Wall clock time and date at job start Tue Mar 31 2020 01:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37970 * 120.08035 * 2 1 4 4 C 1.38338 * 120.15004 * 180.25842 * 3 2 1 5 5 C 1.38387 * 120.30572 * 359.47927 * 4 3 2 6 6 S 1.76199 * 119.92267 * 180.25828 * 5 4 3 7 7 O 1.42106 * 106.40138 * 203.53599 * 6 5 4 8 8 O 1.42093 * 106.40566 * 336.45971 * 6 5 4 9 9 N 1.65601 * 107.21913 * 90.00349 * 6 5 4 10 10 C 1.46502 * 120.00232 * 64.99330 * 9 6 5 11 11 C 1.50700 * 109.47138 * 165.00302 * 10 9 6 12 12 H 1.07994 * 120.00052 * 359.97438 * 11 10 9 13 13 C 1.37881 * 120.00019 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99837 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99979 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47183 * 89.99624 * 15 13 11 17 17 H 1.48500 * 109.46898 * 209.99673 * 15 13 11 18 18 H 1.48498 * 109.47014 * 329.99140 * 15 13 11 19 19 C 1.37926 * 120.15098 * 0.23762 * 5 4 3 20 20 C 1.39616 * 120.07431 * 179.71580 * 2 1 3 21 21 C 1.43205 * 120.15110 * 359.97438 * 20 2 1 22 22 N 3.48507 * 80.49139 * 179.70410 * 2 1 3 23 23 H 1.08996 * 109.47224 * 270.28511 * 1 2 3 24 24 H 1.09004 * 109.46791 * 30.27876 * 1 2 3 25 25 H 1.08997 * 109.47411 * 150.28043 * 1 2 3 26 26 H 1.08000 * 119.92178 * 0.02562 * 3 2 1 27 27 H 1.08002 * 119.84938 * 179.76457 * 4 3 2 28 28 H 0.96998 * 120.00415 * 245.00117 * 9 6 5 29 29 H 1.09001 * 109.47509 * 285.00530 * 10 9 6 30 30 H 1.08999 * 109.46913 * 45.00549 * 10 9 6 31 31 H 0.96993 * 119.99777 * 180.02562 * 14 13 11 32 32 H 1.08006 * 120.07539 * 180.02562 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1939 0.0000 4 6 3.5819 1.1956 -0.0054 5 6 4.2817 0.0017 0.0000 6 16 6.0436 0.0157 0.0000 7 8 6.4548 -1.2334 -0.5387 8 8 6.4350 1.2660 -0.5501 9 7 6.5338 0.0267 1.5817 10 6 6.2475 -1.1216 2.4454 11 6 7.0928 -1.0370 3.6901 12 1 7.7753 -0.2109 3.8242 13 6 6.9956 -2.0149 4.6572 14 7 6.1648 -3.0213 4.4936 15 14 8.0429 -1.9098 6.2004 16 1 7.3093 -1.1519 7.2458 17 1 8.3347 -3.2793 6.6949 18 1 9.3172 -1.2146 5.8874 19 6 3.6031 -1.1991 0.0059 20 6 2.2066 -1.2082 0.0060 21 6 1.4955 -2.4512 0.0127 22 7 0.9313 -3.4371 0.0178 23 1 -0.3633 0.0051 1.0276 24 1 -0.3633 0.8875 -0.5182 25 1 -0.3634 -0.8924 -0.5094 26 1 1.6586 2.1292 0.0004 27 1 4.1183 2.1330 -0.0092 28 1 7.0104 0.7934 1.9365 29 1 5.1930 -1.1149 2.7212 30 1 6.4777 -2.0438 1.9119 31 1 6.0961 -3.7090 5.1741 32 1 4.1505 -2.1301 0.0106 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201289521.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:36 Heat of formation + Delta-G solvation = -29.075513 kcal Electronic energy + Delta-G solvation = -19014.433978 eV Core-core repulsion = 15873.904120 eV Total energy + Delta-G solvation = -3140.529858 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.80522 -36.83555 -36.45411 -35.44132 -34.69989 -33.28031 -32.20208 -31.54041 -27.69844 -26.79727 -24.07867 -22.55608 -22.24086 -20.01435 -18.41521 -17.44274 -16.58591 -16.26303 -15.99523 -15.42826 -15.24863 -14.58741 -14.54460 -14.15373 -13.55650 -13.28632 -13.25268 -12.93064 -12.73984 -12.66785 -12.31569 -12.19243 -12.13672 -11.87226 -11.75334 -11.63645 -11.46680 -10.98460 -10.80102 -10.67140 -10.16802 -9.48559 -9.30616 -9.16513 -8.96348 -8.29921 -6.21725 -4.26826 0.42763 0.80005 0.94514 2.60928 2.68594 3.23075 3.30160 3.32788 3.50043 3.67986 3.74372 4.15251 4.31431 4.41948 4.48418 4.68855 4.92741 5.12389 5.15841 5.25665 5.27917 5.38935 5.62361 5.68561 5.83608 5.93520 6.07235 6.35227 6.51603 7.21152 7.26920 7.41660 7.72085 7.75660 8.11592 8.77228 9.38646 10.88519 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.015771 B = 0.005734 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.934344 B = 4881.656919 C = 5829.607536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.010 3.990 3 C -0.146 4.146 4 C 0.013 3.987 5 C -0.678 4.678 6 S 2.691 3.309 7 O -0.958 6.958 8 O -0.976 6.976 9 N -1.100 6.100 10 C 0.244 3.756 11 C -0.531 4.531 12 H 0.067 0.933 13 C 0.062 3.938 14 N -0.890 5.890 15 Si 0.904 3.096 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.272 1.272 19 C 0.041 3.959 20 C -0.054 4.054 21 C 0.259 3.741 22 N -0.413 5.413 23 H 0.086 0.914 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.141 0.859 27 H 0.148 0.852 28 H 0.412 0.588 29 H 0.023 0.977 30 H 0.040 0.960 31 H 0.266 0.734 32 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.920 9.560 -7.953 15.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.007 3.993 3 C -0.164 4.164 4 C -0.006 4.006 5 C -0.762 4.762 6 S 2.777 3.223 7 O -0.948 6.948 8 O -0.966 6.966 9 N -0.863 5.863 10 C 0.121 3.879 11 C -0.570 4.570 12 H 0.085 0.915 13 C -0.142 4.142 14 N -0.527 5.527 15 Si 0.731 3.269 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.196 1.196 19 C 0.019 3.981 20 C -0.059 4.059 21 C -0.056 4.056 22 N -0.088 5.088 23 H 0.104 0.896 24 H 0.100 0.900 25 H 0.089 0.911 26 H 0.159 0.841 27 H 0.166 0.834 28 H 0.247 0.753 29 H 0.040 0.960 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -9.471 7.668 -8.671 14.956 hybrid contribution 0.179 0.582 1.467 1.588 sum -9.292 8.249 -7.204 14.363 Atomic orbital electron populations 1.21026 0.90116 1.03742 1.03688 1.20187 0.96369 0.91695 0.91039 1.21063 0.94131 0.97518 1.03730 1.21151 0.94484 0.97014 0.87996 1.31289 1.28912 0.98538 1.17438 1.01952 0.73373 0.73473 0.73470 1.93585 1.79585 1.44109 1.77500 1.93535 1.81458 1.43989 1.77580 1.55448 1.71013 1.29718 1.30146 1.19130 0.96716 0.82343 0.89738 1.21171 1.23760 1.09501 1.02605 0.91512 1.24975 0.95570 0.94949 0.98680 1.69929 1.36116 1.11601 1.35090 0.86406 0.80508 0.77484 0.82494 1.20516 1.21036 1.19649 1.21036 0.92283 0.98068 0.86697 1.15914 0.92229 0.86857 1.10850 1.25453 0.93545 0.92776 0.93837 1.81240 1.08660 1.10200 1.08734 0.89564 0.90048 0.91099 0.84083 0.83445 0.75326 0.95959 0.94240 0.92398 0.82917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.02 9.61 36.01 0.35 -0.67 16 2 C 0.01 0.11 5.91 -104.21 -0.62 -0.51 16 3 C -0.15 -1.42 9.69 -39.64 -0.38 -1.80 16 4 C 0.01 0.16 9.52 -39.49 -0.38 -0.22 16 5 C -0.68 -9.82 5.94 -39.64 -0.24 -10.06 16 6 S 2.69 45.56 5.74 -107.50 -0.62 44.94 16 7 O -0.96 -19.20 16.74 -57.17 -0.96 -20.16 16 8 O -0.98 -16.96 17.27 -57.17 -0.99 -17.95 16 9 N -1.10 -20.52 5.99 -11.65 -0.07 -20.59 16 10 C 0.24 5.71 5.98 -5.19 -0.03 5.68 16 11 C -0.53 -13.70 9.27 -34.44 -0.32 -14.02 16 12 H 0.07 1.64 7.65 -52.49 -0.40 1.24 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -24.91 13.29 55.43 0.74 -24.18 16 15 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 16 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 19 C 0.04 0.60 9.23 -39.17 -0.36 0.24 16 20 C -0.05 -0.72 5.73 -106.93 -0.61 -1.34 16 21 C 0.26 3.76 13.80 -22.47 -0.31 3.45 16 22 N -0.41 -6.69 18.54 41.84 0.78 -5.91 16 23 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.08 0.45 8.09 -51.93 -0.42 0.03 16 25 H 0.07 0.60 7.09 -51.93 -0.37 0.23 16 26 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 27 H 0.15 1.45 7.61 -52.49 -0.40 1.05 16 28 H 0.41 6.92 8.54 -34.47 -0.29 6.63 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.04 1.00 7.75 -51.93 -0.40 0.60 16 31 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.15 2.32 7.61 -52.48 -0.40 1.92 16 LS Contribution 305.54 15.07 4.60 4.60 Total: -1.00 -32.17 305.54 -7.62 -39.79 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -3.09 Total: 1.80 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -3.00 Total: -17.69 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: 1.44 Total: -50.68 kcal Atomic # 8 Polarization: -36.17 SS G_CDS: -1.94 Total: -38.11 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 45.56 SS G_CDS: -0.62 Total: 44.94 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.17 -7.62 -39.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201289521.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.714 kcal (2) G-P(sol) polarization free energy of solvation -32.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds