Wall clock time and date at job start Tue Mar 31 2020 01:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34761 * 116.99732 * 2 1 4 4 O 1.21511 * 120.00517 * 359.97438 * 3 2 1 5 5 C 1.47352 * 119.99796 * 179.97438 * 3 2 1 6 6 C 1.39766 * 120.20841 * 5.46748 * 5 3 2 7 7 C 1.37767 * 119.91435 * 180.29843 * 6 5 3 8 8 C 1.38603 * 120.34723 * 359.69877 * 7 6 5 9 9 C 1.37990 * 120.42332 * 359.97438 * 8 7 6 10 10 C 1.38894 * 120.07637 * 0.02706 * 9 8 7 11 11 N 1.39134 * 120.17306 * 179.97438 * 10 9 8 12 12 C 1.34770 * 120.00392 * 47.33517 * 11 10 9 13 13 S 1.71205 * 119.99984 * 355.22866 * 12 11 10 14 14 N 1.34773 * 120.00253 * 174.95781 * 12 11 10 15 15 C 1.37033 * 120.00336 * 180.28081 * 14 12 11 16 16 H 1.08007 * 119.99858 * 359.97438 * 15 14 12 17 17 C 1.38881 * 120.00146 * 180.02562 * 15 14 12 18 18 N 1.31477 * 120.00160 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00216 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46922 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47726 * 119.99510 * 19 17 15 22 22 H 1.48504 * 109.47167 * 239.99654 * 19 17 15 23 23 H 1.09006 * 109.47467 * 60.00522 * 1 2 3 24 24 H 1.08998 * 109.47199 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47638 * 300.00168 * 1 2 3 26 26 H 1.07994 * 120.04650 * 0.02562 * 6 5 3 27 27 H 1.08001 * 119.82587 * 179.72207 * 7 6 5 28 28 H 1.07995 * 119.78538 * 180.02562 * 8 7 6 29 29 H 1.08003 * 119.95871 * 180.02562 * 9 8 7 30 30 H 0.96996 * 119.99383 * 227.33983 * 11 10 9 31 31 H 0.97007 * 119.99477 * 0.26977 * 14 12 11 32 32 H 0.97005 * 120.00349 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2008 0.0000 4 8 1.4019 2.2199 -0.0005 5 6 3.5352 1.2779 0.0006 6 6 4.3004 0.1140 -0.1140 7 6 5.6758 0.1925 -0.1066 8 6 6.3065 1.4215 0.0077 9 6 5.5648 2.5802 0.1148 10 6 4.1771 2.5214 0.1093 11 7 3.4273 3.6884 0.2177 12 6 3.7305 4.7575 -0.5448 13 16 5.1108 4.7232 -1.5570 14 7 2.9440 5.8515 -0.5146 15 6 3.2490 6.9364 -1.2942 16 1 4.1199 6.9149 -1.9326 17 6 2.4388 8.0640 -1.2627 18 7 1.3789 8.0904 -0.4852 19 14 2.8550 9.5432 -2.3249 20 1 4.0888 9.2628 -3.1023 21 1 1.7322 9.8141 -3.2583 22 1 3.0752 10.7288 -1.4582 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 3.8143 -0.8462 -0.2037 27 1 6.2658 -0.7082 -0.1907 28 1 7.3852 1.4725 0.0121 29 1 6.0640 3.5338 0.2031 30 1 2.6865 3.7324 0.8422 31 1 2.1619 5.8709 0.0590 32 1 0.8128 8.8779 -0.4634 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198988814.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:33 Heat of formation + Delta-G solvation = -56.804933 kcal Electronic energy + Delta-G solvation = -19141.197747 eV Core-core repulsion = 15999.465452 eV Total energy + Delta-G solvation = -3141.732296 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.84701 -40.38186 -39.04276 -37.54342 -36.44127 -34.06875 -32.49788 -30.55663 -28.65469 -27.39601 -25.04875 -24.73816 -22.98153 -22.10383 -20.72482 -19.43089 -18.93601 -18.28343 -17.72209 -17.41571 -17.03853 -16.20582 -16.05450 -15.90535 -15.56433 -14.91988 -14.76046 -14.45600 -14.31707 -13.79597 -13.53313 -13.18078 -12.95427 -12.90151 -12.76817 -12.31048 -12.11753 -12.00967 -11.88089 -11.84289 -11.41273 -10.70126 -9.98748 -9.49916 -8.95729 -8.68957 -7.90299 -6.33356 -0.32938 0.36466 0.82235 1.34848 1.44103 1.49883 1.53122 1.56002 1.66597 2.05351 2.33079 2.80463 2.92143 3.13589 3.73163 4.01427 4.23155 4.29092 4.29614 4.49817 4.51433 4.61896 4.69509 5.03136 5.12435 5.19113 5.22485 5.36639 5.50284 5.62145 5.73168 6.06626 6.29818 6.37238 6.64650 6.83247 6.99352 8.18504 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.019868 B = 0.005462 C = 0.004439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.980461 B = 5124.792232 C = 6305.567771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.349 6.349 3 C 0.510 3.490 4 O -0.542 6.542 5 C -0.175 4.175 6 C -0.055 4.055 7 C -0.130 4.130 8 C -0.074 4.074 9 C -0.106 4.106 10 C 0.203 3.797 11 N -0.640 5.640 12 C 0.442 3.558 13 S -0.791 6.791 14 N -0.455 5.455 15 C -0.316 4.316 16 H 0.128 0.872 17 C 0.005 3.995 18 N -0.882 5.882 19 Si 1.016 2.984 20 H -0.264 1.264 21 H -0.263 1.263 22 H -0.260 1.260 23 H 0.053 0.947 24 H 0.142 0.858 25 H 0.061 0.939 26 H 0.163 0.837 27 H 0.171 0.829 28 H 0.154 0.846 29 H 0.127 0.873 30 H 0.405 0.595 31 H 0.398 0.602 32 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.312 -15.052 4.676 15.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.266 6.266 3 C 0.358 3.642 4 O -0.434 6.434 5 C -0.180 4.180 6 C -0.074 4.074 7 C -0.149 4.149 8 C -0.095 4.095 9 C -0.130 4.130 10 C 0.105 3.895 11 N -0.272 5.272 12 C 0.080 3.920 13 S -0.663 6.663 14 N -0.055 5.055 15 C -0.450 4.450 16 H 0.145 0.855 17 C -0.203 4.203 18 N -0.515 5.515 19 Si 0.835 3.165 20 H -0.187 1.187 21 H -0.188 1.188 22 H -0.184 1.184 23 H 0.072 0.928 24 H 0.160 0.840 25 H 0.080 0.920 26 H 0.181 0.819 27 H 0.189 0.811 28 H 0.171 0.829 29 H 0.145 0.855 30 H 0.245 0.755 31 H 0.234 0.766 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.115 -14.420 3.974 14.958 hybrid contribution -1.924 1.224 0.666 2.375 sum -1.809 -13.197 4.640 14.105 Atomic orbital electron populations 1.23570 0.74528 1.05982 1.02233 1.86524 1.24960 1.31053 1.84015 1.21336 0.89318 0.81637 0.71934 1.90791 1.67603 1.37071 1.47934 1.19118 0.88910 0.94697 1.15241 1.21474 0.94337 0.96624 0.94945 1.21484 0.93909 0.98730 1.00757 1.21560 1.01376 0.91167 0.95364 1.21500 0.91695 1.00621 0.99154 1.17575 0.91282 0.83195 0.97415 1.41316 1.34786 1.10014 1.41054 1.20734 0.93736 0.83698 0.93852 1.92264 1.25645 1.92612 1.55736 1.41066 1.20424 1.10823 1.33159 1.20897 1.12867 0.90769 1.20493 0.85463 1.26666 0.93832 1.02062 0.97699 1.69714 1.13695 1.32580 1.35527 0.84534 0.79184 0.75218 0.77520 1.18743 1.18801 1.18436 0.92842 0.84043 0.91972 0.81911 0.81147 0.82857 0.85527 0.75489 0.76568 0.89403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.57 113.37 1.20 1.78 16 2 O -0.35 -9.00 9.83 -56.72 -0.56 -9.56 16 3 C 0.51 16.99 7.87 70.22 0.55 17.54 16 4 O -0.54 -21.45 14.03 19.80 0.28 -21.17 16 5 C -0.18 -5.72 5.89 -19.99 -0.12 -5.84 16 6 C -0.05 -1.31 9.61 22.53 0.22 -1.09 16 7 C -0.13 -2.74 10.02 22.25 0.22 -2.52 16 8 C -0.07 -1.97 10.03 22.30 0.22 -1.74 16 9 C -0.11 -3.88 7.86 22.37 0.18 -3.70 16 10 C 0.20 7.82 5.89 38.66 0.23 8.05 16 11 N -0.64 -27.60 4.14 -189.42 -0.78 -28.38 16 12 C 0.44 22.39 7.80 179.06 1.40 23.79 16 13 S -0.79 -43.62 24.35 -56.49 -1.38 -45.00 16 14 N -0.45 -23.46 5.29 -193.58 -1.02 -24.48 16 15 C -0.32 -17.00 9.50 84.03 0.80 -16.20 16 16 H 0.13 7.35 6.22 -2.91 -0.02 7.33 16 17 C 0.01 0.26 5.50 84.90 0.47 0.73 16 18 N -0.88 -43.84 13.05 21.65 0.28 -43.56 16 19 Si 1.02 39.58 29.55 68.60 2.03 41.61 16 20 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 21 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 22 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 23 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 24 H 0.14 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.16 2.89 7.62 -2.91 -0.02 2.86 16 27 H 0.17 2.09 8.06 -2.91 -0.02 2.06 16 28 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 29 H 0.13 5.37 6.28 -5.25 -0.03 5.33 16 30 H 0.41 16.45 7.30 -92.71 -0.68 15.77 16 31 H 0.40 19.82 7.92 -92.70 -0.73 19.08 16 32 H 0.30 13.40 8.31 -92.70 -0.77 12.62 16 Total: -1.00 -69.48 296.29 3.97 -65.51 By element: Atomic # 1 Polarization: 44.50 SS G_CDS: -0.24 Total: 44.27 kcal Atomic # 6 Polarization: 15.42 SS G_CDS: 5.36 Total: 20.78 kcal Atomic # 7 Polarization: -94.90 SS G_CDS: -1.52 Total: -96.43 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.28 Total: -30.73 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Atomic # 16 Polarization: -43.62 SS G_CDS: -1.38 Total: -45.00 kcal Total: -69.48 3.97 -65.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198988814.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.704 kcal (2) G-P(sol) polarization free energy of solvation -69.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds