Wall clock time and date at job start Tue Mar 31 2020 01:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.09000 * 109.47090 * 10.26048 * 3 2 1 5 5 C 1.52997 * 109.47080 * 250.26071 * 3 2 1 6 6 O 1.42904 * 109.47002 * 305.00021 * 5 3 2 7 7 C 1.35903 * 116.99893 * 180.02562 * 6 5 3 8 8 C 1.38765 * 120.04766 * 359.71879 * 7 6 5 9 9 C 1.38124 * 119.96797 * 179.74784 * 8 7 6 10 10 C 1.38270 * 120.06976 * 0.55364 * 9 8 7 11 11 C 1.38363 * 120.09532 * 359.70204 * 10 9 8 12 12 Cl 1.73601 * 119.98609 * 180.02562 * 11 10 9 13 13 C 1.38277 * 120.03178 * 0.02562 * 11 10 9 14 14 O 1.42896 * 109.46934 * 130.25856 * 3 2 1 15 15 C 1.42898 * 114.00482 * 269.99987 * 14 3 2 16 16 C 1.50693 * 109.47596 * 180.02562 * 15 14 3 17 17 H 1.08006 * 120.00063 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00555 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99660 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00412 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47123 * 89.99758 * 20 18 16 22 22 H 1.48506 * 109.47005 * 209.99703 * 20 18 16 23 23 H 1.48499 * 109.46762 * 329.99813 * 20 18 16 24 24 H 4.18736 * 15.03981 * 359.97438 * 4 2 1 25 25 H 1.09000 * 109.47459 * 65.00392 * 5 3 2 26 26 H 1.09001 * 109.46992 * 185.00549 * 5 3 2 27 27 H 1.08004 * 120.01347 * 0.03403 * 8 7 6 28 28 H 1.08002 * 119.96593 * 180.25503 * 9 8 7 29 29 H 1.08003 * 119.95238 * 179.72061 * 10 9 8 30 30 H 1.07997 * 120.03673 * 180.02562 * 13 11 10 31 31 H 1.09000 * 109.46956 * 300.00370 * 15 14 3 32 32 H 1.09004 * 109.47091 * 59.99742 * 15 14 3 33 33 H 0.96999 * 120.00359 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0098 -1.0104 -0.1831 5 6 3.1557 0.4881 1.3577 6 8 2.5853 1.7653 1.6501 7 6 2.9383 2.3435 2.8283 8 6 3.8112 1.6920 3.6880 9 6 4.1729 2.2835 4.8826 10 6 3.6572 3.5190 5.2280 11 6 2.7824 4.1688 4.3753 12 17 2.1371 5.7202 4.8115 13 6 2.4220 3.5829 3.1758 14 8 3.1219 0.8715 -1.0281 15 6 3.3159 0.2296 -2.2900 16 6 3.8168 1.2358 -3.2938 17 1 3.9711 2.2630 -2.9979 18 6 4.0771 0.8455 -4.5903 19 7 3.8887 -0.4052 -4.9508 20 14 4.6986 2.0926 -5.8344 21 1 6.1831 2.1206 -5.8079 22 1 4.2348 1.7105 -7.1924 23 1 4.1719 3.4381 -5.4917 24 1 -1.0500 -0.0011 0.0003 25 1 2.8678 -0.2241 2.1310 26 1 4.2420 0.5734 1.3286 27 1 4.2112 0.7249 3.4210 28 1 4.8556 1.7783 5.5498 29 1 3.9378 3.9778 6.1647 30 1 1.7395 4.0901 2.5100 31 1 4.0481 -0.5705 -2.1818 32 1 2.3698 -0.1879 -2.6346 33 1 4.0721 -0.6800 -5.8628 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205620257.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:20 Heat of formation + Delta-G solvation = -30.378330 kcal Electronic energy + Delta-G solvation = -18278.755064 eV Core-core repulsion = 15103.832254 eV Total energy + Delta-G solvation = -3174.922810 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.065 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.23714 -39.39094 -38.35051 -37.24100 -35.15603 -34.05988 -32.13595 -31.32033 -30.35842 -29.00988 -25.24742 -24.56747 -23.68090 -22.83983 -19.82284 -19.29578 -18.65117 -17.75892 -17.08900 -17.05482 -16.82666 -16.22669 -16.09332 -16.04080 -15.38024 -14.70340 -14.49273 -14.34492 -14.10980 -13.54228 -13.25527 -12.89843 -12.79359 -12.77881 -12.68211 -12.23424 -12.15642 -11.90144 -11.83711 -11.61822 -11.26341 -11.12793 -11.06096 -10.42974 -9.89296 -9.27383 -8.34956 -6.47270 0.09824 0.33461 1.00799 1.38636 1.41242 1.52958 1.70801 1.84829 2.21639 2.34404 2.62006 2.99022 3.13126 3.35283 3.74701 3.93449 4.02055 4.10281 4.16797 4.29428 4.39388 4.40326 4.43651 4.78068 4.81027 4.99641 5.14379 5.15608 5.26477 5.33757 5.51113 5.59015 5.91176 6.34260 6.45285 6.65296 6.74379 7.24040 8.77144 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.019336 B = 0.003501 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.720606 B = 7995.928866 C = 8587.781635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.241 4.241 3 C 0.182 3.818 4 H 0.111 0.889 5 C 0.077 3.923 6 O -0.322 6.322 7 C 0.127 3.873 8 C -0.209 4.209 9 C -0.058 4.058 10 C -0.153 4.153 11 C -0.003 4.003 12 Cl -0.065 7.065 13 C -0.170 4.170 14 O -0.388 6.388 15 C 0.208 3.792 16 C -0.551 4.551 17 H 0.058 0.942 18 C 0.011 3.989 19 N -0.928 5.928 20 Si 0.981 3.019 21 H -0.264 1.264 22 H -0.273 1.273 23 H -0.269 1.269 24 H 0.252 0.748 25 H 0.111 0.889 26 H 0.091 0.909 27 H 0.154 0.846 28 H 0.172 0.828 29 H 0.158 0.842 30 H 0.127 0.873 31 H 0.001 0.999 32 H -0.016 1.016 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.942 3.262 21.823 22.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.242 4.242 3 C 0.124 3.876 4 H 0.128 0.872 5 C 0.002 3.998 6 O -0.236 6.236 7 C 0.081 3.919 8 C -0.228 4.228 9 C -0.076 4.076 10 C -0.171 4.171 11 C -0.030 4.030 12 Cl -0.036 7.036 13 C -0.190 4.190 14 O -0.308 6.308 15 C 0.133 3.867 16 C -0.589 4.589 17 H 0.077 0.923 18 C -0.188 4.188 19 N -0.567 5.567 20 Si 0.803 3.197 21 H -0.189 1.189 22 H -0.198 1.198 23 H -0.193 1.193 24 H 0.268 0.732 25 H 0.129 0.871 26 H 0.109 0.891 27 H 0.172 0.828 28 H 0.189 0.811 29 H 0.175 0.825 30 H 0.145 0.855 31 H 0.019 0.981 32 H 0.002 0.998 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.070 3.537 21.580 21.894 hybrid contribution -0.210 0.139 -1.060 1.089 sum -1.280 3.676 20.521 20.886 Atomic orbital electron populations 1.25761 0.96773 0.99160 0.97964 1.24096 0.95933 1.01701 1.02449 1.19281 0.84141 0.95562 0.88576 0.87206 1.23073 0.99016 0.83376 0.94287 1.86207 1.67110 1.35093 1.35191 1.19125 0.94505 0.92581 0.85673 1.21710 1.01534 1.03013 0.96542 1.21318 0.97358 0.93657 0.95282 1.21286 0.98506 0.96431 1.00903 1.20678 0.98761 0.88444 0.95135 1.98368 1.85567 1.27100 1.92547 1.20284 1.05433 0.95325 0.97954 1.88042 1.84985 1.37264 1.20459 1.19958 0.93601 0.93149 0.79978 1.21353 1.45720 0.96508 0.95312 0.92338 1.25901 0.95055 0.97931 0.99940 1.70051 1.48834 1.17847 1.19921 0.85221 0.78974 0.78320 0.77154 1.18918 1.19781 1.19310 0.73158 0.87143 0.89112 0.82803 0.81102 0.82476 0.85544 0.98104 0.99841 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.81 19.25 74.32 1.43 -4.38 16 2 C -0.24 -9.10 12.39 31.13 0.39 -8.71 16 3 C 0.18 6.82 2.98 28.79 0.09 6.91 16 4 H 0.11 3.69 7.79 -2.39 -0.02 3.68 16 5 C 0.08 2.21 4.59 71.98 0.33 2.54 16 6 O -0.32 -10.89 9.57 -87.82 -0.84 -11.74 16 7 C 0.13 3.55 6.69 22.50 0.15 3.70 16 8 C -0.21 -4.29 9.04 22.37 0.20 -4.09 16 9 C -0.06 -0.92 10.04 22.25 0.22 -0.70 16 10 C -0.15 -2.67 9.83 22.31 0.22 -2.45 16 11 C 0.00 -0.08 6.32 22.31 0.14 0.06 16 12 Cl -0.06 -1.36 28.95 -2.72 -0.08 -1.43 16 13 C -0.17 -4.68 9.77 22.39 0.22 -4.46 16 14 O -0.39 -19.28 9.90 -144.34 -1.43 -20.71 16 15 C 0.21 11.66 5.48 71.23 0.39 12.05 16 16 C -0.55 -33.21 9.43 25.60 0.24 -32.97 16 17 H 0.06 3.54 7.81 -2.91 -0.02 3.51 16 18 C 0.01 0.62 5.46 84.65 0.46 1.08 16 19 N -0.93 -55.43 13.29 21.45 0.28 -55.15 16 20 Si 0.98 44.64 29.54 68.60 2.03 46.67 16 21 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 24 H 0.25 5.56 7.80 -4.42 -0.03 5.52 16 25 H 0.11 2.29 7.65 -2.39 -0.02 2.27 16 26 H 0.09 2.35 7.67 -2.39 -0.02 2.33 16 27 H 0.15 2.45 6.30 -2.91 -0.02 2.43 16 28 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 29 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 30 H 0.13 3.67 8.06 -2.91 -0.02 3.65 16 31 H 0.00 0.07 8.08 -2.39 -0.02 0.05 16 32 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 33 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -72.51 317.56 5.55 -66.95 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: 1.11 Total: 6.82 kcal Atomic # 6 Polarization: -35.90 SS G_CDS: 4.48 Total: -31.42 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: 0.28 Total: -55.15 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -2.27 Total: -32.44 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.08 Total: -1.43 kcal Total: -72.51 5.55 -66.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205620257.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.576 kcal (2) G-P(sol) polarization free energy of solvation -72.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds