Wall clock time and date at job start Tue Mar 31 2020 01:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00007 * 2 1 4 4 H 1.48497 * 109.47387 * 269.99727 * 3 2 1 5 5 H 1.48498 * 109.47223 * 30.00186 * 3 2 1 6 6 H 1.48503 * 109.47208 * 149.99766 * 3 2 1 7 7 C 1.37871 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00550 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00314 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.47080 * 300.00200 * 9 7 2 11 11 C 1.53008 * 109.46819 * 59.99366 * 9 7 2 12 12 Cl 1.80300 * 109.46854 * 185.00371 * 11 9 7 13 13 O 1.42899 * 109.47338 * 179.97438 * 9 7 2 14 14 C 1.42903 * 113.99629 * 150.00083 * 13 9 7 15 15 C 1.50701 * 109.46878 * 179.97438 * 14 13 9 16 16 N 1.30108 * 124.94920 * 180.02562 * 15 14 13 17 17 C 1.35787 * 109.64195 * 179.97438 * 16 15 14 18 18 C 1.39740 * 133.60100 * 180.02562 * 17 16 15 19 19 C 1.36609 * 119.88461 * 179.97438 * 18 17 16 20 20 C 1.38779 * 120.67123 * 359.97438 * 19 18 17 21 21 C 1.37853 * 120.44635 * 359.97438 * 20 19 18 22 22 C 1.38840 * 119.69351 * 0.04695 * 21 20 19 23 23 N 1.36037 * 124.95051 * 359.72278 * 15 14 13 24 24 H 0.97000 * 126.34682 * 0.02562 * 23 15 14 25 25 H 0.97004 * 119.99626 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47264 * 305.00848 * 11 9 7 27 27 H 1.09000 * 109.46477 * 65.00408 * 11 9 7 28 28 H 1.09002 * 109.47382 * 59.99956 * 14 13 9 29 29 H 1.09001 * 109.46938 * 299.99942 * 14 13 9 30 30 H 1.08000 * 120.06189 * 359.97438 * 18 17 16 31 31 H 1.07995 * 119.66546 * 179.97438 * 19 18 17 32 32 H 1.07992 * 119.77566 * 180.02562 * 20 19 18 33 33 H 1.08004 * 120.15602 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 6 0.3717 -2.5804 -1.2490 12 17 -0.6388 -4.0719 -1.1768 13 8 2.1796 -3.5853 0.0005 14 6 1.6979 -4.7618 0.6533 15 6 2.7522 -5.8369 0.5932 16 7 2.6285 -7.0310 1.0948 17 6 3.7614 -7.7429 0.8636 18 6 4.1617 -9.0450 1.1748 19 6 5.3980 -9.4859 0.7962 20 6 6.2649 -8.6530 0.1028 21 6 5.8908 -7.3651 -0.2159 22 6 4.6384 -6.8994 0.1611 23 7 3.9698 -5.7022 0.0016 24 1 4.3064 -4.9111 -0.4476 25 1 -0.4850 0.8401 -0.0004 26 1 -0.2756 -1.7047 -1.2954 27 1 1.0038 -2.6123 -2.1365 28 1 0.7946 -5.1109 0.1530 29 1 1.4711 -4.5325 1.6945 30 1 3.4949 -9.7018 1.7137 31 1 5.7039 -10.4928 1.0389 32 1 7.2388 -9.0166 -0.1898 33 1 6.5691 -6.7210 -0.7560 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205809860.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:46 Heat of formation + Delta-G solvation = 4.628424 kcal Electronic energy + Delta-G solvation = -18838.642298 eV Core-core repulsion = 15697.530246 eV Total energy + Delta-G solvation = -3141.112052 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.92615 -37.73871 -36.93165 -34.86880 -33.43445 -32.95071 -30.43375 -29.83880 -28.92597 -26.32020 -25.32404 -22.30725 -21.95724 -21.07651 -20.62451 -17.79105 -17.11546 -16.84027 -15.85278 -15.51245 -15.36547 -14.61750 -14.37685 -14.15624 -13.85008 -13.82775 -12.98587 -12.57089 -12.28216 -11.99304 -11.90445 -11.51513 -11.41801 -11.27190 -11.11809 -10.97258 -10.56268 -10.50684 -10.14495 -9.81020 -9.55864 -9.49770 -8.75930 -8.50967 -8.21375 -7.91347 -6.45020 -4.52696 1.04930 1.61162 2.94681 3.09442 3.14529 3.18216 3.21288 3.34002 3.82952 3.96206 4.17327 4.67778 4.89225 4.99029 5.06504 5.28922 5.47209 5.55266 5.57168 5.81647 5.83824 5.96275 6.14138 6.20774 6.31705 6.47758 6.53670 6.62502 6.72251 6.95070 7.13578 7.47884 7.56004 7.76542 8.01061 8.13426 8.60920 9.15550 10.62023 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.023140 B = 0.004295 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.735662 B = 6517.289278 C = 7405.717526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.914 3.086 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.519 4.519 8 H 0.074 0.926 9 C 0.219 3.781 10 H 0.039 0.961 11 C -0.035 4.035 12 Cl -0.247 7.247 13 O -0.394 6.394 14 C 0.120 3.880 15 C 0.316 3.684 16 N -0.504 5.504 17 C 0.052 3.948 18 C -0.068 4.068 19 C -0.132 4.132 20 C -0.113 4.113 21 C -0.107 4.107 22 C 0.039 3.961 23 N -0.581 5.581 24 H 0.432 0.568 25 H 0.271 0.729 26 H 0.131 0.869 27 H 0.073 0.927 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.640 -10.980 -0.716 13.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.140 4.140 3 Si 0.740 3.260 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.557 4.557 8 H 0.092 0.908 9 C 0.163 3.837 10 H 0.056 0.944 11 C -0.097 4.097 12 Cl -0.221 7.221 13 O -0.313 6.313 14 C 0.041 3.959 15 C 0.049 3.951 16 N -0.226 5.226 17 C -0.067 4.067 18 C -0.088 4.088 19 C -0.153 4.153 20 C -0.133 4.133 21 C -0.128 4.128 22 C -0.072 4.072 23 N -0.191 5.191 24 H 0.272 0.728 25 H 0.081 0.919 26 H 0.149 0.851 27 H 0.091 0.909 28 H 0.118 0.882 29 H 0.095 0.905 30 H 0.144 0.856 31 H 0.143 0.857 32 H 0.144 0.856 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.857 -11.263 -0.354 13.191 hybrid contribution 0.914 1.566 -0.636 1.922 sum 7.771 -9.697 -0.989 12.466 Atomic orbital electron populations 1.69799 1.05978 1.27985 1.48786 1.24988 0.95153 0.99816 0.94081 0.86224 0.79682 0.81611 0.78454 1.20246 1.20787 1.19506 1.21012 0.94160 0.88145 1.52398 0.90825 1.20088 0.87136 0.83648 0.92807 0.94369 1.25920 0.95301 0.85941 1.02554 1.98614 1.75966 1.48604 1.98908 1.87713 1.44387 1.21578 1.77662 1.21169 0.92146 0.83310 0.99226 1.23640 0.85762 0.94014 0.91729 1.70341 1.24027 1.02570 1.25687 1.19116 0.90914 0.95328 1.01389 1.19971 0.96342 0.92503 0.99988 1.20572 0.93928 1.00002 1.00788 1.20797 0.99736 0.92987 0.99763 1.19966 0.93208 0.96656 1.02971 1.18982 0.96269 0.87730 1.04193 1.43055 1.14393 1.13382 1.48248 0.72816 0.91861 0.85136 0.90865 0.88248 0.90464 0.85590 0.85694 0.85611 0.86091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.63 11.29 55.43 0.63 -22.01 16 2 C 0.06 1.55 5.29 -17.82 -0.09 1.46 16 3 Si 0.91 19.41 29.54 -169.99 -5.02 14.39 16 4 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 7 C -0.52 -12.94 8.89 -34.44 -0.31 -13.24 16 8 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 9 C 0.22 5.04 2.38 -27.88 -0.07 4.97 16 10 H 0.04 0.94 7.79 -51.93 -0.40 0.54 16 11 C -0.03 -0.75 6.17 37.16 0.23 -0.52 16 12 Cl -0.25 -4.86 26.09 -51.86 -1.35 -6.22 16 13 O -0.39 -8.17 9.39 -35.23 -0.33 -8.51 16 14 C 0.12 2.25 6.16 36.01 0.22 2.47 16 15 C 0.32 5.75 7.91 -154.82 -1.22 4.53 16 16 N -0.50 -9.43 11.27 -8.23 -0.09 -9.52 16 17 C 0.05 0.87 7.23 -84.70 -0.61 0.26 16 18 C -0.07 -0.93 10.05 -39.61 -0.40 -1.33 16 19 C -0.13 -1.46 9.96 -39.97 -0.40 -1.86 16 20 C -0.11 -1.22 10.03 -39.52 -0.40 -1.61 16 21 C -0.11 -1.34 10.07 -39.50 -0.40 -1.74 16 22 C 0.04 0.62 7.30 -83.99 -0.61 0.00 16 23 N -0.58 -9.50 6.05 -8.00 -0.05 -9.55 16 24 H 0.43 6.43 8.54 -40.82 -0.35 6.09 16 25 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 26 H 0.13 3.09 5.95 -51.93 -0.31 2.78 16 27 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 28 H 0.10 1.89 5.09 -51.93 -0.26 1.63 16 29 H 0.08 1.41 8.09 -51.93 -0.42 0.99 16 30 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 32 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 LS Contribution 298.36 15.07 4.50 4.50 Total: -1.00 -26.83 298.36 -9.19 -36.01 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -3.41 Total: 7.51 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -4.06 Total: -6.61 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.48 Total: -41.08 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -0.33 Total: -8.51 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Atomic # 17 Polarization: -4.86 SS G_CDS: -1.35 Total: -6.22 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -26.83 -9.19 -36.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205809860.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.640 kcal (2) G-P(sol) polarization free energy of solvation -26.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds