Wall clock time and date at job start Tue Mar 31 2020 01:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30844 * 1 3 3 Si 1.86800 * 120.00070 * 2 1 4 4 H 1.48504 * 109.47434 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47387 * 299.99987 * 3 2 1 6 6 H 1.48505 * 109.47192 * 60.00369 * 3 2 1 7 7 C 1.39924 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99890 * 197.41003 * 7 2 1 9 9 C 1.41290 * 119.99773 * 17.41628 * 7 2 1 10 10 C 1.40635 * 120.23416 * 25.72153 * 9 7 2 11 11 C 1.38140 * 119.71658 * 180.02562 * 10 9 7 12 12 N 1.39973 * 119.91637 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00165 * 138.16643 * 12 11 10 14 14 S 1.71199 * 119.99901 * 354.34732 * 13 12 11 15 15 N 1.34777 * 120.00023 * 174.35799 * 13 12 11 16 16 C 1.46500 * 119.99879 * 179.97438 * 15 13 12 17 17 C 1.53000 * 117.49640 * 223.74311 * 16 15 13 18 18 C 1.53000 * 117.49701 * 155.08431 * 16 15 13 19 19 C 1.39391 * 120.17432 * 359.97438 * 11 10 9 20 20 C 1.38367 * 120.46417 * 0.25842 * 19 11 10 21 21 C 1.38008 * 120.28944 * 359.48221 * 20 19 11 22 22 F 1.35098 * 120.09011 * 180.23191 * 21 20 19 23 23 H 0.97000 * 120.00408 * 0.02562 * 1 2 3 24 24 H 1.08008 * 120.14135 * 0.04438 * 10 9 7 25 25 H 0.97006 * 119.99847 * 318.16089 * 12 11 10 26 26 H 0.97003 * 119.99683 * 359.97438 * 15 13 12 27 27 H 1.08999 * 115.55263 * 9.41891 * 16 15 13 28 28 H 1.08999 * 117.50432 * 0.02562 * 17 16 15 29 29 H 1.09000 * 117.49466 * 145.02694 * 17 16 15 30 30 H 1.09002 * 117.50105 * 214.98316 * 18 16 15 31 31 H 1.09000 * 117.49697 * 359.97438 * 18 16 15 32 32 H 1.07997 * 119.76310 * 179.97438 * 19 11 10 33 33 H 1.08001 * 119.85013 * 179.74558 * 20 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.7025 1.3464 0.0006 5 1 1.8838 2.3965 -1.2125 6 1 1.8838 2.3964 1.2126 7 6 2.0081 -1.2118 -0.0005 8 1 3.0510 -1.2333 0.2793 9 6 1.3502 -2.4071 -0.3673 10 6 0.2309 -2.3671 -1.2178 11 6 -0.4046 -3.5423 -1.5692 12 7 -1.5186 -3.5074 -2.4158 13 6 -1.6504 -4.4248 -3.3944 14 16 -0.3888 -5.5422 -3.6957 15 7 -2.7752 -4.4623 -4.1360 16 6 -2.9181 -5.4591 -5.2000 17 6 -3.4929 -4.9874 -6.5372 18 6 -4.3377 -5.8605 -5.6059 19 6 0.0614 -4.7630 -1.0836 20 6 1.1591 -4.8105 -0.2425 21 6 1.8117 -3.6487 0.1165 22 9 2.8859 -3.7001 0.9342 23 1 -0.4851 0.8400 -0.0004 24 1 -0.1302 -1.4217 -1.5950 25 1 -2.1959 -2.8230 -2.2982 26 1 -3.4900 -3.8293 -3.9651 27 1 -2.1496 -6.2315 -5.2269 28 1 -3.7644 -3.9355 -6.6254 29 1 -3.1028 -5.4499 -7.4438 30 1 -4.5029 -6.8969 -5.9001 31 1 -5.1651 -5.3833 -5.0809 32 1 -0.4406 -5.6777 -1.3622 33 1 1.5092 -5.7614 0.1312 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200634087.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:32 Heat of formation + Delta-G solvation = 21.613097 kcal Electronic energy + Delta-G solvation = -18749.616740 eV Core-core repulsion = 15623.657695 eV Total energy + Delta-G solvation = -3125.959045 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.074 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -47.23937 -39.46820 -38.07106 -36.12974 -33.91373 -32.82227 -29.85947 -28.13735 -25.46206 -23.95052 -22.67916 -22.52643 -21.55153 -20.61183 -18.41883 -17.97538 -16.81041 -16.10354 -15.84624 -15.37112 -14.95575 -14.74539 -14.54007 -14.02186 -13.90056 -13.14155 -12.90224 -12.68218 -12.14832 -11.91251 -11.84275 -11.61961 -11.46118 -11.16514 -10.90366 -10.75936 -10.70492 -10.50122 -10.26351 -9.66152 -9.35858 -9.03275 -7.74788 -7.53279 -7.16346 -6.91941 -6.49971 -4.45522 1.46152 2.20654 2.63851 2.71766 2.79801 3.02045 3.08716 3.12369 3.63741 3.74360 3.85990 4.45992 4.49305 4.66876 4.76456 5.32661 5.34240 5.53699 5.66393 5.78090 5.92082 6.00815 6.21187 6.43325 6.52317 6.78965 6.84804 6.93238 7.07362 7.36042 7.49420 7.61964 7.80333 7.85047 8.02064 8.41884 8.65679 8.72600 10.03970 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.021430 B = 0.004771 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.261932 B = 5867.685678 C = 6844.680262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.078 3.922 3 Si 0.911 3.089 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.454 4.454 8 H 0.085 0.915 9 C 0.090 3.910 10 C -0.139 4.139 11 C 0.118 3.882 12 N -0.610 5.610 13 C 0.561 3.439 14 S -0.628 6.628 15 N -0.668 5.668 16 C 0.084 3.916 17 C -0.189 4.189 18 C -0.188 4.188 19 C -0.155 4.155 20 C -0.120 4.120 21 C -0.015 4.015 22 F -0.161 7.161 23 H 0.280 0.720 24 H 0.128 0.872 25 H 0.400 0.600 26 H 0.395 0.605 27 H 0.167 0.833 28 H 0.095 0.905 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.121 0.879 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.420 -3.125 -7.810 13.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.140 4.140 3 Si 0.735 3.265 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.483 4.483 8 H 0.103 0.897 9 C 0.086 3.914 10 C -0.161 4.161 11 C 0.026 3.974 12 N -0.231 5.231 13 C 0.203 3.797 14 S -0.500 6.500 15 N -0.298 5.298 16 C -0.023 4.023 17 C -0.228 4.228 18 C -0.227 4.227 19 C -0.177 4.177 20 C -0.140 4.140 21 C -0.035 4.035 22 F -0.140 7.140 23 H 0.091 0.909 24 H 0.145 0.855 25 H 0.237 0.763 26 H 0.231 0.769 27 H 0.185 0.815 28 H 0.113 0.887 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.113 0.887 32 H 0.139 0.861 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.668 -3.778 -7.974 13.089 hybrid contribution -0.990 2.137 0.350 2.381 sum -10.658 -1.641 -7.625 13.207 Atomic orbital electron populations 1.69795 1.07633 1.29260 1.35931 1.25862 0.94759 1.01422 0.91913 0.86200 0.81255 0.80474 0.78547 1.18135 1.19684 1.19876 1.19491 0.98402 0.90703 1.39728 0.89666 1.17270 0.92012 0.91184 0.90901 1.20853 0.98307 0.95510 1.01467 1.17351 0.89565 0.95552 0.94901 1.42429 1.24250 1.28166 1.28285 1.22327 0.88520 0.88184 0.80646 1.93257 1.34150 1.40664 1.81908 1.44200 1.16007 1.35277 1.34297 1.22215 0.98709 0.94769 0.86604 1.23439 1.03935 1.00424 0.95017 1.23419 0.94192 1.01554 1.03499 1.20271 1.00253 0.96005 1.01157 1.20325 0.97330 0.95949 1.00387 1.17971 0.90829 0.94826 0.99918 1.91280 1.54169 1.97306 1.71225 0.90889 0.85463 0.76271 0.76909 0.81546 0.88681 0.87494 0.87415 0.88699 0.86079 0.87404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.30 11.01 55.55 0.61 -18.69 16 2 C 0.08 1.87 5.14 -17.34 -0.09 1.79 16 3 Si 0.91 18.24 29.59 -169.99 -5.03 13.21 16 4 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.45 -11.92 8.77 -37.79 -0.33 -12.25 16 8 H 0.09 2.24 7.75 -52.49 -0.41 1.83 16 9 C 0.09 2.36 5.56 -106.78 -0.59 1.77 16 10 C -0.14 -3.36 8.59 -38.71 -0.33 -3.69 16 11 C 0.12 2.55 5.90 -83.75 -0.49 2.05 16 12 N -0.61 -10.40 5.32 -11.44 -0.06 -10.46 16 13 C 0.56 9.25 7.74 -86.92 -0.67 8.58 16 14 S -0.63 -12.94 24.39 -107.50 -2.62 -15.56 16 15 N -0.67 -7.87 5.57 -55.52 -0.31 -8.17 16 16 C 0.08 0.90 6.26 -67.93 -0.43 0.47 16 17 C -0.19 -1.55 10.46 -26.69 -0.28 -1.83 16 18 C -0.19 -1.43 10.46 -26.69 -0.28 -1.71 16 19 C -0.15 -3.45 7.86 -39.10 -0.31 -3.76 16 20 C -0.12 -2.77 10.00 -39.62 -0.40 -3.16 16 21 C -0.01 -0.37 7.31 -38.62 -0.28 -0.65 16 22 F -0.16 -4.07 16.72 2.25 0.04 -4.03 16 23 H 0.28 6.10 8.30 -40.82 -0.34 5.76 16 24 H 0.13 3.08 6.24 -52.48 -0.33 2.76 16 25 H 0.40 5.53 8.84 -40.82 -0.36 5.17 16 26 H 0.39 3.43 8.85 -40.82 -0.36 3.06 16 27 H 0.17 2.17 6.43 -51.93 -0.33 1.84 16 28 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.12 2.64 6.25 -49.64 -0.31 2.33 16 33 H 0.11 2.25 8.06 -52.49 -0.42 1.82 16 LS Contribution 301.25 15.07 4.54 4.54 Total: -1.00 -29.84 301.25 -10.66 -40.50 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -3.35 Total: 11.07 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -4.48 Total: -12.40 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.24 Total: -37.33 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.04 Total: -4.03 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.21 kcal Atomic # 16 Polarization: -12.94 SS G_CDS: -2.62 Total: -15.56 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.84 -10.66 -40.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200634087.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.113 kcal (2) G-P(sol) polarization free energy of solvation -29.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds