Wall clock time and date at job start Tue Mar 31 2020 01:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34761 * 116.99732 * 2 1 4 4 O 1.21511 * 120.00517 * 359.97438 * 3 2 1 5 5 C 1.47352 * 119.99796 * 179.97438 * 3 2 1 6 6 C 1.39766 * 120.20841 * 5.46748 * 5 3 2 7 7 C 1.37767 * 119.91435 * 180.29843 * 6 5 3 8 8 C 1.38603 * 120.34723 * 359.69877 * 7 6 5 9 9 C 1.37990 * 120.42332 * 359.97438 * 8 7 6 10 10 C 1.38894 * 120.07637 * 0.02706 * 9 8 7 11 11 N 1.39134 * 120.17306 * 179.97438 * 10 9 8 12 12 C 1.34770 * 120.00392 * 47.33517 * 11 10 9 13 13 S 1.71205 * 119.99984 * 355.22866 * 12 11 10 14 14 N 1.34773 * 120.00253 * 174.95781 * 12 11 10 15 15 C 1.37033 * 120.00336 * 180.28081 * 14 12 11 16 16 H 1.08007 * 119.99858 * 359.97438 * 15 14 12 17 17 C 1.38881 * 120.00146 * 180.02562 * 15 14 12 18 18 N 1.31477 * 120.00160 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00216 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46922 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47726 * 119.99510 * 19 17 15 22 22 H 1.48504 * 109.47167 * 239.99654 * 19 17 15 23 23 H 1.09006 * 109.47467 * 60.00522 * 1 2 3 24 24 H 1.08998 * 109.47199 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47638 * 300.00168 * 1 2 3 26 26 H 1.07994 * 120.04650 * 0.02562 * 6 5 3 27 27 H 1.08001 * 119.82587 * 179.72207 * 7 6 5 28 28 H 1.07995 * 119.78538 * 180.02562 * 8 7 6 29 29 H 1.08003 * 119.95871 * 180.02562 * 9 8 7 30 30 H 0.96996 * 119.99383 * 227.33983 * 11 10 9 31 31 H 0.97007 * 119.99477 * 0.26977 * 14 12 11 32 32 H 0.97005 * 120.00349 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2008 0.0000 4 8 1.4019 2.2199 -0.0005 5 6 3.5352 1.2779 0.0006 6 6 4.3004 0.1140 -0.1140 7 6 5.6758 0.1925 -0.1066 8 6 6.3065 1.4215 0.0077 9 6 5.5648 2.5802 0.1148 10 6 4.1771 2.5214 0.1093 11 7 3.4273 3.6884 0.2177 12 6 3.7305 4.7575 -0.5448 13 16 5.1108 4.7232 -1.5570 14 7 2.9440 5.8515 -0.5146 15 6 3.2490 6.9364 -1.2942 16 1 4.1199 6.9149 -1.9326 17 6 2.4388 8.0640 -1.2627 18 7 1.3789 8.0904 -0.4852 19 14 2.8550 9.5432 -2.3249 20 1 4.0888 9.2628 -3.1023 21 1 1.7322 9.8141 -3.2583 22 1 3.0752 10.7288 -1.4582 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 3.8143 -0.8462 -0.2037 27 1 6.2658 -0.7082 -0.1907 28 1 7.3852 1.4725 0.0121 29 1 6.0640 3.5338 0.2031 30 1 2.6865 3.7324 0.8422 31 1 2.1619 5.8709 0.0590 32 1 0.8128 8.8779 -0.4634 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198988814.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:34 Heat of formation + Delta-G solvation = -38.773467 kcal Electronic energy + Delta-G solvation = -19140.415844 eV Core-core repulsion = 15999.465452 eV Total energy + Delta-G solvation = -3140.950393 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.53437 -38.97740 -37.40407 -36.26424 -34.82196 -32.27005 -31.24679 -29.16355 -27.64982 -25.60271 -23.76573 -23.07353 -21.47825 -20.81300 -18.95837 -17.87131 -17.54024 -16.87998 -16.36837 -16.20150 -15.25253 -14.72277 -14.63486 -14.42988 -13.92098 -13.61330 -13.31964 -13.22019 -12.94204 -12.21253 -12.15202 -12.00329 -11.66480 -11.35827 -11.09888 -10.90156 -10.74655 -10.52936 -10.43842 -10.05193 -9.85798 -9.04123 -8.71852 -8.00825 -7.12117 -6.68639 -5.90114 -4.37422 0.97430 1.70196 2.53467 2.80147 2.82446 3.01553 3.09692 3.12295 3.35042 3.74815 3.97927 4.18164 4.70915 4.89653 4.98473 5.08764 5.16872 5.17742 5.35271 5.45369 5.64531 5.78282 5.88197 6.26033 6.39708 6.53574 6.70729 6.84326 6.97148 7.09213 7.16786 7.53099 7.90561 7.99407 8.23184 8.73611 8.88211 10.00564 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.019868 B = 0.005462 C = 0.004439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.980461 B = 5124.792232 C = 6305.567771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.511 3.489 4 O -0.508 6.508 5 C -0.166 4.166 6 C -0.065 4.065 7 C -0.151 4.151 8 C -0.083 4.083 9 C -0.085 4.085 10 C 0.245 3.755 11 N -0.649 5.649 12 C 0.428 3.572 13 S -0.745 6.745 14 N -0.448 5.448 15 C -0.281 4.281 16 H 0.149 0.851 17 C 0.034 3.966 18 N -0.860 5.860 19 Si 0.952 3.048 20 H -0.253 1.253 21 H -0.274 1.274 22 H -0.273 1.273 23 H 0.062 0.938 24 H 0.099 0.901 25 H 0.061 0.939 26 H 0.131 0.869 27 H 0.123 0.877 28 H 0.126 0.874 29 H 0.158 0.842 30 H 0.401 0.599 31 H 0.396 0.604 32 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.470 -12.619 4.622 13.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.275 6.275 3 C 0.357 3.643 4 O -0.397 6.397 5 C -0.171 4.171 6 C -0.085 4.085 7 C -0.170 4.170 8 C -0.104 4.104 9 C -0.109 4.109 10 C 0.146 3.854 11 N -0.281 5.281 12 C 0.068 3.932 13 S -0.613 6.613 14 N -0.047 5.047 15 C -0.416 4.416 16 H 0.167 0.833 17 C -0.177 4.177 18 N -0.493 5.493 19 Si 0.776 3.224 20 H -0.177 1.177 21 H -0.199 1.199 22 H -0.199 1.199 23 H 0.081 0.919 24 H 0.117 0.883 25 H 0.080 0.920 26 H 0.149 0.851 27 H 0.141 0.859 28 H 0.144 0.856 29 H 0.175 0.825 30 H 0.240 0.760 31 H 0.232 0.768 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.038 -11.891 3.873 12.506 hybrid contribution -1.889 0.779 0.599 2.130 sum -1.928 -11.113 4.472 12.133 Atomic orbital electron populations 1.23217 0.76516 1.03321 1.02605 1.86544 1.23119 1.33001 1.84798 1.21203 0.89128 0.81255 0.72710 1.90807 1.66864 1.35754 1.46248 1.18922 0.88465 0.94542 1.15159 1.21014 0.93799 0.96591 0.97117 1.20960 0.94058 0.97900 1.04053 1.21176 1.00016 0.91729 0.97504 1.21665 0.91784 1.00249 0.97196 1.17229 0.90770 0.83138 0.94307 1.41388 1.34673 1.10217 1.41781 1.20833 0.94871 0.83069 0.94457 1.92316 1.23571 1.91687 1.53766 1.41106 1.20222 1.10665 1.32729 1.21006 1.12211 0.89329 1.19046 0.83327 1.25872 0.94390 1.00411 0.97011 1.69688 1.13224 1.31520 1.34862 0.85410 0.79763 0.78218 0.79000 1.17665 1.19894 1.19873 0.91933 0.88275 0.92015 0.85147 0.85923 0.85643 0.82500 0.76012 0.76776 0.90272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.57 101.05 1.07 1.47 16 2 O -0.36 -5.02 9.83 -40.66 -0.40 -5.42 16 3 C 0.51 8.71 7.87 34.44 0.27 8.98 16 4 O -0.51 -9.90 14.03 -19.27 -0.27 -10.17 16 5 C -0.17 -2.81 5.89 -104.82 -0.62 -3.43 16 6 C -0.07 -0.91 9.61 -39.18 -0.38 -1.28 16 7 C -0.15 -1.93 10.02 -39.62 -0.40 -2.33 16 8 C -0.08 -1.20 10.03 -39.54 -0.40 -1.60 16 9 C -0.09 -1.54 7.86 -39.43 -0.31 -1.85 16 10 C 0.25 4.68 5.89 -83.50 -0.49 4.19 16 11 N -0.65 -13.45 4.14 -11.22 -0.05 -13.50 16 12 C 0.43 10.36 7.80 -86.93 -0.68 9.68 16 13 S -0.74 -19.72 24.35 -107.50 -2.62 -22.34 16 14 N -0.45 -11.05 5.29 -12.54 -0.07 -11.12 16 15 C -0.28 -7.26 9.50 -14.99 -0.14 -7.40 16 16 H 0.15 4.08 6.22 -52.48 -0.33 3.76 16 17 C 0.03 0.81 5.50 -17.47 -0.10 0.72 16 18 N -0.86 -21.13 13.05 55.49 0.72 -20.40 16 19 Si 0.95 19.16 29.55 -169.99 -5.02 14.14 16 20 H -0.25 -5.18 7.11 56.52 0.40 -4.78 16 21 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 22 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.13 1.50 7.62 -52.49 -0.40 1.10 16 27 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 28 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 29 H 0.16 3.17 6.28 -48.81 -0.31 2.86 16 30 H 0.40 7.75 7.30 -40.82 -0.30 7.45 16 31 H 0.40 9.41 7.92 -40.82 -0.32 9.09 16 32 H 0.29 6.52 8.31 -40.82 -0.34 6.18 16 LS Contribution 296.29 15.07 4.46 4.46 Total: -1.00 -30.56 296.29 -8.30 -38.87 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: -2.90 Total: 18.34 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -2.17 Total: 7.15 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.61 Total: -45.02 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.67 Total: -15.59 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.14 kcal Atomic # 16 Polarization: -19.72 SS G_CDS: -2.62 Total: -22.34 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.56 -8.30 -38.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198988814.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.093 kcal (2) G-P(sol) polarization free energy of solvation -30.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds