Wall clock time and date at job start Tue Mar 31 2020 01:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 5 5 C 1.52997 * 109.47080 * 250.26071 * 3 2 1 6 6 O 1.42901 * 109.47254 * 55.00306 * 5 3 2 7 7 C 1.35903 * 116.99946 * 180.02562 * 6 5 3 8 8 C 1.38765 * 120.04648 * 359.71812 * 7 6 5 9 9 C 1.38129 * 119.96486 * 179.75327 * 8 7 6 10 10 C 1.38270 * 120.06746 * 0.54819 * 9 8 7 11 11 C 1.38358 * 120.10073 * 359.70361 * 10 9 8 12 12 Cl 1.73604 * 119.98652 * 180.02562 * 11 10 9 13 13 C 1.38278 * 120.02997 * 0.02562 * 11 10 9 14 14 O 1.42900 * 109.47016 * 10.25934 * 3 2 1 15 15 C 1.42902 * 113.99821 * 89.99880 * 14 3 2 16 16 C 1.50700 * 109.47348 * 179.97438 * 15 14 3 17 17 H 1.08007 * 119.99474 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00205 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99866 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99678 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47493 * 60.00636 * 20 18 16 22 22 H 1.48505 * 109.46870 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47293 * 300.00154 * 20 18 16 24 24 H 4.18741 * 15.03726 * 0.02562 * 4 2 1 25 25 H 1.09000 * 109.46818 * 175.00168 * 5 3 2 26 26 H 1.09001 * 109.47096 * 295.00064 * 5 3 2 27 27 H 1.08000 * 120.01642 * 0.02669 * 8 7 6 28 28 H 1.08002 * 119.96771 * 180.25285 * 9 8 7 29 29 H 1.08003 * 119.94832 * 179.72322 * 10 9 8 30 30 H 1.07998 * 120.03639 * 180.02562 * 13 11 10 31 31 H 1.08996 * 109.47733 * 300.00182 * 15 14 3 32 32 H 1.09001 * 109.47093 * 59.99862 * 15 14 3 33 33 H 0.97004 * 119.99470 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0090 0.6649 -0.7843 5 6 3.1557 0.4881 1.3577 6 8 2.5864 -0.3123 2.3956 7 6 2.9387 -0.0086 3.6726 8 6 3.8191 1.0348 3.9209 9 6 4.1720 1.3454 5.2198 10 6 3.6578 0.6104 6.2720 11 6 2.7838 -0.4339 6.0272 12 17 2.1393 -1.3543 7.3506 13 6 2.4233 -0.7447 4.7289 14 8 3.1229 -1.3249 -0.2400 15 6 3.3167 -1.6315 -1.6222 16 6 3.8187 -3.0460 -1.7574 17 1 3.9737 -3.6505 -0.8759 18 6 4.0790 -3.5687 -3.0064 19 7 3.8897 -2.8327 -4.0798 20 14 4.7005 -5.3223 -3.1739 21 1 3.7041 -6.2582 -2.5940 22 1 4.9021 -5.6409 -4.6103 23 1 5.9901 -5.4616 -2.4508 24 1 -1.0500 -0.0001 0.0009 25 1 4.2421 0.4047 1.3891 26 1 2.8669 1.5292 1.5018 27 1 4.2247 1.6066 3.0994 28 1 4.8541 2.1601 5.4134 29 1 3.9385 0.8520 7.2865 30 1 1.7408 -1.5596 4.5378 31 1 2.3705 -1.5291 -2.1533 32 1 4.0483 -0.9445 -2.0476 33 1 4.0732 -3.2004 -4.9585 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205620265.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:22 Heat of formation + Delta-G solvation = -30.328973 kcal Electronic energy + Delta-G solvation = -18278.632104 eV Core-core repulsion = 15103.711434 eV Total energy + Delta-G solvation = -3174.920670 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.065 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.23716 -39.39060 -38.35022 -37.24085 -35.15550 -34.06013 -32.13589 -31.32047 -30.35828 -29.00875 -25.24740 -24.56631 -23.68089 -22.83964 -19.82277 -19.29556 -18.64802 -17.76015 -17.08649 -17.04995 -16.83227 -16.23008 -16.09115 -16.04092 -15.38150 -14.70240 -14.49188 -14.34322 -14.10582 -13.54172 -13.25898 -12.90387 -12.78702 -12.77013 -12.68897 -12.23354 -12.14767 -11.89948 -11.84187 -11.62347 -11.26956 -11.12518 -11.06211 -10.42969 -9.89281 -9.27399 -8.34779 -6.47206 0.09825 0.33433 1.00788 1.38695 1.43185 1.51275 1.70703 1.84800 2.21629 2.34431 2.61981 2.99200 3.13140 3.35254 3.74713 3.93420 4.02114 4.10232 4.16756 4.29439 4.39398 4.40307 4.43626 4.78070 4.81029 4.99630 5.14376 5.15634 5.26482 5.33751 5.50937 5.58998 5.91201 6.34253 6.45279 6.65251 6.74192 7.24033 8.77116 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.019339 B = 0.003501 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.472367 B = 7996.542792 C = 8587.593628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.241 4.241 3 C 0.182 3.818 4 H 0.111 0.889 5 C 0.077 3.923 6 O -0.322 6.322 7 C 0.127 3.873 8 C -0.209 4.209 9 C -0.058 4.058 10 C -0.153 4.153 11 C -0.003 4.003 12 Cl -0.065 7.065 13 C -0.170 4.170 14 O -0.388 6.388 15 C 0.208 3.792 16 C -0.553 4.553 17 H 0.059 0.941 18 C 0.011 3.989 19 N -0.928 5.928 20 Si 0.980 3.020 21 H -0.269 1.269 22 H -0.272 1.272 23 H -0.264 1.264 24 H 0.252 0.748 25 H 0.091 0.909 26 H 0.111 0.889 27 H 0.154 0.846 28 H 0.172 0.828 29 H 0.158 0.842 30 H 0.127 0.873 31 H -0.016 1.016 32 H 0.001 0.999 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.954 11.339 18.933 22.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.242 4.242 3 C 0.124 3.876 4 H 0.128 0.872 5 C 0.003 3.997 6 O -0.236 6.236 7 C 0.081 3.919 8 C -0.228 4.228 9 C -0.076 4.076 10 C -0.171 4.171 11 C -0.030 4.030 12 Cl -0.036 7.036 13 C -0.190 4.190 14 O -0.307 6.307 15 C 0.133 3.867 16 C -0.590 4.590 17 H 0.077 0.923 18 C -0.188 4.188 19 N -0.567 5.567 20 Si 0.803 3.197 21 H -0.194 1.194 22 H -0.197 1.197 23 H -0.188 1.188 24 H 0.268 0.732 25 H 0.109 0.891 26 H 0.128 0.872 27 H 0.172 0.828 28 H 0.189 0.811 29 H 0.175 0.825 30 H 0.145 0.855 31 H 0.001 0.999 32 H 0.019 0.981 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.079 10.973 18.917 21.896 hybrid contribution -0.217 -0.782 -0.724 1.088 sum -1.296 10.191 18.193 20.893 Atomic orbital electron populations 1.25760 0.96773 0.97674 0.99453 1.24095 0.95932 1.02538 1.01610 1.19282 0.84132 0.87213 0.96935 0.87209 1.23072 0.99031 0.94912 0.82734 1.86207 1.67202 1.57323 1.12865 1.19126 0.94470 0.94352 0.83942 1.21710 1.01405 0.99480 1.00204 1.21319 0.97398 0.98630 0.90270 1.21284 0.98542 0.95507 1.01791 1.20677 0.98770 0.95847 0.87727 1.98368 1.85592 1.73388 1.46231 1.20285 1.05481 1.03213 0.90006 1.88044 1.84950 1.29637 1.28112 1.19954 0.93592 0.95912 0.77204 1.21332 1.45800 0.98440 0.93437 0.92298 1.25901 0.95047 1.03335 0.94525 1.70047 1.48809 1.39026 0.98770 0.85277 0.79155 0.77666 0.77602 1.19412 1.19704 1.18822 0.73159 0.89112 0.87151 0.82810 0.81104 0.82477 0.85537 0.99854 0.98111 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.81 19.25 74.32 1.43 -4.38 16 2 C -0.24 -9.10 12.39 31.13 0.39 -8.71 16 3 C 0.18 6.82 2.98 28.79 0.09 6.91 16 4 H 0.11 3.69 7.79 -2.39 -0.02 3.68 16 5 C 0.08 2.21 4.59 71.98 0.33 2.54 16 6 O -0.32 -10.89 9.57 -87.82 -0.84 -11.73 16 7 C 0.13 3.55 6.69 22.50 0.15 3.70 16 8 C -0.21 -4.29 9.04 22.37 0.20 -4.09 16 9 C -0.06 -0.92 10.04 22.25 0.22 -0.70 16 10 C -0.15 -2.67 9.83 22.31 0.22 -2.45 16 11 C 0.00 -0.08 6.32 22.31 0.14 0.06 16 12 Cl -0.06 -1.35 28.95 -2.72 -0.08 -1.43 16 13 C -0.17 -4.67 9.77 22.39 0.22 -4.45 16 14 O -0.39 -19.27 9.90 -144.34 -1.43 -20.70 16 15 C 0.21 11.68 5.48 71.24 0.39 12.07 16 16 C -0.55 -33.27 9.43 25.60 0.24 -33.03 16 17 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 18 C 0.01 0.63 5.46 84.65 0.46 1.09 16 19 N -0.93 -55.48 13.29 21.45 0.28 -55.20 16 20 Si 0.98 44.62 29.54 68.60 2.03 46.65 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 24 H 0.25 5.56 7.80 -4.42 -0.03 5.52 16 25 H 0.09 2.35 7.65 -2.39 -0.02 2.33 16 26 H 0.11 2.29 7.67 -2.39 -0.02 2.27 16 27 H 0.15 2.46 6.30 -2.91 -0.02 2.44 16 28 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 29 H 0.16 1.92 8.06 -2.91 -0.02 1.89 16 30 H 0.13 3.67 8.06 -2.91 -0.02 3.65 16 31 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 32 H 0.00 0.07 8.08 -2.39 -0.02 0.05 16 33 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -72.46 317.56 5.55 -66.90 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: 1.11 Total: 6.96 kcal Atomic # 6 Polarization: -35.93 SS G_CDS: 4.48 Total: -31.45 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: 0.28 Total: -55.20 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -2.27 Total: -32.43 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -0.08 Total: -1.43 kcal Total: -72.46 5.55 -66.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205620265.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.576 kcal (2) G-P(sol) polarization free energy of solvation -72.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds