Wall clock time and date at job start Tue Mar 31 2020 02:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 119.99925 * 2 1 4 4 N 1.46497 * 109.47276 * 125.00177 * 3 2 1 5 5 C 1.34780 * 120.00232 * 179.97438 * 4 3 2 6 6 S 1.71195 * 119.99920 * 0.02562 * 5 4 3 7 7 N 1.34783 * 119.99956 * 179.97438 * 5 4 3 8 8 C 1.39976 * 119.99794 * 175.57274 * 7 5 4 9 9 C 1.39381 * 119.90917 * 45.19244 * 8 7 5 10 10 C 1.38370 * 120.46584 * 180.02562 * 9 8 7 11 11 C 1.38007 * 120.28856 * 359.97438 * 10 9 8 12 12 F 1.35092 * 120.09085 * 179.97438 * 11 10 9 13 13 C 1.41014 * 119.81358 * 359.97438 * 11 10 9 14 14 C 1.41288 * 120.22676 * 179.97438 * 13 11 10 15 15 H 1.07996 * 120.00163 * 326.64412 * 14 13 11 16 16 C 1.39926 * 119.99894 * 146.92229 * 14 13 11 17 17 N 1.30850 * 119.99977 * 0.86161 * 16 14 13 18 18 Si 1.86797 * 120.00085 * 180.86851 * 16 14 13 19 19 H 1.48498 * 109.47421 * 89.99468 * 18 16 14 20 20 H 1.48499 * 109.46964 * 209.99743 * 18 16 14 21 21 H 1.48503 * 109.46819 * 329.99511 * 18 16 14 22 22 C 1.38148 * 119.91077 * 225.42578 * 8 7 5 23 23 H 1.07998 * 120.00419 * 180.02562 * 1 2 3 24 24 H 1.08003 * 119.99635 * 0.02562 * 1 2 3 25 25 H 1.07995 * 119.99915 * 179.97438 * 2 1 3 26 26 H 1.08996 * 109.47548 * 4.99945 * 3 2 1 27 27 H 1.09004 * 109.46861 * 244.99490 * 3 2 1 28 28 H 0.97005 * 120.00164 * 359.97438 * 4 3 2 29 29 H 0.97000 * 119.99333 * 355.57455 * 7 5 4 30 30 H 1.08001 * 119.76804 * 359.97438 * 9 8 7 31 31 H 1.08001 * 119.85086 * 179.97438 * 10 9 8 32 32 H 0.96994 * 120.00382 * 180.02562 * 17 16 14 33 33 H 1.07993 * 120.14448 * 359.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 3.7790 2.4086 1.3328 6 16 3.6889 3.7453 0.2669 7 7 4.6345 2.4335 2.3740 8 6 5.5153 3.5101 2.5306 9 6 5.0519 4.8154 2.3755 10 6 5.9126 5.8881 2.5271 11 6 7.2413 5.6764 2.8346 12 9 8.0782 6.7266 2.9812 13 6 7.7227 4.3608 2.9952 14 6 9.0814 4.1339 3.3095 15 1 9.8423 4.7977 2.9265 16 6 9.4416 3.0459 4.1122 17 7 8.5218 2.2288 4.5579 18 14 11.2354 2.7599 4.5477 19 1 11.5598 3.4778 5.8065 20 1 11.4744 1.3059 4.7314 21 1 12.0981 3.2688 3.4513 22 6 6.8426 3.2757 2.8336 23 1 -0.5401 -0.9353 0.0004 24 1 -0.5400 0.9354 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3586 2.1316 0.0896 27 1 2.6214 1.4025 -0.9314 28 1 3.0446 0.5747 1.7356 29 1 4.6398 1.7053 3.0148 30 1 4.0138 4.9908 2.1345 31 1 5.5430 6.8955 2.4043 32 1 8.7714 1.4748 5.1146 33 1 7.2018 2.2640 2.9503 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200296029.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:33 Heat of formation + Delta-G solvation = 15.521750 kcal Electronic energy + Delta-G solvation = -18623.882200 eV Core-core repulsion = 15497.659014 eV Total energy + Delta-G solvation = -3126.223186 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.074 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -47.26563 -39.28909 -37.53361 -35.50876 -33.73960 -32.86252 -29.79031 -28.49005 -26.09208 -25.41381 -23.55716 -21.50770 -21.07733 -20.24662 -18.09665 -18.00732 -16.74321 -16.10557 -15.73839 -15.46497 -15.09657 -14.85857 -14.41590 -14.04893 -13.97464 -13.39901 -13.03175 -12.69037 -12.49624 -11.89617 -11.62940 -11.56458 -11.48470 -11.13680 -10.93694 -10.75795 -10.61864 -10.25063 -9.97140 -9.69149 -9.33063 -9.13228 -7.65145 -7.53353 -7.17865 -6.76940 -6.46645 -4.47020 1.57111 1.67155 2.34770 2.62231 2.75173 3.02946 3.04610 3.10392 3.15480 3.84724 3.91443 4.45224 4.55002 4.75737 5.31530 5.33318 5.49112 5.57098 5.90803 6.00215 6.12334 6.17786 6.31889 6.45088 6.56197 6.82429 6.89410 6.95727 7.16007 7.39477 7.53852 7.64800 7.86964 7.89060 8.04257 8.45229 8.71594 8.77357 10.16692 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.022308 B = 0.004513 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.847962 B = 6202.983323 C = 7244.478967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.180 4.180 3 C 0.156 3.844 4 N -0.692 5.692 5 C 0.556 3.444 6 S -0.635 6.635 7 N -0.611 5.611 8 C 0.104 3.896 9 C -0.139 4.139 10 C -0.132 4.132 11 C -0.001 4.001 12 F -0.160 7.160 13 C 0.081 3.919 14 C -0.456 4.456 15 H 0.081 0.919 16 C 0.072 3.928 17 N -0.819 5.819 18 Si 0.918 3.082 19 H -0.269 1.269 20 H -0.278 1.278 21 H -0.261 1.261 22 C -0.125 4.125 23 H 0.103 0.897 24 H 0.103 0.897 25 H 0.114 0.886 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.395 0.605 29 H 0.401 0.599 30 H 0.129 0.871 31 H 0.108 0.892 32 H 0.278 0.722 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.856 -8.260 -2.439 13.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.199 4.199 3 C 0.032 3.968 4 N -0.323 5.323 5 C 0.197 3.803 6 S -0.507 6.507 7 N -0.232 5.232 8 C 0.013 3.987 9 C -0.161 4.161 10 C -0.153 4.153 11 C -0.022 4.022 12 F -0.139 7.139 13 C 0.077 3.923 14 C -0.487 4.487 15 H 0.099 0.901 16 C -0.142 4.142 17 N -0.447 5.447 18 Si 0.743 3.257 19 H -0.194 1.194 20 H -0.203 1.203 21 H -0.185 1.185 22 C -0.147 4.147 23 H 0.121 0.879 24 H 0.121 0.879 25 H 0.132 0.868 26 H 0.107 0.893 27 H 0.111 0.889 28 H 0.231 0.769 29 H 0.238 0.762 30 H 0.146 0.854 31 H 0.126 0.874 32 H 0.089 0.911 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.926 -7.498 -3.111 13.612 hybrid contribution 0.978 -1.559 1.406 2.316 sum -9.948 -9.057 -1.705 13.561 Atomic orbital electron populations 1.24003 0.95707 1.02534 0.97701 1.23053 0.96329 0.98110 1.02412 1.20690 0.91375 0.95720 0.88970 1.44903 1.39718 1.16710 1.30942 1.22321 0.81388 0.89898 0.86666 1.93279 1.82782 1.27863 1.46807 1.42358 1.33904 1.23599 1.23341 1.17450 0.88814 0.85039 1.07418 1.20562 1.00517 0.89788 1.05252 1.20369 0.92108 0.98355 1.04422 1.18168 0.87535 0.83936 1.12559 1.91285 1.71980 1.56356 1.94253 1.17312 0.94362 0.88358 0.92221 1.19402 0.92519 1.09644 1.27120 0.90057 1.25812 0.99815 0.94269 0.94286 1.69697 1.34523 1.12690 1.27803 0.86134 0.81865 0.77884 0.79808 1.19414 1.20310 1.18521 1.21184 0.89206 1.00640 1.03693 0.87870 0.87886 0.86769 0.89348 0.88871 0.76909 0.76234 0.85359 0.87368 0.91111 0.84475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 14.32 29.01 0.42 -0.64 16 2 C -0.18 -1.34 9.63 -36.03 -0.35 -1.69 16 3 C 0.16 1.62 5.57 -5.20 -0.03 1.59 16 4 N -0.69 -7.97 5.55 -63.21 -0.35 -8.32 16 5 C 0.56 9.11 7.85 -86.91 -0.68 8.43 16 6 S -0.63 -13.06 24.79 -107.50 -2.66 -15.72 16 7 N -0.61 -10.39 5.32 -11.43 -0.06 -10.45 16 8 C 0.10 2.26 5.93 -83.75 -0.50 1.76 16 9 C -0.14 -3.10 7.87 -39.11 -0.31 -3.40 16 10 C -0.13 -3.05 10.00 -39.62 -0.40 -3.45 16 11 C 0.00 -0.03 7.31 -38.61 -0.28 -0.31 16 12 F -0.16 -4.04 16.80 2.25 0.04 -4.00 16 13 C 0.08 2.13 5.55 -106.78 -0.59 1.54 16 14 C -0.46 -12.08 8.72 -37.79 -0.33 -12.41 16 15 H 0.08 2.15 7.81 -52.49 -0.41 1.74 16 16 C 0.07 1.78 5.40 -17.34 -0.09 1.68 16 17 N -0.82 -19.99 10.63 55.55 0.59 -19.40 16 18 Si 0.92 18.68 29.56 -169.99 -5.02 13.65 16 19 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 20 H -0.28 -5.46 7.11 56.52 0.40 -5.05 16 21 H -0.26 -5.32 7.11 56.52 0.40 -4.91 16 22 C -0.13 -3.03 8.57 -38.71 -0.33 -3.36 16 23 H 0.10 0.52 8.06 -52.49 -0.42 0.10 16 24 H 0.10 0.66 7.84 -52.48 -0.41 0.25 16 25 H 0.11 0.73 8.06 -52.49 -0.42 0.31 16 26 H 0.09 1.00 7.64 -51.93 -0.40 0.60 16 27 H 0.09 1.09 7.99 -51.93 -0.41 0.68 16 28 H 0.39 3.38 8.48 -40.82 -0.35 3.03 16 29 H 0.40 5.55 8.84 -40.82 -0.36 5.19 16 30 H 0.13 2.81 6.05 -43.06 -0.26 2.55 16 31 H 0.11 2.25 8.06 -52.49 -0.42 1.83 16 32 H 0.28 6.20 8.30 -40.82 -0.34 5.86 16 33 H 0.14 3.36 6.15 -52.49 -0.32 3.04 16 LS Contribution 303.95 15.07 4.58 4.58 Total: -1.00 -30.09 303.95 -9.69 -39.78 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -3.33 Total: 10.14 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -3.47 Total: -10.26 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.18 Total: -38.17 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.04 Total: -4.00 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.02 Total: 13.65 kcal Atomic # 16 Polarization: -13.06 SS G_CDS: -2.66 Total: -15.72 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.09 -9.69 -39.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200296029.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.302 kcal (2) G-P(sol) polarization free energy of solvation -30.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds