Wall clock time and date at job start Tue Mar 31 2020 01:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30844 * 1 3 3 Si 1.86800 * 120.00070 * 2 1 4 4 H 1.48504 * 109.47434 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47387 * 299.99987 * 3 2 1 6 6 H 1.48505 * 109.47192 * 60.00369 * 3 2 1 7 7 C 1.39924 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99890 * 197.41003 * 7 2 1 9 9 C 1.41290 * 119.99773 * 17.41628 * 7 2 1 10 10 C 1.40635 * 120.23416 * 25.72153 * 9 7 2 11 11 C 1.38140 * 119.71658 * 180.02562 * 10 9 7 12 12 N 1.39973 * 119.91637 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00165 * 138.16643 * 12 11 10 14 14 S 1.71199 * 119.99901 * 354.34732 * 13 12 11 15 15 N 1.34777 * 120.00023 * 174.35799 * 13 12 11 16 16 C 1.46500 * 119.99879 * 179.97438 * 15 13 12 17 17 C 1.53000 * 117.49640 * 223.74311 * 16 15 13 18 18 C 1.53000 * 117.49701 * 155.08431 * 16 15 13 19 19 C 1.39391 * 120.17432 * 359.97438 * 11 10 9 20 20 C 1.38367 * 120.46417 * 0.25842 * 19 11 10 21 21 C 1.38008 * 120.28944 * 359.48221 * 20 19 11 22 22 F 1.35098 * 120.09011 * 180.23191 * 21 20 19 23 23 H 0.97000 * 120.00408 * 0.02562 * 1 2 3 24 24 H 1.08008 * 120.14135 * 0.04438 * 10 9 7 25 25 H 0.97006 * 119.99847 * 318.16089 * 12 11 10 26 26 H 0.97003 * 119.99683 * 359.97438 * 15 13 12 27 27 H 1.08999 * 115.55263 * 9.41891 * 16 15 13 28 28 H 1.08999 * 117.50432 * 0.02562 * 17 16 15 29 29 H 1.09000 * 117.49466 * 145.02694 * 17 16 15 30 30 H 1.09002 * 117.50105 * 214.98316 * 18 16 15 31 31 H 1.09000 * 117.49697 * 359.97438 * 18 16 15 32 32 H 1.07997 * 119.76310 * 179.97438 * 19 11 10 33 33 H 1.08001 * 119.85013 * 179.74558 * 20 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.7025 1.3464 0.0006 5 1 1.8838 2.3965 -1.2125 6 1 1.8838 2.3964 1.2126 7 6 2.0081 -1.2118 -0.0005 8 1 3.0510 -1.2333 0.2793 9 6 1.3502 -2.4071 -0.3673 10 6 0.2309 -2.3671 -1.2178 11 6 -0.4046 -3.5423 -1.5692 12 7 -1.5186 -3.5074 -2.4158 13 6 -1.6504 -4.4248 -3.3944 14 16 -0.3888 -5.5422 -3.6957 15 7 -2.7752 -4.4623 -4.1360 16 6 -2.9181 -5.4591 -5.2000 17 6 -3.4929 -4.9874 -6.5372 18 6 -4.3377 -5.8605 -5.6059 19 6 0.0614 -4.7630 -1.0836 20 6 1.1591 -4.8105 -0.2425 21 6 1.8117 -3.6487 0.1165 22 9 2.8859 -3.7001 0.9342 23 1 -0.4851 0.8400 -0.0004 24 1 -0.1302 -1.4217 -1.5950 25 1 -2.1959 -2.8230 -2.2982 26 1 -3.4900 -3.8293 -3.9651 27 1 -2.1496 -6.2315 -5.2269 28 1 -3.7644 -3.9355 -6.6254 29 1 -3.1028 -5.4499 -7.4438 30 1 -4.5029 -6.8969 -5.9001 31 1 -5.1651 -5.3833 -5.0809 32 1 -0.4406 -5.6777 -1.3622 33 1 1.5092 -5.7614 0.1312 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200634087.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:32 Heat of formation + Delta-G solvation = 4.871744 kcal Electronic energy + Delta-G solvation = -18750.342700 eV Core-core repulsion = 15623.657695 eV Total energy + Delta-G solvation = -3126.685005 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.074 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.19098 -40.85913 -39.36843 -37.54694 -35.61327 -34.16039 -31.72347 -29.83373 -27.32946 -25.35557 -23.73880 -23.32348 -23.19807 -22.24315 -19.74133 -19.65279 -18.22974 -17.99266 -17.38198 -16.81869 -16.43740 -16.37785 -15.96206 -15.45706 -15.33022 -14.80335 -14.46399 -13.92282 -13.75865 -13.58129 -13.40304 -13.07554 -12.79259 -12.51408 -12.43609 -12.28919 -12.06527 -11.90695 -11.51797 -11.46669 -11.11963 -10.28418 -9.60670 -9.11120 -8.87502 -8.69115 -8.17405 -6.38848 0.02039 0.76601 0.89998 0.97680 1.38915 1.45144 1.49284 1.53224 2.20296 2.50475 2.63012 2.91749 3.46375 3.71093 4.00282 4.04110 4.08349 4.27532 4.54602 4.67507 4.74900 4.77065 4.92855 4.98828 5.03432 5.19555 5.22852 5.44493 5.48864 5.70839 5.79193 5.92596 5.96217 6.17438 6.39003 6.50794 6.75936 6.83575 8.25124 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.021430 B = 0.004771 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.261932 B = 5867.685678 C = 6844.680262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.045 3.955 3 Si 0.980 3.020 4 H -0.266 1.266 5 H -0.258 1.258 6 H -0.262 1.262 7 C -0.494 4.494 8 H 0.069 0.931 9 C 0.065 3.935 10 C -0.151 4.151 11 C 0.135 3.865 12 N -0.606 5.606 13 C 0.583 3.417 14 S -0.712 6.712 15 N -0.633 5.633 16 C 0.042 3.958 17 C -0.174 4.174 18 C -0.159 4.159 19 C -0.154 4.154 20 C -0.119 4.119 21 C -0.050 4.050 22 F -0.168 7.168 23 H 0.293 0.707 24 H 0.125 0.875 25 H 0.420 0.580 26 H 0.416 0.584 27 H 0.141 0.859 28 H 0.106 0.894 29 H 0.114 0.886 30 H 0.120 0.880 31 H 0.113 0.887 32 H 0.129 0.871 33 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.076 -2.128 -9.141 16.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.171 4.171 3 Si 0.801 3.199 4 H -0.190 1.190 5 H -0.182 1.182 6 H -0.187 1.187 7 C -0.523 4.523 8 H 0.088 0.912 9 C 0.061 3.939 10 C -0.173 4.173 11 C 0.042 3.958 12 N -0.229 5.229 13 C 0.220 3.780 14 S -0.585 6.585 15 N -0.261 5.261 16 C -0.064 4.064 17 C -0.213 4.213 18 C -0.197 4.197 19 C -0.176 4.176 20 C -0.139 4.139 21 C -0.071 4.071 22 F -0.148 7.148 23 H 0.104 0.896 24 H 0.142 0.858 25 H 0.260 0.740 26 H 0.256 0.744 27 H 0.158 0.842 28 H 0.125 0.875 29 H 0.132 0.868 30 H 0.138 0.862 31 H 0.131 0.869 32 H 0.147 0.853 33 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.423 -2.787 -9.350 15.796 hybrid contribution -0.364 1.757 0.649 1.908 sum -12.787 -1.030 -8.701 15.501 Atomic orbital electron populations 1.69784 1.08499 1.30891 1.34954 1.26577 0.95630 1.03919 0.90941 0.85185 0.79247 0.76208 0.79308 1.19020 1.18233 1.18692 1.19620 0.98151 0.92294 1.42208 0.91233 1.17623 0.93058 0.91601 0.91587 1.20787 0.98446 0.96151 1.01953 1.17235 0.89870 0.94481 0.94199 1.42059 1.23669 1.29108 1.28097 1.21765 0.88747 0.86709 0.80729 1.93468 1.37441 1.43807 1.83831 1.44182 1.14436 1.34875 1.32638 1.22319 1.00845 0.95083 0.88128 1.23538 1.02614 1.01385 0.93772 1.23542 0.92184 1.02473 1.01533 1.20443 1.00026 0.96536 1.00588 1.20568 0.97184 0.96101 1.00039 1.18238 0.91753 0.95641 1.01431 1.91238 1.54590 1.97367 1.71575 0.89608 0.85776 0.74023 0.74366 0.84161 0.87530 0.86764 0.86157 0.86858 0.85335 0.85540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.02 11.01 21.82 0.24 -38.78 16 2 C 0.05 2.20 5.14 85.25 0.44 2.63 16 3 Si 0.98 37.15 29.59 68.60 2.03 39.18 16 4 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 6 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 7 C -0.49 -26.82 8.77 23.43 0.21 -26.62 16 8 H 0.07 3.85 7.75 -2.91 -0.02 3.83 16 9 C 0.07 3.52 5.56 -21.26 -0.12 3.40 16 10 C -0.15 -7.39 8.59 22.83 0.20 -7.19 16 11 C 0.13 5.82 5.90 38.10 0.22 6.04 16 12 N -0.61 -19.72 5.32 -190.09 -1.01 -20.73 16 13 C 0.58 18.35 7.74 179.05 1.39 19.74 16 14 S -0.71 -29.60 24.39 -56.49 -1.38 -30.98 16 15 N -0.63 -13.16 5.57 -329.57 -1.84 -15.00 16 16 C 0.04 0.80 6.26 44.99 0.28 1.08 16 17 C -0.17 -2.24 10.46 30.62 0.32 -1.92 16 18 C -0.16 -1.78 10.46 30.62 0.32 -1.46 16 19 C -0.15 -6.89 7.86 22.58 0.18 -6.71 16 20 C -0.12 -5.59 10.00 22.25 0.22 -5.37 16 21 C -0.05 -2.63 7.31 22.90 0.17 -2.46 16 22 F -0.17 -8.91 16.72 44.97 0.75 -8.16 16 23 H 0.29 12.38 8.30 -92.71 -0.77 11.61 16 24 H 0.12 6.04 6.24 -2.91 -0.02 6.03 16 25 H 0.42 10.57 8.84 -92.70 -0.82 9.75 16 26 H 0.42 5.53 8.85 -92.71 -0.82 4.71 16 27 H 0.14 3.59 6.43 -2.39 -0.02 3.57 16 28 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.13 5.60 6.25 -4.73 -0.03 5.57 16 33 H 0.13 5.32 8.06 -2.91 -0.02 5.30 16 Total: -1.00 -67.43 301.25 2.14 -65.28 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: -0.48 Total: 28.01 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: 3.82 Total: -18.83 kcal Atomic # 7 Polarization: -71.90 SS G_CDS: -2.61 Total: -74.51 kcal Atomic # 9 Polarization: -8.91 SS G_CDS: 0.75 Total: -8.16 kcal Atomic # 14 Polarization: 37.15 SS G_CDS: 2.03 Total: 39.18 kcal Atomic # 16 Polarization: -29.60 SS G_CDS: -1.38 Total: -30.98 kcal Total: -67.43 2.14 -65.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200634087.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.156 kcal (2) G-P(sol) polarization free energy of solvation -67.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds