Wall clock time and date at job start Tue Mar 31 2020 01:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37043 * 119.99907 * 2 1 4 4 H 1.08005 * 120.00227 * 208.75365 * 3 2 1 5 5 C 1.38881 * 120.00008 * 28.76280 * 3 2 1 6 6 N 1.31482 * 120.00132 * 8.15048 * 5 3 2 7 7 Si 1.86803 * 120.00131 * 188.16450 * 5 3 2 8 8 H 1.48500 * 109.47114 * 59.99174 * 7 5 3 9 9 H 1.48497 * 109.47396 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46670 * 299.99362 * 7 5 3 11 11 C 1.34773 * 119.99776 * 180.02562 * 2 1 3 12 12 S 1.71201 * 119.99800 * 180.02562 * 11 2 1 13 13 N 1.34770 * 120.00377 * 359.97438 * 11 2 1 14 14 C 1.40051 * 120.00246 * 184.12924 * 13 11 2 15 15 C 1.38859 * 120.00305 * 135.69429 * 14 13 11 16 16 C 1.38170 * 120.06594 * 179.76780 * 15 14 13 17 17 C 1.38565 * 120.12089 * 0.42480 * 16 15 14 18 18 C 1.39285 * 119.94297 * 359.57005 * 17 16 15 19 19 C 1.38493 * 119.89912 * 0.22101 * 18 17 16 20 20 O 1.36511 * 108.64044 * 180.25195 * 18 17 16 21 21 C 1.43978 * 105.49866 * 342.69853 * 20 18 17 22 22 O 1.36602 * 131.43999 * 179.88238 * 17 16 15 23 23 H 1.08996 * 109.47313 * 264.44687 * 1 2 3 24 24 H 1.09003 * 109.47092 * 24.45281 * 1 2 3 25 25 H 1.09003 * 109.46951 * 144.44741 * 1 2 3 26 26 H 0.96998 * 119.99841 * 180.02562 * 6 5 3 27 27 H 0.97002 * 119.99917 * 4.12833 * 13 11 2 28 28 H 1.07996 * 119.96694 * 0.02562 * 15 14 13 29 29 H 1.08001 * 119.94277 * 180.30847 * 16 15 14 30 30 H 1.07998 * 120.00945 * 180.02562 * 19 18 17 31 31 H 1.09001 * 110.57402 * 268.58951 * 21 20 18 32 32 H 1.09007 * 110.57002 * 145.72073 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1502 1.1868 0.0000 4 1 3.1304 1.2446 -0.4499 5 6 1.5843 2.3154 0.5787 6 7 0.4678 2.2124 1.2654 7 14 2.4092 3.9797 0.3813 8 1 2.4957 4.3213 -1.0613 9 1 1.6118 5.0144 1.0876 10 1 3.7757 3.9266 0.9603 11 6 2.1388 -1.1672 -0.0005 12 16 3.8508 -1.1672 0.0001 13 7 1.4650 -2.3344 -0.0005 14 6 2.1626 -3.5457 0.0863 15 6 1.7120 -4.5470 0.9363 16 6 2.3965 -5.7444 1.0194 17 6 3.5389 -5.9463 0.2617 18 6 3.9932 -4.9438 -0.5919 19 6 3.3041 -3.7455 -0.6778 20 8 5.1201 -5.3857 -1.2231 21 6 5.5819 -6.5064 -0.4462 22 8 4.3821 -7.0167 0.1649 23 1 -0.3634 -0.0994 1.0228 24 1 -0.3633 0.9355 -0.4254 25 1 -0.3633 -0.8361 -0.5976 26 1 0.0724 3.0007 1.6693 27 1 0.4969 -2.3354 -0.0606 28 1 0.8234 -4.3913 1.5300 29 1 2.0415 -6.5237 1.6774 30 1 3.6545 -2.9672 -1.3394 31 1 6.2900 -6.1790 0.3151 32 1 6.0332 -7.2600 -1.0917 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198273576.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:33 Heat of formation + Delta-G solvation = -16.183779 kcal Electronic energy + Delta-G solvation = -19205.144270 eV Core-core repulsion = 16065.173440 eV Total energy + Delta-G solvation = -3139.970831 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.99096 -40.71379 -38.94259 -37.15090 -36.13487 -33.94321 -31.41768 -30.04947 -29.15325 -27.40684 -26.39990 -24.26286 -23.71403 -22.46804 -20.61622 -19.34507 -18.86565 -18.60656 -18.05285 -17.61945 -16.99390 -16.38841 -16.14315 -15.62022 -15.46302 -15.26342 -14.91640 -14.73477 -13.98984 -13.88193 -13.74773 -13.54037 -13.41177 -13.11291 -12.87149 -12.71734 -12.24204 -12.15175 -11.89785 -11.76352 -11.18763 -10.35375 -9.69460 -8.96056 -8.73988 -8.60025 -7.87503 -6.31814 0.06085 0.38473 0.81303 1.34453 1.44793 1.51285 1.53869 1.82034 2.10619 2.36474 2.65953 2.70305 2.81486 2.89845 3.63663 3.91356 4.10527 4.18588 4.20956 4.23756 4.39706 4.61332 4.68323 4.77927 4.97957 5.22339 5.23003 5.25901 5.31935 5.41246 5.53751 5.80777 6.22076 6.34081 6.40953 6.91372 7.03690 8.28423 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.035491 B = 0.004523 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.742865 B = 6188.693050 C = 6763.140847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.352 5.352 3 C -0.323 4.323 4 H 0.103 0.897 5 C 0.019 3.981 6 N -0.863 5.863 7 Si 1.002 2.998 8 H -0.260 1.260 9 H -0.262 1.262 10 H -0.277 1.277 11 C 0.458 3.542 12 S -0.813 6.813 13 N -0.638 5.638 14 C 0.155 3.845 15 C -0.115 4.115 16 C -0.088 4.088 17 C 0.011 3.989 18 C 0.012 3.988 19 C -0.078 4.078 20 O -0.332 6.332 21 C 0.206 3.794 22 O -0.317 6.317 23 H 0.073 0.927 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.289 0.711 27 H 0.416 0.584 28 H 0.170 0.830 29 H 0.171 0.829 30 H 0.127 0.873 31 H 0.091 0.909 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.066 -11.629 -0.563 12.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.034 5.034 3 C -0.455 4.455 4 H 0.121 0.879 5 C -0.190 4.190 6 N -0.496 5.496 7 Si 0.824 3.176 8 H -0.184 1.184 9 H -0.186 1.186 10 H -0.203 1.203 11 C 0.096 3.904 12 S -0.681 6.681 13 N -0.272 5.272 14 C 0.059 3.941 15 C -0.136 4.136 16 C -0.108 4.108 17 C -0.034 4.034 18 C -0.034 4.034 19 C -0.103 4.103 20 O -0.249 6.249 21 C 0.095 3.905 22 O -0.234 6.234 23 H 0.092 0.908 24 H 0.103 0.897 25 H 0.096 0.904 26 H 0.100 0.900 27 H 0.258 0.742 28 H 0.187 0.813 29 H 0.188 0.812 30 H 0.144 0.856 31 H 0.109 0.891 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -3.173 -11.398 -0.563 11.845 hybrid contribution -0.370 0.999 -0.162 1.078 sum -3.543 -10.399 -0.725 11.010 Atomic orbital electron populations 1.22086 0.77687 1.03174 1.02868 1.43151 1.07189 1.03141 1.49908 1.20271 1.04251 0.83930 1.37049 0.87911 1.26341 0.96363 1.03457 0.92830 1.69983 1.18303 1.33207 1.28064 0.84837 0.78084 0.75180 0.79523 1.18407 1.18571 1.20286 1.21035 0.92381 0.82087 0.94897 1.92570 0.97540 1.93948 1.84000 1.41407 1.08963 1.01004 1.75826 1.17058 0.94318 0.85421 0.97266 1.20953 1.02782 0.92138 0.97736 1.20036 0.92754 0.98543 0.99437 1.20010 0.96920 0.85862 1.00569 1.19549 0.91456 0.95190 0.97182 1.20363 0.95811 0.92540 1.01536 1.87299 1.40092 1.47893 1.49655 1.26028 0.86744 0.85544 0.92209 1.87278 1.26541 1.30316 1.79250 0.90814 0.89668 0.90374 0.90047 0.74196 0.81304 0.81177 0.85573 0.89129 0.81727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.14 8.36 127.77 1.07 4.21 16 2 N -0.35 -16.30 3.00 -546.67 -1.64 -17.94 16 3 C -0.32 -16.54 8.87 84.03 0.74 -15.79 16 4 H 0.10 5.82 6.79 -2.91 -0.02 5.80 16 5 C 0.02 0.88 5.12 84.90 0.43 1.32 16 6 N -0.86 -39.28 10.88 21.66 0.24 -39.05 16 7 Si 1.00 38.40 29.56 68.60 2.03 40.43 16 8 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 9 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 10 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 11 C 0.46 21.47 7.52 179.06 1.35 22.82 16 12 S -0.81 -45.51 24.36 -56.49 -1.38 -46.89 16 13 N -0.64 -23.21 5.20 -189.93 -0.99 -24.19 16 14 C 0.15 5.52 5.96 38.11 0.23 5.74 16 15 C -0.12 -3.10 9.96 22.40 0.22 -2.88 16 16 C -0.09 -2.26 10.05 22.33 0.22 -2.04 16 17 C 0.01 0.35 7.15 22.60 0.16 0.51 16 18 C 0.01 0.46 7.15 22.58 0.16 0.62 16 19 C -0.08 -3.19 7.88 22.47 0.18 -3.01 16 20 O -0.33 -11.55 11.40 -76.18 -0.87 -12.42 16 21 C 0.21 4.97 8.89 113.37 1.01 5.98 16 22 O -0.32 -8.85 11.41 -77.25 -0.88 -9.73 16 23 H 0.07 2.70 7.83 -2.39 -0.02 2.68 16 24 H 0.08 3.26 6.90 -2.39 -0.02 3.24 16 25 H 0.08 2.15 6.61 -2.39 -0.02 2.14 16 26 H 0.29 12.21 8.31 -92.71 -0.77 11.44 16 27 H 0.42 11.72 6.64 -92.71 -0.62 11.10 16 28 H 0.17 3.32 8.06 -2.91 -0.02 3.29 16 29 H 0.17 3.06 8.06 -2.91 -0.02 3.03 16 30 H 0.13 6.09 5.99 -9.86 -0.06 6.03 16 31 H 0.09 1.94 8.14 -2.39 -0.02 1.93 16 32 H 0.17 2.51 8.14 -2.38 -0.02 2.49 16 Total: -1.00 -70.00 285.49 2.81 -67.20 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 0.52 Total: 25.12 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: 5.78 Total: 17.48 kcal Atomic # 7 Polarization: -78.79 SS G_CDS: -2.39 Total: -81.18 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -1.75 Total: -22.15 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Atomic # 16 Polarization: -45.51 SS G_CDS: -1.38 Total: -46.89 kcal Total: -70.00 2.81 -67.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198273576.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.014 kcal (2) G-P(sol) polarization free energy of solvation -70.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds