Wall clock time and date at job start Tue Mar 31 2020 01:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37977 * 120.07632 * 2 1 4 4 C 1.38336 * 120.15011 * 180.25645 * 3 2 1 5 5 C 1.38379 * 120.30837 * 359.48360 * 4 3 2 6 6 S 1.76200 * 119.92741 * 180.25350 * 5 4 3 7 7 O 1.42096 * 106.40525 * 203.54411 * 6 5 4 8 8 O 1.42100 * 106.40253 * 336.46373 * 6 5 4 9 9 N 1.65607 * 107.21888 * 90.00038 * 6 5 4 10 10 C 1.46499 * 120.00187 * 270.00436 * 9 6 5 11 11 C 1.36938 * 119.99439 * 89.99698 * 9 6 5 12 12 H 1.07998 * 119.99852 * 22.32562 * 11 9 6 13 13 C 1.38811 * 119.99657 * 202.31907 * 11 9 6 14 14 N 1.31618 * 120.00272 * 11.14527 * 13 11 9 15 15 Si 1.86804 * 119.99965 * 191.14282 * 13 11 9 16 16 H 1.48499 * 109.47004 * 89.99944 * 15 13 11 17 17 H 1.48497 * 109.47079 * 210.00077 * 15 13 11 18 18 H 1.48506 * 109.46828 * 330.00204 * 15 13 11 19 19 C 1.37922 * 120.15226 * 0.23603 * 5 4 3 20 20 C 1.39612 * 120.08166 * 179.72074 * 2 1 3 21 21 C 1.43203 * 120.15012 * 359.97438 * 20 2 1 22 22 N 3.48493 * 80.49825 * 179.70615 * 2 1 3 23 23 H 1.09000 * 109.47201 * 270.27218 * 1 2 3 24 24 H 1.08991 * 109.47446 * 30.28010 * 1 2 3 25 25 H 1.08998 * 109.46758 * 150.28008 * 1 2 3 26 26 H 1.07997 * 119.92000 * 0.02562 * 3 2 1 27 27 H 1.08003 * 119.84710 * 179.76363 * 4 3 2 28 28 H 1.09005 * 109.47105 * 94.21633 * 10 9 6 29 29 H 1.08995 * 109.46942 * 214.21718 * 10 9 6 30 30 H 1.08996 * 109.46960 * 334.21926 * 10 9 6 31 31 H 0.96996 * 120.00386 * 180.02562 * 14 13 11 32 32 H 1.08001 * 120.07815 * 179.97438 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5818 1.1958 -0.0054 5 6 4.2817 0.0021 0.0000 6 16 6.0436 0.0161 -0.0001 7 8 6.4549 -1.2328 -0.5390 8 8 6.4349 1.2665 -0.5502 9 7 6.5339 0.0271 1.5817 10 6 6.7406 1.3007 2.2756 11 6 6.7460 -1.1542 2.2409 12 1 6.9505 -2.0553 1.6819 13 6 6.6981 -1.1934 3.6277 14 7 6.2374 -0.1598 4.2998 15 14 7.2876 -2.7132 4.5400 16 1 8.7354 -2.5791 4.8415 17 1 6.5288 -2.8543 5.8087 18 1 7.0670 -3.9143 3.6950 19 6 3.6033 -1.1988 0.0059 20 6 2.2067 -1.2081 0.0059 21 6 1.4957 -2.4511 0.0125 22 7 0.9317 -3.4371 0.0176 23 1 -0.3633 0.0049 1.0276 24 1 -0.3634 0.8874 -0.5181 25 1 -0.3633 -0.8925 -0.5095 26 1 1.6584 2.1292 0.0004 27 1 4.1181 2.1332 -0.0092 28 1 5.8326 1.5727 2.8139 29 1 7.5651 1.2002 2.9814 30 1 6.9778 2.0767 1.5479 31 1 6.2044 -0.1870 5.2688 32 1 4.1507 -2.1297 0.0096 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201310683.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:38 Heat of formation + Delta-G solvation = -30.937445 kcal Electronic energy + Delta-G solvation = -19594.443647 eV Core-core repulsion = 16453.833050 eV Total energy + Delta-G solvation = -3140.610597 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.62593 -37.85222 -37.58049 -37.45429 -36.43475 -34.01579 -33.27952 -32.41491 -28.35793 -28.24345 -25.32900 -24.92808 -23.00576 -20.79934 -20.00437 -18.75213 -18.20187 -17.51896 -17.11469 -16.40708 -16.26148 -15.97230 -15.48288 -15.07625 -14.96971 -14.49323 -14.30476 -14.16731 -13.98444 -13.69194 -13.32287 -13.20334 -13.07145 -13.01200 -12.96848 -12.77122 -12.68390 -12.35195 -12.33681 -12.10244 -11.91462 -11.52997 -11.05903 -10.09892 -10.05425 -9.88658 -8.32353 -5.92118 -0.42302 -0.14706 0.06109 1.46246 1.50390 1.52492 1.60930 1.71864 2.28132 2.54954 2.70078 2.76833 2.97554 3.24974 3.66876 3.68302 3.82728 4.10088 4.37991 4.50906 4.59435 4.63914 4.70628 4.81353 4.96240 5.10277 5.12422 5.18881 5.27530 5.31582 5.43762 5.69061 5.74801 6.28436 6.45545 6.84384 7.29016 8.64683 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.015880 B = 0.007244 C = 0.006059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.817157 B = 3864.363229 C = 4619.854987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.006 3.994 3 C -0.134 4.134 4 C -0.003 4.003 5 C -0.685 4.685 6 S 2.575 3.425 7 O -1.009 7.009 8 O -1.007 7.007 9 N -0.825 5.825 10 C 0.128 3.872 11 C -0.287 4.287 12 H 0.104 0.896 13 C 0.005 3.995 14 N -0.861 5.861 15 Si 0.977 3.023 16 H -0.267 1.267 17 H -0.276 1.276 18 H -0.267 1.267 19 C 0.015 3.985 20 C -0.074 4.074 21 C 0.281 3.719 22 N -0.452 5.452 23 H 0.094 0.906 24 H 0.111 0.889 25 H 0.061 0.939 26 H 0.182 0.818 27 H 0.152 0.848 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.277 0.723 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.285 5.477 -2.338 10.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.003 3.997 3 C -0.152 4.152 4 C -0.023 4.023 5 C -0.768 4.768 6 S 2.674 3.326 7 O -1.000 7.000 8 O -0.997 6.997 9 N -0.651 5.651 10 C -0.017 4.017 11 C -0.431 4.431 12 H 0.122 0.878 13 C -0.205 4.205 14 N -0.501 5.501 15 Si 0.801 3.199 16 H -0.192 1.192 17 H -0.201 1.201 18 H -0.191 1.191 19 C -0.007 4.007 20 C -0.078 4.078 21 C -0.034 4.034 22 N -0.128 5.128 23 H 0.113 0.887 24 H 0.129 0.871 25 H 0.080 0.920 26 H 0.199 0.801 27 H 0.170 0.830 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.755 4.130 -3.089 10.161 hybrid contribution 0.013 -0.598 0.800 0.998 sum -8.741 3.532 -2.290 9.702 Atomic orbital electron populations 1.21079 0.87725 1.04735 1.04444 1.20495 0.97861 0.90779 0.90570 1.21505 0.93270 0.98845 1.01546 1.21418 0.95590 0.96721 0.88572 1.31880 1.30874 0.98785 1.15215 1.08699 0.75386 0.71953 0.76552 1.93343 1.82264 1.44764 1.79592 1.93344 1.82941 1.43997 1.79378 1.53717 1.68292 1.10896 1.32241 1.21274 1.02194 0.82573 0.95692 1.19940 1.42916 0.89489 0.90735 0.87839 1.26243 0.95986 1.00650 0.97580 1.70133 1.40459 1.30612 1.08878 0.85145 0.78773 0.78275 0.77724 1.19214 1.20143 1.19121 1.20857 0.92672 0.97684 0.89496 1.16085 0.91769 0.87442 1.12537 1.25628 0.92563 0.92575 0.92589 1.81199 1.10004 1.10989 1.10566 0.88731 0.87079 0.91991 0.80109 0.83027 0.93062 0.91694 0.92273 0.91254 0.85268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.01 9.61 71.23 0.68 -1.33 16 2 C 0.01 0.14 5.91 -19.60 -0.12 0.02 16 3 C -0.13 -3.03 9.69 22.23 0.22 -2.81 16 4 C 0.00 -0.10 9.52 22.33 0.21 0.11 16 5 C -0.69 -25.64 5.97 22.23 0.13 -25.51 16 6 S 2.58 113.57 5.65 -56.49 -0.32 113.25 16 7 O -1.01 -50.02 16.07 -128.00 -2.06 -52.07 16 8 O -1.01 -45.32 15.83 -128.00 -2.03 -47.34 16 9 N -0.83 -38.22 3.31 -364.91 -1.21 -39.43 16 10 C 0.13 5.45 8.92 127.77 1.14 6.59 16 11 C -0.29 -14.08 9.44 84.03 0.79 -13.28 16 12 H 0.10 5.17 7.16 -2.91 -0.02 5.15 16 13 C 0.00 0.22 5.13 84.86 0.44 0.65 16 14 N -0.86 -40.65 10.57 21.65 0.23 -40.42 16 15 Si 0.98 37.89 29.57 68.60 2.03 39.91 16 16 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 17 H -0.28 -10.43 7.11 99.48 0.71 -9.72 16 18 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 19 C 0.01 0.54 9.23 22.54 0.21 0.75 16 20 C -0.07 -2.29 5.73 -21.36 -0.12 -2.41 16 21 C 0.28 8.95 13.80 88.33 1.22 10.17 16 22 N -0.45 -15.46 18.54 19.00 0.35 -15.11 16 23 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.11 1.13 8.09 -2.39 -0.02 1.11 16 25 H 0.06 1.12 7.09 -2.39 -0.02 1.10 16 26 H 0.18 2.43 8.06 -2.91 -0.02 2.40 16 27 H 0.15 4.14 7.61 -2.91 -0.02 4.12 16 28 H 0.05 2.16 7.42 -2.38 -0.02 2.14 16 29 H 0.06 2.85 7.18 -2.39 -0.02 2.83 16 30 H 0.06 2.27 6.93 -2.39 -0.02 2.25 16 31 H 0.28 12.28 8.31 -92.71 -0.77 11.51 16 32 H 0.13 4.96 7.61 -2.91 -0.02 4.94 16 Total: -1.00 -61.04 297.40 2.96 -58.09 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 1.15 Total: 10.18 kcal Atomic # 6 Polarization: -31.85 SS G_CDS: 4.80 Total: -27.05 kcal Atomic # 7 Polarization: -94.33 SS G_CDS: -0.63 Total: -94.96 kcal Atomic # 8 Polarization: -95.33 SS G_CDS: -4.08 Total: -99.42 kcal Atomic # 14 Polarization: 37.89 SS G_CDS: 2.03 Total: 39.91 kcal Atomic # 16 Polarization: 113.57 SS G_CDS: -0.32 Total: 113.25 kcal Total: -61.04 2.96 -58.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201310683.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.148 kcal (2) G-P(sol) polarization free energy of solvation -61.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds