Wall clock time and date at job start Tue Mar 31 2020 01:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37043 * 119.99907 * 2 1 4 4 H 1.08005 * 120.00227 * 208.75365 * 3 2 1 5 5 C 1.38881 * 120.00008 * 28.76280 * 3 2 1 6 6 N 1.31482 * 120.00132 * 8.15048 * 5 3 2 7 7 Si 1.86803 * 120.00131 * 188.16450 * 5 3 2 8 8 H 1.48500 * 109.47114 * 59.99174 * 7 5 3 9 9 H 1.48497 * 109.47396 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46670 * 299.99362 * 7 5 3 11 11 C 1.34773 * 119.99776 * 180.02562 * 2 1 3 12 12 S 1.71201 * 119.99800 * 180.02562 * 11 2 1 13 13 N 1.34770 * 120.00377 * 359.97438 * 11 2 1 14 14 C 1.40051 * 120.00246 * 184.12924 * 13 11 2 15 15 C 1.38859 * 120.00305 * 135.69429 * 14 13 11 16 16 C 1.38170 * 120.06594 * 179.76780 * 15 14 13 17 17 C 1.38565 * 120.12089 * 0.42480 * 16 15 14 18 18 C 1.39285 * 119.94297 * 359.57005 * 17 16 15 19 19 C 1.38493 * 119.89912 * 0.22101 * 18 17 16 20 20 O 1.36511 * 108.64044 * 180.25195 * 18 17 16 21 21 C 1.43978 * 105.49866 * 342.69853 * 20 18 17 22 22 O 1.36602 * 131.43999 * 179.88238 * 17 16 15 23 23 H 1.08996 * 109.47313 * 264.44687 * 1 2 3 24 24 H 1.09003 * 109.47092 * 24.45281 * 1 2 3 25 25 H 1.09003 * 109.46951 * 144.44741 * 1 2 3 26 26 H 0.96998 * 119.99841 * 180.02562 * 6 5 3 27 27 H 0.97002 * 119.99917 * 4.12833 * 13 11 2 28 28 H 1.07996 * 119.96694 * 0.02562 * 15 14 13 29 29 H 1.08001 * 119.94277 * 180.30847 * 16 15 14 30 30 H 1.07998 * 120.00945 * 180.02562 * 19 18 17 31 31 H 1.09001 * 110.57402 * 268.58951 * 21 20 18 32 32 H 1.09007 * 110.57002 * 145.72073 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1502 1.1868 0.0000 4 1 3.1304 1.2446 -0.4499 5 6 1.5843 2.3154 0.5787 6 7 0.4678 2.2124 1.2654 7 14 2.4092 3.9797 0.3813 8 1 2.4957 4.3213 -1.0613 9 1 1.6118 5.0144 1.0876 10 1 3.7757 3.9266 0.9603 11 6 2.1388 -1.1672 -0.0005 12 16 3.8508 -1.1672 0.0001 13 7 1.4650 -2.3344 -0.0005 14 6 2.1626 -3.5457 0.0863 15 6 1.7120 -4.5470 0.9363 16 6 2.3965 -5.7444 1.0194 17 6 3.5389 -5.9463 0.2617 18 6 3.9932 -4.9438 -0.5919 19 6 3.3041 -3.7455 -0.6778 20 8 5.1201 -5.3857 -1.2231 21 6 5.5819 -6.5064 -0.4462 22 8 4.3821 -7.0167 0.1649 23 1 -0.3634 -0.0994 1.0228 24 1 -0.3633 0.9355 -0.4254 25 1 -0.3633 -0.8361 -0.5976 26 1 0.0724 3.0007 1.6693 27 1 0.4969 -2.3354 -0.0606 28 1 0.8234 -4.3913 1.5300 29 1 2.0415 -6.5237 1.6774 30 1 3.6545 -2.9672 -1.3394 31 1 6.2900 -6.1790 0.3151 32 1 6.0332 -7.2600 -1.0917 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198273576.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:34 Heat of formation + Delta-G solvation = 2.747656 kcal Electronic energy + Delta-G solvation = -19204.323342 eV Core-core repulsion = 16065.173440 eV Total energy + Delta-G solvation = -3139.149902 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.76213 -39.13687 -37.43137 -35.91692 -34.59995 -32.21006 -30.10506 -28.67495 -27.52180 -25.89207 -25.06935 -22.85956 -22.34031 -20.87159 -19.00744 -17.71622 -17.57056 -17.25025 -16.69486 -16.23754 -15.38690 -14.91661 -14.55569 -14.14280 -13.97299 -13.70764 -13.54785 -13.35575 -12.69781 -12.63478 -12.49925 -11.96807 -11.81202 -11.65189 -11.21507 -11.03141 -10.86257 -10.63215 -10.43300 -9.95188 -9.53990 -8.80168 -8.24901 -7.50928 -6.97787 -6.68491 -5.87898 -4.43968 1.43101 1.70053 2.51513 2.94075 3.03089 3.06040 3.13602 3.31478 3.68083 3.78358 4.01903 4.04488 4.49612 4.63351 4.89356 4.92105 5.06718 5.36656 5.43537 5.59068 5.62711 5.94714 6.13323 6.16282 6.44337 6.53147 6.54100 6.62111 6.86088 7.06137 7.11300 7.30425 7.59504 7.94040 8.16262 8.67483 8.86650 10.07676 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.035491 B = 0.004523 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.742865 B = 6188.693050 C = 6763.140847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.346 5.346 3 C -0.289 4.289 4 H 0.133 0.867 5 C 0.042 3.958 6 N -0.856 5.856 7 Si 0.948 3.052 8 H -0.265 1.265 9 H -0.280 1.280 10 H -0.261 1.261 11 C 0.446 3.554 12 S -0.731 6.731 13 N -0.658 5.658 14 C 0.180 3.820 15 C -0.134 4.134 16 C -0.099 4.099 17 C 0.011 3.989 18 C 0.032 3.968 19 C -0.054 4.054 20 O -0.308 6.308 21 C 0.214 3.786 22 O -0.317 6.317 23 H 0.074 0.926 24 H 0.093 0.907 25 H 0.037 0.963 26 H 0.281 0.719 27 H 0.397 0.603 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.164 0.836 31 H 0.078 0.922 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.251 -10.240 -1.634 10.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.029 5.029 3 C -0.421 4.421 4 H 0.150 0.850 5 C -0.168 4.168 6 N -0.489 5.489 7 Si 0.772 3.228 8 H -0.190 1.190 9 H -0.205 1.205 10 H -0.186 1.186 11 C 0.088 3.912 12 S -0.596 6.596 13 N -0.291 5.291 14 C 0.083 3.917 15 C -0.156 4.156 16 C -0.119 4.119 17 C -0.033 4.033 18 C -0.014 4.014 19 C -0.079 4.079 20 O -0.224 6.224 21 C 0.102 3.898 22 O -0.233 6.233 23 H 0.092 0.908 24 H 0.112 0.888 25 H 0.056 0.944 26 H 0.092 0.908 27 H 0.235 0.765 28 H 0.150 0.850 29 H 0.148 0.852 30 H 0.182 0.818 31 H 0.096 0.904 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.298 -9.948 -1.630 10.164 hybrid contribution -0.934 0.723 0.168 1.193 sum -2.233 -9.225 -1.462 9.603 Atomic orbital electron populations 1.21995 0.80356 1.01817 1.02202 1.42976 1.05641 1.03774 1.50489 1.20435 1.04350 0.82368 1.34994 0.84985 1.25741 0.95963 1.01476 0.93635 1.69969 1.18188 1.32159 1.28621 0.85611 0.79689 0.78217 0.79295 1.19013 1.20470 1.18576 1.21447 0.93903 0.80648 0.95222 1.92455 0.92945 1.92822 1.81382 1.41640 1.08248 1.02151 1.77017 1.16790 0.94047 0.84926 0.95890 1.20588 1.02322 0.93417 0.99288 1.19540 0.94146 0.98019 1.00223 1.19725 0.96366 0.86159 1.01099 1.19420 0.90867 0.94861 0.96292 1.20611 0.94195 0.92358 1.00777 1.87336 1.40085 1.46457 1.48560 1.25493 0.87417 0.85623 0.91283 1.87290 1.26103 1.30777 1.79178 0.90792 0.88816 0.94447 0.90822 0.76452 0.84975 0.85163 0.81834 0.90424 0.85865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.55 8.36 59.85 0.50 2.05 16 2 N -0.35 -7.99 3.00 -124.14 -0.37 -8.36 16 3 C -0.29 -7.23 8.87 -14.98 -0.13 -7.37 16 4 H 0.13 3.54 6.79 -52.48 -0.36 3.18 16 5 C 0.04 0.97 5.12 -17.46 -0.09 0.88 16 6 N -0.86 -19.94 10.88 55.49 0.60 -19.34 16 7 Si 0.95 18.78 29.56 -169.99 -5.02 13.76 16 8 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 9 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 10 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 11 C 0.45 10.32 7.52 -86.93 -0.65 9.67 16 12 S -0.73 -19.47 24.36 -107.50 -2.62 -22.09 16 13 N -0.66 -12.27 5.20 -11.39 -0.06 -12.33 16 14 C 0.18 3.28 5.96 -83.66 -0.50 2.78 16 15 C -0.13 -2.03 9.96 -39.38 -0.39 -2.42 16 16 C -0.10 -1.45 10.05 -39.49 -0.40 -1.85 16 17 C 0.01 0.18 7.15 -39.07 -0.28 -0.09 16 18 C 0.03 0.59 7.15 -39.10 -0.28 0.31 16 19 C -0.05 -1.08 7.88 -39.27 -0.31 -1.39 16 20 O -0.31 -5.29 11.40 -45.73 -0.52 -5.82 16 21 C 0.21 2.76 8.89 101.05 0.90 3.66 16 22 O -0.32 -4.79 11.41 -46.03 -0.53 -5.32 16 23 H 0.07 1.43 7.83 -51.93 -0.41 1.02 16 24 H 0.09 1.85 6.90 -51.93 -0.36 1.49 16 25 H 0.04 0.56 6.61 -51.93 -0.34 0.22 16 26 H 0.28 6.17 8.31 -40.82 -0.34 5.84 16 27 H 0.40 6.08 6.64 -40.82 -0.27 5.81 16 28 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 29 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.16 3.66 5.99 -41.56 -0.25 3.41 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.12 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 285.49 15.07 4.30 4.30 Total: -1.00 -30.54 285.49 -8.66 -39.20 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -2.81 Total: 9.76 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: -1.63 Total: 6.23 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.17 Total: -40.03 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -1.05 Total: -11.13 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.02 Total: 13.76 kcal Atomic # 16 Polarization: -19.47 SS G_CDS: -2.62 Total: -22.09 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.54 -8.66 -39.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198273576.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.949 kcal (2) G-P(sol) polarization free energy of solvation -30.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds