Wall clock time and date at job start Tue Mar 31 2020 01:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00007 * 2 1 4 4 H 1.48497 * 109.47387 * 269.99727 * 3 2 1 5 5 H 1.48498 * 109.47223 * 30.00186 * 3 2 1 6 6 H 1.48503 * 109.47208 * 149.99766 * 3 2 1 7 7 C 1.37871 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00550 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00314 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.47080 * 300.00200 * 9 7 2 11 11 C 1.53008 * 109.46819 * 59.99366 * 9 7 2 12 12 Cl 1.80300 * 109.46854 * 185.00371 * 11 9 7 13 13 O 1.42899 * 109.47338 * 179.97438 * 9 7 2 14 14 C 1.42903 * 113.99629 * 150.00083 * 13 9 7 15 15 C 1.50701 * 109.46878 * 179.97438 * 14 13 9 16 16 N 1.30108 * 124.94920 * 180.02562 * 15 14 13 17 17 C 1.35787 * 109.64195 * 179.97438 * 16 15 14 18 18 C 1.39740 * 133.60100 * 180.02562 * 17 16 15 19 19 C 1.36609 * 119.88461 * 179.97438 * 18 17 16 20 20 C 1.38779 * 120.67123 * 359.97438 * 19 18 17 21 21 C 1.37853 * 120.44635 * 359.97438 * 20 19 18 22 22 C 1.38840 * 119.69351 * 0.04695 * 21 20 19 23 23 N 1.36037 * 124.95051 * 359.72278 * 15 14 13 24 24 H 0.97000 * 126.34682 * 0.02562 * 23 15 14 25 25 H 0.97004 * 119.99626 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47264 * 305.00848 * 11 9 7 27 27 H 1.09000 * 109.46477 * 65.00408 * 11 9 7 28 28 H 1.09002 * 109.47382 * 59.99956 * 14 13 9 29 29 H 1.09001 * 109.46938 * 299.99942 * 14 13 9 30 30 H 1.08000 * 120.06189 * 359.97438 * 18 17 16 31 31 H 1.07995 * 119.66546 * 179.97438 * 19 18 17 32 32 H 1.07992 * 119.77566 * 180.02562 * 20 19 18 33 33 H 1.08004 * 120.15602 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 6 0.3717 -2.5804 -1.2490 12 17 -0.6388 -4.0719 -1.1768 13 8 2.1796 -3.5853 0.0005 14 6 1.6979 -4.7618 0.6533 15 6 2.7522 -5.8369 0.5932 16 7 2.6285 -7.0310 1.0948 17 6 3.7614 -7.7429 0.8636 18 6 4.1617 -9.0450 1.1748 19 6 5.3980 -9.4859 0.7962 20 6 6.2649 -8.6530 0.1028 21 6 5.8908 -7.3651 -0.2159 22 6 4.6384 -6.8994 0.1611 23 7 3.9698 -5.7022 0.0016 24 1 4.3064 -4.9111 -0.4476 25 1 -0.4850 0.8401 -0.0004 26 1 -0.2756 -1.7047 -1.2954 27 1 1.0038 -2.6123 -2.1365 28 1 0.7946 -5.1109 0.1530 29 1 1.4711 -4.5325 1.6945 30 1 3.4949 -9.7018 1.7137 31 1 5.7039 -10.4928 1.0389 32 1 7.2388 -9.0166 -0.1898 33 1 6.5691 -6.7210 -0.7560 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205809860.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:45 Heat of formation + Delta-G solvation = -10.059354 kcal Electronic energy + Delta-G solvation = -18839.279208 eV Core-core repulsion = 15697.530246 eV Total energy + Delta-G solvation = -3141.748962 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.11752 -39.27222 -38.11163 -36.55443 -35.27756 -34.14702 -31.94589 -30.87624 -30.43616 -27.68933 -27.18688 -23.40028 -23.16910 -22.73869 -21.93044 -19.09185 -18.51906 -18.33928 -17.44023 -17.01515 -16.62701 -16.17824 -15.82765 -15.40659 -15.19173 -14.82708 -14.52497 -14.21144 -13.99076 -13.45895 -13.04048 -12.93530 -12.84820 -12.75059 -12.54485 -12.45563 -12.25589 -11.82234 -11.75436 -11.35900 -11.23994 -11.04045 -10.61731 -10.13763 -9.30894 -9.07692 -8.33769 -6.48654 -0.01925 0.59427 1.40879 1.44870 1.54911 1.60458 1.71189 1.94496 2.24832 2.52473 2.92333 3.00417 3.54977 3.74444 4.14411 4.21834 4.29247 4.34573 4.42433 4.47084 4.48978 4.53358 4.59820 4.85591 4.91588 5.15768 5.30257 5.45976 5.56152 5.58540 5.59615 5.89994 5.98164 6.28538 6.36640 6.69904 6.83436 7.23557 8.72854 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.023140 B = 0.004295 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.735662 B = 6517.289278 C = 7405.717526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.025 3.975 3 Si 0.974 3.026 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.224 3.776 10 H 0.016 0.984 11 C -0.025 4.025 12 Cl -0.228 7.228 13 O -0.394 6.394 14 C 0.128 3.872 15 C 0.291 3.709 16 N -0.525 5.525 17 C 0.011 3.989 18 C -0.085 4.085 19 C -0.119 4.119 20 C -0.097 4.097 21 C -0.118 4.118 22 C 0.025 3.975 23 N -0.579 5.579 24 H 0.434 0.566 25 H 0.274 0.726 26 H 0.113 0.887 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.135 0.865 31 H 0.164 0.836 32 H 0.167 0.833 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.868 -12.197 -1.192 15.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.176 4.176 3 Si 0.798 3.202 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.578 4.578 8 H 0.086 0.914 9 C 0.167 3.833 10 H 0.034 0.966 11 C -0.088 4.088 12 Cl -0.203 7.203 13 O -0.314 6.314 14 C 0.049 3.951 15 C 0.024 3.976 16 N -0.248 5.248 17 C -0.107 4.107 18 C -0.104 4.104 19 C -0.139 4.139 20 C -0.116 4.116 21 C -0.139 4.139 22 C -0.086 4.086 23 N -0.190 5.190 24 H 0.275 0.725 25 H 0.083 0.917 26 H 0.131 0.869 27 H 0.096 0.904 28 H 0.113 0.887 29 H 0.092 0.908 30 H 0.153 0.847 31 H 0.181 0.819 32 H 0.185 0.815 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 9.092 -12.501 -0.833 15.480 hybrid contribution 0.304 1.734 -0.468 1.822 sum 9.396 -10.767 -1.301 14.349 Atomic orbital electron populations 1.69893 1.07074 1.28788 1.49039 1.25702 0.95860 1.02587 0.93463 0.85296 0.78405 0.77850 0.78627 1.19512 1.20521 1.19399 1.21243 0.94119 0.89368 1.53114 0.91389 1.19859 0.87112 0.83942 0.92344 0.96639 1.25570 0.95031 0.86162 1.02065 1.98612 1.75434 1.47307 1.98905 1.87681 1.43990 1.21766 1.77930 1.21038 0.92551 0.82745 0.98753 1.23319 0.86583 0.93988 0.93753 1.70226 1.25564 1.02986 1.26037 1.19614 0.90881 0.96936 1.03272 1.20306 0.97889 0.91544 1.00685 1.21071 0.92467 1.01608 0.98800 1.21367 1.01033 0.91804 0.97418 1.20393 0.92279 0.97972 1.03211 1.19407 0.97387 0.87124 1.04645 1.42990 1.13963 1.13951 1.48050 0.72481 0.91662 0.86854 0.90389 0.88718 0.90771 0.84697 0.81852 0.81505 0.83862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.87 11.29 21.44 0.24 -46.63 16 2 C 0.02 1.24 5.29 84.65 0.45 1.69 16 3 Si 0.97 39.63 29.54 68.60 2.03 41.66 16 4 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 5 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 6 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.54 -27.38 8.89 25.60 0.23 -27.16 16 8 H 0.07 3.44 7.81 -2.91 -0.02 3.42 16 9 C 0.22 10.58 2.38 29.85 0.07 10.65 16 10 H 0.02 0.81 7.79 -2.39 -0.02 0.79 16 11 C -0.03 -1.13 6.17 71.98 0.44 -0.68 16 12 Cl -0.23 -9.09 26.09 -2.72 -0.07 -9.16 16 13 O -0.39 -16.85 9.39 -148.98 -1.40 -18.25 16 14 C 0.13 4.97 6.16 71.24 0.44 5.41 16 15 C 0.29 10.97 7.91 137.92 1.09 12.06 16 16 N -0.52 -20.21 11.27 -179.97 -2.03 -22.24 16 17 C 0.01 0.38 7.23 39.45 0.29 0.66 16 18 C -0.08 -2.17 10.05 22.25 0.22 -1.94 16 19 C -0.12 -2.17 9.96 22.02 0.22 -1.95 16 20 C -0.10 -1.67 10.03 22.31 0.22 -1.44 16 21 C -0.12 -2.65 10.07 22.32 0.22 -2.42 16 22 C 0.02 0.76 7.30 38.86 0.28 1.04 16 23 N -0.58 -19.24 6.05 -179.23 -1.08 -20.32 16 24 H 0.43 13.20 8.54 -92.71 -0.79 12.41 16 25 H 0.27 13.35 8.31 -92.71 -0.77 12.58 16 26 H 0.11 5.47 5.95 -2.39 -0.01 5.46 16 27 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 28 H 0.10 3.73 5.09 -2.39 -0.01 3.72 16 29 H 0.07 2.87 8.09 -2.39 -0.02 2.85 16 30 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 31 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 32 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 33 H 0.14 2.51 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -58.53 298.36 2.22 -56.30 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 0.36 Total: 22.73 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: 4.18 Total: -4.09 kcal Atomic # 7 Polarization: -86.32 SS G_CDS: -2.87 Total: -89.19 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -1.40 Total: -18.25 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.66 kcal Atomic # 17 Polarization: -9.09 SS G_CDS: -0.07 Total: -9.16 kcal Total: -58.53 2.22 -56.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205809860.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.244 kcal (2) G-P(sol) polarization free energy of solvation -58.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds