266 -31.54097 -29.90415 -27.65697 -27.14140 -24.63467 -23.89972 -22.89959 -21.15363 -19.69815 -19.03038 -18.44113 -17.67240 -17.33098 -17.28636 -16.63659 -16.56421 -16.50535 -16.17519 -15.00650 -14.88927 -14.68676 -14.33096 -13.89756 -13.74128 -13.19565 -13.03629 -12.92311 -12.82564 -12.63102 -12.31914 -12.22984 -12.16700 -11.51166 -11.28545 -10.72844 -10.56454 -9.91713 -9.46125 -8.90223 -8.34946 -8.28877 -6.37102 -0.11235 0.23596 0.52429 0.80940 1.34631 1.40456 1.43456 1.48061 2.13232 2.34747 2.63090 3.02175 3.31210 3.79328 3.93312 4.03248 4.12638 4.17839 4.20716 4.41673 4.46813 4.48701 4.62717 4.76273 4.96145 4.97527 5.13080 5.23669 5.39188 5.42707 5.55320 5.68315 5.78741 5.95966 6.15603 6.45714 6.69474 7.32689 8.79674 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.018807 B = 0.004979 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.473444 B = 5621.753415 C = 6503.935022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.035 3.965 3 Si 0.940 3.060 4 H -0.282 1.282 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.043 0.957 9 C 0.027 3.973 10 C 0.093 3.907 11 N -0.565 5.565 12 C 0.594 3.406 13 S -0.733 6.733 14 N -0.629 5.629 15 C 0.146 3.854 16 C -0.088 4.088 17 C -0.083 4.083 18 C -0.141 4.141 19 C 0.086 3.914 20 F -0.144 7.144 21 C -0.168 4.168 22 C 0.123 3.877 23 H 0.267 0.733 24 H 0.063 0.937 25 H 0.111 0.889 26 H 0.072 0.928 27 H 0.419 0.581 28 H 0.140 0.860 29 H 0.164 0.836 30 H 0.164 0.836 31 H 0.140 0.860 32 H 0.072 0.928 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.615 -8.545 -11.393 14.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.166 4.166 3 Si 0.767 3.233 4 H -0.208 1.208 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.061 0.939 9 C 0.008 3.992 10 C -0.031 4.031 11 N -0.268 5.268 12 C 0.233 3.767 13 S -0.602 6.602 14 N -0.257 5.257 15 C 0.053 3.947 16 C -0.111 4.111 17 C -0.103 4.103 18 C -0.161 4.161 19 C 0.066 3.934 20 F -0.123 7.123 21 C -0.189 4.189 22 C 0.001 3.999 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.128 0.872 26 H 0.090 0.910 27 H 0.259 0.741 28 H 0.157 0.843 29 H 0.182 0.818 30 H 0.181 0.819 31 H 0.158 0.842 32 H 0.091 0.909 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.434 -8.910 -11.219 14.398 hybrid contribution -0.675 2.059 -0.206 2.177 sum 0.759 -6.850 -11.425 13.343 Atomic orbital electron populations 1.69955 1.06515 1.27931 1.49763 1.25445 0.95514 1.01476 0.94205 0.85823 0.78977 0.80467 0.78033 1.20777 1.20238 1.20102 1.20962 0.92396 0.90948 1.51758 0.93883 1.20352 0.94417 0.91290 0.93159 1.24142 0.83992 0.93814 1.01188 1.49644 1.21731 1.48665 1.06784 1.21462 0.90437 0.83053 0.81774 1.93157 1.16800 1.58476 1.91767 1.41887 1.21115 1.61037 1.01644 1.17216 0.96676 0.93942 0.86904 1.21664 0.96508 0.95177 0.97735 1.21136 0.97138 1.00699 0.91282 1.21471 1.01253 0.91854 1.01478 1.17389 1.00222 0.89333 0.86451 1.91483 1.93970 1.68706 1.58157 1.20909 1.02544 1.00253 0.95240 1.23910 1.02068 1.00026 0.73856 0.92358 0.91905 0.87156 0.90975 0.74148 0.84284 0.81828 0.81889 0.84242 0.90923 0.86686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.45 13.29 21.45 0.28 -45.16 16 2 C 0.04 1.74 5.46 84.66 0.46 2.20 16 3 Si 0.94 40.79 29.54 68.60 2.03 42.82 16 4 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.52 -25.54 8.68 25.60 0.22 -25.32 16 8 H 0.04 2.25 7.81 -2.91 -0.02 2.22 16 9 C 0.03 1.10 3.67 -10.88 -0.04 1.06 16 10 C 0.09 3.18 8.02 86.44 0.69 3.87 16 11 N -0.56 -20.15 3.53 -724.15 -2.56 -22.71 16 12 C 0.59 21.71 7.96 179.06 1.42 23.13 16 13 S -0.73 -30.96 26.09 -56.49 -1.47 -32.44 16 14 N -0.63 -18.98 5.31 -190.01 -1.01 -19.99 16 15 C 0.15 4.23 5.93 38.16 0.23 4.46 16 16 C -0.09 -2.45 7.87 22.40 0.18 -2.27 16 17 C -0.08 -1.78 10.04 22.24 0.22 -1.56 16 18 C -0.14 -2.89 10.02 22.34 0.22 -2.67 16 19 C 0.09 2.13 7.30 22.36 0.16 2.29 16 20 F -0.14 -3.65 17.27 44.97 0.78 -2.87 16 21 C -0.17 -4.46 9.95 22.43 0.22 -4.24 16 22 C 0.12 4.36 8.10 86.49 0.70 5.06 16 23 H 0.27 12.93 8.31 -92.71 -0.77 12.16 16 24 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 25 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 26 H 0.07 2.68 8.09 -2.39 -0.02 2.66 16 27 H 0.42 10.64 8.44 -92.71 -0.78 9.85 16 28 H 0.14 4.35 6.11 -7.91 -0.05 4.30 16 29 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 30 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 31 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 32 H 0.07 2.87 8.09 -2.39 -0.02 2.85 16 33 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 Total: -1.00 -60.11 304.78 3.08 -57.03 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.33 Total: 17.29 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 4.70 Total: 6.03 kcal Atomic # 7 Polarization: -84.58 SS G_CDS: -3.28 Total: -87.86 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.78 Total: -2.87 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Atomic # 16 Polarization: -30.96 SS G_CDS: -1.47 Total: -32.44 kcal Total: -60.11 3.08 -57.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197607099.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.040 kcal (2) G-P(sol) polarization free energy of solvation -60.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds