Wall clock time and date at job start Tue Mar 31 2020 01:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37970 * 120.08035 * 2 1 4 4 C 1.38338 * 120.15004 * 180.25842 * 3 2 1 5 5 C 1.38387 * 120.30572 * 359.47927 * 4 3 2 6 6 S 1.76199 * 119.92267 * 180.25828 * 5 4 3 7 7 O 1.42106 * 106.40138 * 203.53599 * 6 5 4 8 8 O 1.42093 * 106.40566 * 336.45971 * 6 5 4 9 9 N 1.65601 * 107.21913 * 90.00349 * 6 5 4 10 10 C 1.46502 * 120.00232 * 64.99330 * 9 6 5 11 11 C 1.50700 * 109.47138 * 165.00302 * 10 9 6 12 12 H 1.07994 * 120.00052 * 359.97438 * 11 10 9 13 13 C 1.37881 * 120.00019 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99837 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99979 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47183 * 89.99624 * 15 13 11 17 17 H 1.48500 * 109.46898 * 209.99673 * 15 13 11 18 18 H 1.48498 * 109.47014 * 329.99140 * 15 13 11 19 19 C 1.37926 * 120.15098 * 0.23762 * 5 4 3 20 20 C 1.39616 * 120.07431 * 179.71580 * 2 1 3 21 21 C 1.43205 * 120.15110 * 359.97438 * 20 2 1 22 22 N 3.48507 * 80.49139 * 179.70410 * 2 1 3 23 23 H 1.08996 * 109.47224 * 270.28511 * 1 2 3 24 24 H 1.09004 * 109.46791 * 30.27876 * 1 2 3 25 25 H 1.08997 * 109.47411 * 150.28043 * 1 2 3 26 26 H 1.08000 * 119.92178 * 0.02562 * 3 2 1 27 27 H 1.08002 * 119.84938 * 179.76457 * 4 3 2 28 28 H 0.96998 * 120.00415 * 245.00117 * 9 6 5 29 29 H 1.09001 * 109.47509 * 285.00530 * 10 9 6 30 30 H 1.08999 * 109.46913 * 45.00549 * 10 9 6 31 31 H 0.96993 * 119.99777 * 180.02562 * 14 13 11 32 32 H 1.08006 * 120.07539 * 180.02562 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1939 0.0000 4 6 3.5819 1.1956 -0.0054 5 6 4.2817 0.0017 0.0000 6 16 6.0436 0.0157 0.0000 7 8 6.4548 -1.2334 -0.5387 8 8 6.4350 1.2660 -0.5501 9 7 6.5338 0.0267 1.5817 10 6 6.2475 -1.1216 2.4454 11 6 7.0928 -1.0370 3.6901 12 1 7.7753 -0.2109 3.8242 13 6 6.9956 -2.0149 4.6572 14 7 6.1648 -3.0213 4.4936 15 14 8.0429 -1.9098 6.2004 16 1 7.3093 -1.1519 7.2458 17 1 8.3347 -3.2793 6.6949 18 1 9.3172 -1.2146 5.8874 19 6 3.6031 -1.1991 0.0059 20 6 2.2066 -1.2082 0.0060 21 6 1.4955 -2.4512 0.0127 22 7 0.9313 -3.4371 0.0178 23 1 -0.3633 0.0051 1.0276 24 1 -0.3633 0.8875 -0.5182 25 1 -0.3634 -0.8924 -0.5094 26 1 1.6586 2.1292 0.0004 27 1 4.1183 2.1330 -0.0092 28 1 7.0104 0.7934 1.9365 29 1 5.1930 -1.1149 2.7212 30 1 6.4777 -2.0438 1.9119 31 1 6.0961 -3.7090 5.1741 32 1 4.1505 -2.1301 0.0106 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201289521.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:36 Heat of formation + Delta-G solvation = -52.069096 kcal Electronic energy + Delta-G solvation = -19015.431055 eV Core-core repulsion = 15873.904120 eV Total energy + Delta-G solvation = -3141.526935 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.78261 -38.28823 -37.64019 -36.91345 -36.45966 -34.21207 -34.09224 -32.53564 -28.71820 -28.52790 -25.10621 -24.45734 -23.19098 -21.20639 -19.83926 -19.06445 -17.81534 -17.64164 -17.40164 -16.89095 -16.42725 -16.18535 -15.55650 -15.18971 -15.06736 -14.55173 -14.37690 -14.19898 -14.07971 -14.04428 -13.58049 -13.36317 -13.25733 -13.20537 -13.17571 -13.09388 -12.74721 -12.52343 -12.44963 -12.08300 -11.86588 -11.40284 -10.83942 -10.25021 -10.16673 -10.09153 -8.24036 -6.35830 -0.62813 -0.44266 -0.15185 1.44813 1.45916 1.47324 1.57985 1.64036 2.15796 2.43171 2.52818 2.65473 2.82066 3.11769 3.40471 3.57574 3.68955 3.94984 4.22137 4.36654 4.53516 4.62362 4.68669 4.72640 4.83491 4.96830 5.13141 5.21598 5.29394 5.32482 5.63054 5.75370 5.99546 6.26985 6.34857 6.79504 7.34247 8.86784 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.015771 B = 0.005734 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.934344 B = 4881.656919 C = 5829.607536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.023 3.977 3 C -0.129 4.129 4 C 0.014 3.986 5 C -0.687 4.687 6 S 2.707 3.293 7 O -0.997 6.997 8 O -0.976 6.976 9 N -1.100 6.100 10 C 0.256 3.744 11 C -0.547 4.547 12 H 0.077 0.923 13 C 0.007 3.993 14 N -0.928 5.928 15 Si 0.972 3.028 16 H -0.270 1.270 17 H -0.287 1.287 18 H -0.262 1.262 19 C 0.020 3.980 20 C -0.070 4.070 21 C 0.275 3.725 22 N -0.450 5.450 23 H 0.097 0.903 24 H 0.116 0.884 25 H 0.061 0.939 26 H 0.191 0.809 27 H 0.172 0.828 28 H 0.421 0.579 29 H 0.015 0.985 30 H 0.010 0.990 31 H 0.267 0.733 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.056 12.405 -7.595 17.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.020 3.980 3 C -0.147 4.147 4 C -0.006 4.006 5 C -0.776 4.776 6 S 2.799 3.201 7 O -0.987 6.987 8 O -0.967 6.967 9 N -0.862 5.862 10 C 0.132 3.868 11 C -0.586 4.586 12 H 0.095 0.905 13 C -0.193 4.193 14 N -0.567 5.567 15 Si 0.796 3.204 16 H -0.195 1.195 17 H -0.213 1.213 18 H -0.186 1.186 19 C -0.002 4.002 20 C -0.074 4.074 21 C -0.039 4.039 22 N -0.125 5.125 23 H 0.115 0.885 24 H 0.134 0.866 25 H 0.080 0.920 26 H 0.208 0.792 27 H 0.189 0.811 28 H 0.256 0.744 29 H 0.033 0.967 30 H 0.028 0.972 31 H 0.076 0.924 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.548 10.540 -8.318 17.074 hybrid contribution 0.437 -0.222 1.268 1.359 sum -10.110 10.318 -7.050 16.074 Atomic orbital electron populations 1.21157 0.87684 1.05042 1.04698 1.20627 0.98049 0.90782 0.88526 1.21582 0.93198 0.98921 1.01006 1.21572 0.95782 0.96533 0.86705 1.30718 1.26608 0.99834 1.20453 1.01127 0.74173 0.72482 0.72347 1.93534 1.81285 1.45933 1.77995 1.93524 1.82341 1.43657 1.77161 1.55238 1.72087 1.28782 1.30113 1.18685 0.95906 0.82782 0.89452 1.21641 1.23929 1.09700 1.03313 0.90451 1.25888 0.96757 0.94592 1.02018 1.70061 1.37883 1.12499 1.36258 0.85346 0.79098 0.77344 0.78618 1.19518 1.21281 1.18642 1.20939 0.93242 0.97683 0.88340 1.16023 0.91543 0.87507 1.12350 1.25678 0.92777 0.92698 0.92762 1.81239 1.10019 1.11029 1.10253 0.88487 0.86560 0.92022 0.79186 0.81096 0.74357 0.96721 0.97199 0.92425 0.84947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.55 9.61 71.24 0.68 -0.86 16 2 C 0.02 0.42 5.91 -19.60 -0.12 0.30 16 3 C -0.13 -1.92 9.69 22.23 0.22 -1.70 16 4 C 0.01 0.28 9.52 22.33 0.21 0.49 16 5 C -0.69 -19.60 5.94 22.23 0.13 -19.46 16 6 S 2.71 92.79 5.74 -56.49 -0.32 92.46 16 7 O -1.00 -41.91 16.74 -128.00 -2.14 -44.06 16 8 O -0.98 -33.02 17.27 -128.00 -2.21 -35.23 16 9 N -1.10 -41.53 5.99 -190.79 -1.14 -42.68 16 10 C 0.26 12.39 5.98 85.63 0.51 12.90 16 11 C -0.55 -28.42 9.27 25.60 0.24 -28.18 16 12 H 0.08 3.75 7.65 -2.91 -0.02 3.73 16 13 C 0.01 0.39 5.46 84.66 0.46 0.85 16 14 N -0.93 -53.16 13.29 21.45 0.28 -52.87 16 15 Si 0.97 41.65 29.54 68.60 2.03 43.68 16 16 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 17 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 19 C 0.02 0.61 9.23 22.54 0.21 0.82 16 20 C -0.07 -1.82 5.73 -21.36 -0.12 -1.94 16 21 C 0.28 8.11 13.80 88.33 1.22 9.33 16 22 N -0.45 -14.90 18.54 19.01 0.35 -14.55 16 23 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.12 0.63 8.09 -2.38 -0.02 0.61 16 25 H 0.06 0.90 7.09 -2.39 -0.02 0.88 16 26 H 0.19 1.05 8.06 -2.91 -0.02 1.03 16 27 H 0.17 2.68 7.61 -2.91 -0.02 2.65 16 28 H 0.42 14.00 8.54 -96.75 -0.83 13.18 16 29 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.01 0.54 7.75 -2.39 -0.02 0.52 16 31 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 32 H 0.13 4.44 7.61 -2.91 -0.02 4.42 16 Total: -1.00 -71.11 305.54 0.83 -70.28 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: 0.34 Total: 10.43 kcal Atomic # 6 Polarization: -31.11 SS G_CDS: 3.64 Total: -27.46 kcal Atomic # 7 Polarization: -109.60 SS G_CDS: -0.51 Total: -110.10 kcal Atomic # 8 Polarization: -74.93 SS G_CDS: -4.35 Total: -79.29 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Atomic # 16 Polarization: 92.79 SS G_CDS: -0.32 Total: 92.46 kcal Total: -71.11 0.83 -70.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201289521.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.210 kcal (2) G-P(sol) polarization free energy of solvation -71.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds