Wall clock time and date at job start Tue Mar 31 2020 01:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.09000 * 109.47090 * 10.26048 * 3 2 1 5 5 C 1.52997 * 109.47080 * 250.26071 * 3 2 1 6 6 O 1.42904 * 109.47002 * 305.00021 * 5 3 2 7 7 C 1.35903 * 116.99893 * 180.02562 * 6 5 3 8 8 C 1.38765 * 120.04766 * 359.71879 * 7 6 5 9 9 C 1.38124 * 119.96797 * 179.74784 * 8 7 6 10 10 C 1.38270 * 120.06976 * 0.55364 * 9 8 7 11 11 C 1.38363 * 120.09532 * 359.70204 * 10 9 8 12 12 Cl 1.73601 * 119.98609 * 180.02562 * 11 10 9 13 13 C 1.38277 * 120.03178 * 0.02562 * 11 10 9 14 14 O 1.42896 * 109.46934 * 130.25856 * 3 2 1 15 15 C 1.42898 * 114.00482 * 269.99987 * 14 3 2 16 16 C 1.50693 * 109.47596 * 180.02562 * 15 14 3 17 17 H 1.08006 * 120.00063 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00555 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99660 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00412 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47123 * 89.99758 * 20 18 16 22 22 H 1.48506 * 109.47005 * 209.99703 * 20 18 16 23 23 H 1.48499 * 109.46762 * 329.99813 * 20 18 16 24 24 H 4.18736 * 15.03981 * 359.97438 * 4 2 1 25 25 H 1.09000 * 109.47459 * 65.00392 * 5 3 2 26 26 H 1.09001 * 109.46992 * 185.00549 * 5 3 2 27 27 H 1.08004 * 120.01347 * 0.03403 * 8 7 6 28 28 H 1.08002 * 119.96593 * 180.25503 * 9 8 7 29 29 H 1.08003 * 119.95238 * 179.72061 * 10 9 8 30 30 H 1.07997 * 120.03673 * 180.02562 * 13 11 10 31 31 H 1.09000 * 109.46956 * 300.00370 * 15 14 3 32 32 H 1.09004 * 109.47091 * 59.99742 * 15 14 3 33 33 H 0.96999 * 120.00359 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0098 -1.0104 -0.1831 5 6 3.1557 0.4881 1.3577 6 8 2.5853 1.7653 1.6501 7 6 2.9383 2.3435 2.8283 8 6 3.8112 1.6920 3.6880 9 6 4.1729 2.2835 4.8826 10 6 3.6572 3.5190 5.2280 11 6 2.7824 4.1688 4.3753 12 17 2.1371 5.7202 4.8115 13 6 2.4220 3.5829 3.1758 14 8 3.1219 0.8715 -1.0281 15 6 3.3159 0.2296 -2.2900 16 6 3.8168 1.2358 -3.2938 17 1 3.9711 2.2630 -2.9979 18 6 4.0771 0.8455 -4.5903 19 7 3.8887 -0.4052 -4.9508 20 14 4.6986 2.0926 -5.8344 21 1 6.1831 2.1206 -5.8079 22 1 4.2348 1.7105 -7.1924 23 1 4.1719 3.4381 -5.4917 24 1 -1.0500 -0.0011 0.0003 25 1 2.8678 -0.2241 2.1310 26 1 4.2420 0.5734 1.3286 27 1 4.2112 0.7249 3.4210 28 1 4.8556 1.7783 5.5498 29 1 3.9378 3.9778 6.1647 30 1 1.7395 4.0901 2.5100 31 1 4.0481 -0.5705 -2.1818 32 1 2.3698 -0.1879 -2.6346 33 1 4.0721 -0.6800 -5.8628 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205620257.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:20 Heat of formation + Delta-G solvation = -11.237882 kcal Electronic energy + Delta-G solvation = -18277.925072 eV Core-core repulsion = 15103.832254 eV Total energy + Delta-G solvation = -3174.092818 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.065 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.23622 -38.12742 -37.00891 -36.29462 -33.23770 -32.36812 -31.19268 -30.26627 -29.12423 -27.02304 -24.03061 -22.78400 -22.46344 -21.83426 -18.67355 -18.02635 -16.65692 -16.37976 -16.08334 -15.89799 -15.37128 -15.07470 -14.62201 -14.42333 -13.96032 -13.77221 -13.38022 -13.08703 -12.30060 -12.10077 -12.00578 -11.82243 -11.33849 -11.30776 -11.03761 -10.95461 -10.89639 -10.80715 -10.22102 -10.08317 -9.76261 -9.18083 -9.11607 -9.01496 -8.34407 -8.32110 -6.15878 -4.17912 0.97031 1.21945 1.88637 3.08372 3.19630 3.28525 3.29335 3.33865 3.40307 3.49285 4.30574 4.54508 4.62560 4.67364 4.86139 4.91723 5.00824 5.17163 5.21073 5.26257 5.44908 5.54528 5.70908 5.76647 5.99884 6.12382 6.16950 6.26043 6.41422 6.95221 7.32224 7.36445 7.73250 7.99604 8.05485 8.40093 8.93577 9.46867 10.95585 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.019336 B = 0.003501 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.720606 B = 7995.928866 C = 8587.781635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.189 4.189 3 C 0.196 3.804 4 H 0.098 0.902 5 C 0.071 3.929 6 O -0.288 6.288 7 C 0.155 3.845 8 C -0.210 4.210 9 C -0.067 4.067 10 C -0.158 4.158 11 C 0.005 3.995 12 Cl -0.068 7.068 13 C -0.148 4.148 14 O -0.367 6.367 15 C 0.190 3.810 16 C -0.516 4.516 17 H 0.068 0.932 18 C 0.058 3.942 19 N -0.898 5.898 20 Si 0.909 3.091 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.271 1.271 24 H 0.214 0.786 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.135 0.865 28 H 0.133 0.867 29 H 0.132 0.868 30 H 0.142 0.858 31 H 0.010 0.990 32 H 0.010 0.990 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.682 3.101 20.459 20.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.189 4.189 3 C 0.137 3.863 4 H 0.115 0.885 5 C -0.004 4.004 6 O -0.200 6.200 7 C 0.108 3.892 8 C -0.229 4.229 9 C -0.085 4.085 10 C -0.177 4.177 11 C -0.021 4.021 12 Cl -0.039 7.039 13 C -0.167 4.167 14 O -0.286 6.286 15 C 0.116 3.884 16 C -0.554 4.554 17 H 0.086 0.914 18 C -0.144 4.144 19 N -0.537 5.537 20 Si 0.736 3.264 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.195 1.195 24 H 0.231 0.769 25 H 0.092 0.908 26 H 0.099 0.901 27 H 0.153 0.847 28 H 0.151 0.849 29 H 0.150 0.850 30 H 0.160 0.840 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.807 3.381 20.185 20.546 hybrid contribution 0.096 0.202 -0.767 0.799 sum -1.712 3.583 19.418 19.820 Atomic orbital electron populations 1.24787 0.95770 1.01278 1.00086 1.23743 0.95063 0.99677 1.00413 1.18862 0.83651 0.95411 0.88414 0.88453 1.23060 0.98738 0.82920 0.95663 1.86285 1.66051 1.34219 1.33480 1.18895 0.92737 0.91974 0.85636 1.21422 1.02565 1.02368 0.96527 1.20863 0.97834 0.94096 0.95701 1.20890 0.99903 0.96409 1.00542 1.20543 0.98196 0.88097 0.95303 1.98371 1.85500 1.27352 1.92708 1.20243 1.04638 0.94810 0.97056 1.88112 1.84337 1.35599 1.20602 1.20398 0.95484 0.93890 0.78591 1.21020 1.44233 0.96403 0.93750 0.91373 1.24939 0.95518 0.95767 0.98144 1.69957 1.48694 1.16043 1.19025 0.86317 0.79011 0.81221 0.79873 1.20382 1.21025 1.19543 0.76918 0.90801 0.90077 0.84726 0.84899 0.85045 0.84036 0.97237 0.97241 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.33 19.25 29.55 0.57 -2.76 16 2 C -0.19 -3.50 12.39 -37.12 -0.46 -3.96 16 3 C 0.20 3.57 2.98 -29.52 -0.09 3.48 16 4 H 0.10 1.59 7.79 -51.93 -0.40 1.18 16 5 C 0.07 1.03 4.59 37.16 0.17 1.20 16 6 O -0.29 -4.77 9.57 -24.29 -0.23 -5.01 16 7 C 0.15 2.17 6.69 -39.22 -0.26 1.91 16 8 C -0.21 -2.37 9.04 -39.43 -0.36 -2.72 16 9 C -0.07 -0.64 10.04 -39.61 -0.40 -1.03 16 10 C -0.16 -1.60 9.83 -39.52 -0.39 -1.98 16 11 C 0.01 0.06 6.32 -39.52 -0.25 -0.19 16 12 Cl -0.07 -0.74 28.95 -51.86 -1.50 -2.24 16 13 C -0.15 -1.99 9.77 -39.40 -0.38 -2.38 16 14 O -0.37 -8.77 9.90 -40.08 -0.40 -9.16 16 15 C 0.19 5.12 5.48 36.00 0.20 5.32 16 16 C -0.52 -15.11 9.43 -34.44 -0.32 -15.43 16 17 H 0.07 2.00 7.81 -52.48 -0.41 1.59 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 20 Si 0.91 21.78 29.54 -169.99 -5.02 16.76 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 24 H 0.21 2.59 7.80 -54.09 -0.42 2.17 16 25 H 0.07 0.82 7.65 -51.93 -0.40 0.43 16 26 H 0.08 1.07 7.67 -51.93 -0.40 0.67 16 27 H 0.13 1.26 6.30 -52.48 -0.33 0.93 16 28 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 29 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 30 H 0.14 1.90 8.06 -52.49 -0.42 1.48 16 31 H 0.01 0.26 8.08 -51.93 -0.42 -0.15 16 32 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 317.56 15.07 4.79 4.79 Total: -1.00 -32.56 317.56 -7.31 -39.87 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: -3.61 Total: -2.18 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: -2.07 Total: -16.99 kcal Atomic # 7 Polarization: -26.57 SS G_CDS: 0.74 Total: -25.83 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.63 Total: -14.17 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.56 -7.31 -39.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205620257.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.631 kcal (2) G-P(sol) polarization free energy of solvation -32.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds