Wall clock time and date at job start Tue Mar 31 2020 01:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37977 * 120.07632 * 2 1 4 4 C 1.38336 * 120.15011 * 180.25645 * 3 2 1 5 5 C 1.38379 * 120.30837 * 359.48360 * 4 3 2 6 6 S 1.76200 * 119.92741 * 180.25350 * 5 4 3 7 7 O 1.42096 * 106.40525 * 203.54411 * 6 5 4 8 8 O 1.42100 * 106.40253 * 336.46373 * 6 5 4 9 9 N 1.65607 * 107.21888 * 90.00038 * 6 5 4 10 10 C 1.46499 * 120.00187 * 270.00436 * 9 6 5 11 11 C 1.36938 * 119.99439 * 89.99698 * 9 6 5 12 12 H 1.07998 * 119.99852 * 22.32562 * 11 9 6 13 13 C 1.38811 * 119.99657 * 202.31907 * 11 9 6 14 14 N 1.31618 * 120.00272 * 11.14527 * 13 11 9 15 15 Si 1.86804 * 119.99965 * 191.14282 * 13 11 9 16 16 H 1.48499 * 109.47004 * 89.99944 * 15 13 11 17 17 H 1.48497 * 109.47079 * 210.00077 * 15 13 11 18 18 H 1.48506 * 109.46828 * 330.00204 * 15 13 11 19 19 C 1.37922 * 120.15226 * 0.23603 * 5 4 3 20 20 C 1.39612 * 120.08166 * 179.72074 * 2 1 3 21 21 C 1.43203 * 120.15012 * 359.97438 * 20 2 1 22 22 N 3.48493 * 80.49825 * 179.70615 * 2 1 3 23 23 H 1.09000 * 109.47201 * 270.27218 * 1 2 3 24 24 H 1.08991 * 109.47446 * 30.28010 * 1 2 3 25 25 H 1.08998 * 109.46758 * 150.28008 * 1 2 3 26 26 H 1.07997 * 119.92000 * 0.02562 * 3 2 1 27 27 H 1.08003 * 119.84710 * 179.76363 * 4 3 2 28 28 H 1.09005 * 109.47105 * 94.21633 * 10 9 6 29 29 H 1.08995 * 109.46942 * 214.21718 * 10 9 6 30 30 H 1.08996 * 109.46960 * 334.21926 * 10 9 6 31 31 H 0.96996 * 120.00386 * 180.02562 * 14 13 11 32 32 H 1.08001 * 120.07815 * 179.97438 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5818 1.1958 -0.0054 5 6 4.2817 0.0021 0.0000 6 16 6.0436 0.0161 -0.0001 7 8 6.4549 -1.2328 -0.5390 8 8 6.4349 1.2665 -0.5502 9 7 6.5339 0.0271 1.5817 10 6 6.7406 1.3007 2.2756 11 6 6.7460 -1.1542 2.2409 12 1 6.9505 -2.0553 1.6819 13 6 6.6981 -1.1934 3.6277 14 7 6.2374 -0.1598 4.2998 15 14 7.2876 -2.7132 4.5400 16 1 8.7354 -2.5791 4.8415 17 1 6.5288 -2.8543 5.8087 18 1 7.0670 -3.9143 3.6950 19 6 3.6033 -1.1988 0.0059 20 6 2.2067 -1.2081 0.0059 21 6 1.4957 -2.4511 0.0125 22 7 0.9317 -3.4371 0.0176 23 1 -0.3633 0.0049 1.0276 24 1 -0.3634 0.8874 -0.5181 25 1 -0.3633 -0.8925 -0.5095 26 1 1.6584 2.1292 0.0004 27 1 4.1181 2.1332 -0.0092 28 1 5.8326 1.5727 2.8139 29 1 7.5651 1.2002 2.9814 30 1 6.9778 2.0767 1.5479 31 1 6.2044 -0.1870 5.2688 32 1 4.1507 -2.1297 0.0096 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201310683.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:39 Heat of formation + Delta-G solvation = -13.900697 kcal Electronic energy + Delta-G solvation = -19593.704879 eV Core-core repulsion = 16453.833050 eV Total energy + Delta-G solvation = -3139.871829 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.34391 -36.24567 -35.92440 -35.76890 -34.51629 -32.81216 -31.58705 -31.11415 -27.23499 -26.55346 -23.61529 -23.58581 -21.74962 -19.29534 -18.33496 -16.99406 -16.45994 -16.05563 -15.74295 -14.93779 -14.72527 -14.29194 -14.27357 -13.77995 -13.30440 -13.08370 -12.97609 -12.83364 -12.63110 -12.40305 -12.04434 -11.81598 -11.69409 -11.44734 -11.22185 -11.13245 -11.07807 -10.77623 -10.69007 -10.32882 -10.23256 -9.91673 -9.38157 -8.80414 -8.74234 -8.20459 -6.66645 -4.13849 0.88317 1.31659 1.66784 2.79903 3.03559 3.06842 3.11501 3.15755 3.85504 3.95410 4.03735 4.39661 4.68617 4.77850 4.84855 5.01768 5.17702 5.45463 5.47351 5.55812 5.66904 5.81179 5.99643 6.10564 6.29946 6.32751 6.45752 6.54852 6.78273 6.99490 7.01198 7.14879 7.35163 7.61161 8.17060 8.53451 9.00208 10.28625 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.015880 B = 0.007244 C = 0.006059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.817157 B = 3864.363229 C = 4619.854987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.012 4.012 3 C -0.148 4.148 4 C 0.002 3.998 5 C -0.660 4.660 6 S 2.528 3.472 7 O -0.983 6.983 8 O -0.998 6.998 9 N -0.802 5.802 10 C 0.120 3.880 11 C -0.243 4.243 12 H 0.118 0.882 13 C 0.033 3.967 14 N -0.832 5.832 15 Si 0.927 3.073 16 H -0.271 1.271 17 H -0.280 1.280 18 H -0.262 1.262 19 C 0.030 3.970 20 C -0.065 4.065 21 C 0.268 3.732 22 N -0.432 5.432 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.132 0.868 27 H 0.139 0.861 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.046 0.954 31 H 0.276 0.724 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.904 4.057 -1.775 7.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.015 4.015 3 C -0.167 4.167 4 C -0.018 4.018 5 C -0.737 4.737 6 S 2.624 3.376 7 O -0.972 6.972 8 O -0.988 6.988 9 N -0.626 5.626 10 C -0.026 4.026 11 C -0.391 4.391 12 H 0.136 0.864 13 C -0.180 4.180 14 N -0.471 5.471 15 Si 0.752 3.248 16 H -0.196 1.196 17 H -0.205 1.205 18 H -0.186 1.186 19 C 0.009 3.991 20 C -0.069 4.069 21 C -0.047 4.047 22 N -0.108 5.108 23 H 0.098 0.902 24 H 0.095 0.905 25 H 0.084 0.916 26 H 0.150 0.850 27 H 0.157 0.843 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.448 2.738 -2.594 7.470 hybrid contribution -0.517 -0.273 0.906 1.078 sum -6.965 2.464 -1.689 7.579 Atomic orbital electron populations 1.20937 0.90782 1.03187 1.03091 1.19975 0.95763 0.91829 0.93932 1.21029 0.94534 0.97026 1.04073 1.21113 0.93879 0.97527 0.89270 1.32631 1.33314 0.96917 1.10819 1.11805 0.74866 0.72874 0.78018 1.93359 1.81080 1.43420 1.79378 1.93341 1.82121 1.43806 1.79522 1.54161 1.64909 1.10569 1.32959 1.21361 1.02696 0.82879 0.95661 1.20082 1.39120 0.89809 0.90088 0.86436 1.25776 0.96102 0.98637 0.97521 1.70090 1.38721 1.29486 1.08842 0.85880 0.79074 0.80942 0.78860 1.19641 1.20505 1.18619 1.20919 0.91367 0.98364 0.88484 1.16031 0.92682 0.86449 1.11777 1.25648 0.93053 0.92784 0.93210 1.81185 1.09156 1.10659 1.09773 0.90219 0.90509 0.91588 0.84969 0.84333 0.92777 0.90612 0.93573 0.91323 0.83913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 9.61 36.00 0.35 -0.97 16 2 C -0.01 -0.17 5.91 -104.21 -0.62 -0.79 16 3 C -0.15 -2.04 9.69 -39.64 -0.38 -2.42 16 4 C 0.00 0.03 9.52 -39.49 -0.38 -0.35 16 5 C -0.66 -12.65 5.97 -39.65 -0.24 -12.88 16 6 S 2.53 55.40 5.65 -107.50 -0.61 54.79 16 7 O -0.98 -23.77 16.07 -57.17 -0.92 -24.69 16 8 O -1.00 -22.86 15.83 -57.17 -0.91 -23.76 16 9 N -0.80 -18.12 3.31 -66.69 -0.22 -18.34 16 10 C 0.12 2.51 8.92 59.85 0.53 3.04 16 11 C -0.24 -5.71 9.44 -15.06 -0.14 -5.85 16 12 H 0.12 2.76 7.16 -52.49 -0.38 2.38 16 13 C 0.03 0.74 5.13 -17.43 -0.09 0.65 16 14 N -0.83 -19.14 10.57 55.49 0.59 -18.56 16 15 Si 0.93 17.99 29.57 -169.99 -5.03 12.96 16 16 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 17 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 18 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 19 C 0.03 0.56 9.23 -39.17 -0.36 0.20 16 20 C -0.07 -1.07 5.73 -106.93 -0.61 -1.68 16 21 C 0.27 4.45 13.80 -22.47 -0.31 4.14 16 22 N -0.43 -7.63 18.54 41.83 0.78 -6.86 16 23 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.08 0.64 8.09 -51.93 -0.42 0.22 16 25 H 0.07 0.73 7.09 -51.93 -0.37 0.36 16 26 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 27 H 0.14 2.11 7.61 -52.48 -0.40 1.71 16 28 H 0.05 1.13 7.42 -51.93 -0.39 0.74 16 29 H 0.08 1.61 7.18 -51.93 -0.37 1.24 16 30 H 0.05 0.89 6.93 -51.93 -0.36 0.53 16 31 H 0.28 5.98 8.31 -40.82 -0.34 5.64 16 32 H 0.14 2.64 7.61 -52.49 -0.40 2.24 16 LS Contribution 297.40 15.07 4.48 4.48 Total: -1.00 -27.88 297.40 -7.14 -35.03 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -3.06 Total: 1.87 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -2.25 Total: -16.92 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: 1.14 Total: -43.76 kcal Atomic # 8 Polarization: -46.63 SS G_CDS: -1.82 Total: -48.46 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Atomic # 16 Polarization: 55.40 SS G_CDS: -0.61 Total: 54.79 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.88 -7.14 -35.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201310683.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.127 kcal (2) G-P(sol) polarization free energy of solvation -27.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds