Wall clock time and date at job start Tue Mar 31 2020 02:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 119.99925 * 2 1 4 4 N 1.46497 * 109.47276 * 125.00177 * 3 2 1 5 5 C 1.34780 * 120.00232 * 179.97438 * 4 3 2 6 6 S 1.71195 * 119.99920 * 0.02562 * 5 4 3 7 7 N 1.34783 * 119.99956 * 179.97438 * 5 4 3 8 8 C 1.39976 * 119.99794 * 175.57274 * 7 5 4 9 9 C 1.39381 * 119.90917 * 45.19244 * 8 7 5 10 10 C 1.38370 * 120.46584 * 180.02562 * 9 8 7 11 11 C 1.38007 * 120.28856 * 359.97438 * 10 9 8 12 12 F 1.35092 * 120.09085 * 179.97438 * 11 10 9 13 13 C 1.41014 * 119.81358 * 359.97438 * 11 10 9 14 14 C 1.41288 * 120.22676 * 179.97438 * 13 11 10 15 15 H 1.07996 * 120.00163 * 326.64412 * 14 13 11 16 16 C 1.39926 * 119.99894 * 146.92229 * 14 13 11 17 17 N 1.30850 * 119.99977 * 0.86161 * 16 14 13 18 18 Si 1.86797 * 120.00085 * 180.86851 * 16 14 13 19 19 H 1.48498 * 109.47421 * 89.99468 * 18 16 14 20 20 H 1.48499 * 109.46964 * 209.99743 * 18 16 14 21 21 H 1.48503 * 109.46819 * 329.99511 * 18 16 14 22 22 C 1.38148 * 119.91077 * 225.42578 * 8 7 5 23 23 H 1.07998 * 120.00419 * 180.02562 * 1 2 3 24 24 H 1.08003 * 119.99635 * 0.02562 * 1 2 3 25 25 H 1.07995 * 119.99915 * 179.97438 * 2 1 3 26 26 H 1.08996 * 109.47548 * 4.99945 * 3 2 1 27 27 H 1.09004 * 109.46861 * 244.99490 * 3 2 1 28 28 H 0.97005 * 120.00164 * 359.97438 * 4 3 2 29 29 H 0.97000 * 119.99333 * 355.57455 * 7 5 4 30 30 H 1.08001 * 119.76804 * 359.97438 * 9 8 7 31 31 H 1.08001 * 119.85086 * 179.97438 * 10 9 8 32 32 H 0.96994 * 120.00382 * 180.02562 * 17 16 14 33 33 H 1.07993 * 120.14448 * 359.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 3.7790 2.4086 1.3328 6 16 3.6889 3.7453 0.2669 7 7 4.6345 2.4335 2.3740 8 6 5.5153 3.5101 2.5306 9 6 5.0519 4.8154 2.3755 10 6 5.9126 5.8881 2.5271 11 6 7.2413 5.6764 2.8346 12 9 8.0782 6.7266 2.9812 13 6 7.7227 4.3608 2.9952 14 6 9.0814 4.1339 3.3095 15 1 9.8423 4.7977 2.9265 16 6 9.4416 3.0459 4.1122 17 7 8.5218 2.2288 4.5579 18 14 11.2354 2.7599 4.5477 19 1 11.5598 3.4778 5.8065 20 1 11.4744 1.3059 4.7314 21 1 12.0981 3.2688 3.4513 22 6 6.8426 3.2757 2.8336 23 1 -0.5401 -0.9353 0.0004 24 1 -0.5400 0.9354 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3586 2.1316 0.0896 27 1 2.6214 1.4025 -0.9314 28 1 3.0446 0.5747 1.7356 29 1 4.6398 1.7053 3.0148 30 1 4.0138 4.9908 2.1345 31 1 5.5430 6.8955 2.4043 32 1 8.7714 1.4748 5.1146 33 1 7.2018 2.2640 2.9503 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200296029.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:33 Heat of formation + Delta-G solvation = -1.592615 kcal Electronic energy + Delta-G solvation = -18624.624334 eV Core-core repulsion = 15497.659014 eV Total energy + Delta-G solvation = -3126.965321 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.074 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.21710 -40.77550 -38.99013 -36.85850 -35.39217 -33.96191 -31.66442 -30.09617 -27.34347 -27.11565 -24.91711 -23.30360 -22.66664 -21.15305 -19.68572 -19.35347 -18.28110 -17.99050 -17.18195 -16.72281 -16.67704 -16.30763 -15.98084 -15.87535 -15.01633 -14.80659 -14.46897 -14.28029 -13.91553 -13.53998 -13.36697 -13.24632 -12.83238 -12.61003 -12.35026 -12.23038 -12.06464 -12.03101 -11.52657 -11.14829 -10.75079 -10.34228 -9.50388 -9.16608 -8.90218 -8.58324 -8.16146 -6.41743 0.10143 0.72201 0.93063 0.93112 1.13732 1.39558 1.49686 1.51728 1.76786 2.22637 2.63927 2.71505 3.44162 3.77326 4.02463 4.13979 4.30088 4.54695 4.67342 4.69785 4.73528 4.92589 4.96070 5.01872 5.24917 5.33969 5.49706 5.62607 5.71491 5.74289 5.81931 5.98727 5.99491 6.19392 6.41846 6.53380 6.80853 6.86697 8.34720 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.022308 B = 0.004513 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.847962 B = 6202.983323 C = 7244.478967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.189 4.189 3 C 0.154 3.846 4 N -0.657 5.657 5 C 0.577 3.423 6 S -0.715 6.715 7 N -0.605 5.605 8 C 0.121 3.879 9 C -0.138 4.138 10 C -0.131 4.131 11 C -0.034 4.034 12 F -0.167 7.167 13 C 0.055 3.945 14 C -0.496 4.496 15 H 0.067 0.933 16 C 0.039 3.961 17 N -0.833 5.833 18 Si 0.984 3.016 19 H -0.266 1.266 20 H -0.260 1.260 21 H -0.265 1.265 22 C -0.136 4.136 23 H 0.125 0.875 24 H 0.102 0.898 25 H 0.131 0.869 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.417 0.583 29 H 0.420 0.580 30 H 0.136 0.864 31 H 0.127 0.873 32 H 0.289 0.711 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.005 -10.735 -1.906 16.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.207 4.207 3 C 0.032 3.968 4 N -0.287 5.287 5 C 0.214 3.786 6 S -0.588 6.588 7 N -0.229 5.229 8 C 0.028 3.972 9 C -0.160 4.160 10 C -0.151 4.151 11 C -0.055 4.055 12 F -0.146 7.146 13 C 0.052 3.948 14 C -0.526 4.526 15 H 0.085 0.915 16 C -0.174 4.174 17 N -0.460 5.460 18 Si 0.806 3.194 19 H -0.191 1.191 20 H -0.184 1.184 21 H -0.190 1.190 22 C -0.158 4.158 23 H 0.143 0.857 24 H 0.120 0.880 25 H 0.149 0.851 26 H 0.099 0.901 27 H 0.098 0.902 28 H 0.256 0.744 29 H 0.260 0.740 30 H 0.154 0.846 31 H 0.145 0.855 32 H 0.100 0.900 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.141 -10.047 -2.575 15.968 hybrid contribution 1.130 -0.903 1.206 1.884 sum -11.011 -10.951 -1.369 15.589 Atomic orbital electron populations 1.24232 0.95418 1.03571 0.95268 1.22913 0.96482 0.96886 1.04439 1.20801 0.90849 0.97550 0.87630 1.44940 1.37451 1.15451 1.30853 1.21814 0.81357 0.89951 0.85480 1.93488 1.84907 1.31132 1.49297 1.42006 1.33438 1.23265 1.24209 1.17329 0.88620 0.86107 1.05125 1.20736 1.00695 0.89962 1.04600 1.20612 0.91328 0.99736 1.03409 1.18419 0.88434 0.83845 1.14759 1.91247 1.72328 1.56491 1.94534 1.17656 0.95051 0.89325 0.92814 1.19542 0.92633 1.11160 1.29301 0.91502 1.26547 1.03990 0.93421 0.93474 1.69705 1.36124 1.12776 1.27409 0.85154 0.76529 0.78566 0.79185 1.19094 1.18411 1.18955 1.21099 0.90036 0.99846 1.04826 0.85728 0.87996 0.85116 0.90083 0.90184 0.74357 0.73986 0.84606 0.85463 0.90014 0.84944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 14.32 67.78 0.97 -0.45 16 2 C -0.19 -2.21 9.63 25.64 0.25 -1.97 16 3 C 0.15 2.89 5.57 85.63 0.48 3.37 16 4 N -0.66 -13.43 5.55 -353.91 -1.97 -15.40 16 5 C 0.58 17.95 7.85 179.05 1.40 19.36 16 6 S -0.71 -29.31 24.79 -56.49 -1.40 -30.71 16 7 N -0.60 -19.57 5.32 -190.09 -1.01 -20.58 16 8 C 0.12 5.19 5.93 38.09 0.23 5.42 16 9 C -0.14 -6.12 7.87 22.58 0.18 -5.94 16 10 C -0.13 -6.10 10.00 22.25 0.22 -5.88 16 11 C -0.03 -1.78 7.31 22.90 0.17 -1.61 16 12 F -0.17 -8.75 16.80 44.97 0.76 -7.99 16 13 C 0.06 2.98 5.55 -21.26 -0.12 2.86 16 14 C -0.50 -27.07 8.72 23.43 0.20 -26.86 16 15 H 0.07 3.70 7.81 -2.91 -0.02 3.67 16 16 C 0.04 1.90 5.40 85.25 0.46 2.36 16 17 N -0.83 -40.26 10.63 21.82 0.23 -40.03 16 18 Si 0.98 37.98 29.56 68.60 2.03 40.01 16 19 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 20 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 21 H -0.27 -10.32 7.11 99.48 0.71 -9.62 16 22 C -0.14 -6.64 8.57 22.83 0.20 -6.45 16 23 H 0.12 0.74 8.06 -2.91 -0.02 0.71 16 24 H 0.10 1.02 7.84 -2.91 -0.02 1.00 16 25 H 0.13 1.16 8.06 -2.91 -0.02 1.14 16 26 H 0.08 1.71 7.64 -2.39 -0.02 1.70 16 27 H 0.08 1.79 7.99 -2.38 -0.02 1.77 16 28 H 0.42 5.56 8.48 -92.70 -0.79 4.77 16 29 H 0.42 10.56 8.84 -92.71 -0.82 9.74 16 30 H 0.14 5.89 6.05 -8.91 -0.05 5.84 16 31 H 0.13 5.31 8.06 -2.91 -0.02 5.29 16 32 H 0.29 12.51 8.30 -92.71 -0.77 11.74 16 33 H 0.13 6.52 6.15 -2.91 -0.02 6.50 16 Total: -1.00 -66.92 303.95 2.79 -64.13 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: -0.48 Total: 26.36 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: 4.63 Total: -15.79 kcal Atomic # 7 Polarization: -73.27 SS G_CDS: -2.74 Total: -76.01 kcal Atomic # 9 Polarization: -8.75 SS G_CDS: 0.76 Total: -7.99 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 2.03 Total: 40.01 kcal Atomic # 16 Polarization: -29.31 SS G_CDS: -1.40 Total: -30.71 kcal Total: -66.92 2.79 -64.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200296029.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.535 kcal (2) G-P(sol) polarization free energy of solvation -66.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds