Wall clock time and date at job start Tue Mar 31 2020 01:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46494 * 120.00444 * 2 1 4 4 C 1.50703 * 109.47225 * 275.27579 * 3 2 1 5 5 H 1.07996 * 120.00066 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99842 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00028 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99805 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46894 * 59.99972 * 8 6 4 10 10 H 1.48504 * 109.47200 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47180 * 300.00441 * 8 6 4 12 12 S 1.65608 * 119.99916 * 180.27320 * 2 1 3 13 13 O 1.42100 * 106.40059 * 23.26834 * 12 2 1 14 14 O 1.42096 * 106.40050 * 156.18867 * 12 2 1 15 15 N 1.65599 * 107.21718 * 269.72928 * 12 2 1 16 16 C 1.46409 * 120.27239 * 89.99683 * 15 12 2 17 17 C 1.52666 * 110.47488 * 115.49511 * 16 15 12 18 18 C 1.53078 * 110.14337 * 64.89564 * 17 16 15 19 19 S 1.81814 * 108.86516 * 295.79348 * 18 17 16 20 20 C 1.47085 * 120.26998 * 269.72129 * 15 12 2 21 21 H 1.09000 * 109.47297 * 269.72722 * 1 2 3 22 22 H 1.09002 * 109.47192 * 29.72648 * 1 2 3 23 23 H 1.08996 * 109.47342 * 149.72358 * 1 2 3 24 24 H 1.09005 * 109.47101 * 35.27701 * 3 2 1 25 25 H 1.09001 * 109.47746 * 155.26944 * 3 2 1 26 26 H 0.97002 * 119.99268 * 180.02562 * 7 6 4 27 27 H 1.08999 * 109.30353 * 235.80360 * 16 15 12 28 28 H 1.08997 * 109.30098 * 355.39221 * 16 15 12 29 29 H 1.08998 * 109.35855 * 185.10332 * 17 16 15 30 30 H 1.08999 * 109.35557 * 304.82779 * 17 16 15 31 31 H 1.08997 * 109.57089 * 55.61184 * 18 17 16 32 32 H 1.09007 * 109.56562 * 175.85882 * 18 17 16 33 33 H 1.09009 * 109.74196 * 357.50569 * 20 15 12 34 34 H 1.09003 * 109.74162 * 118.21608 * 20 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3356 1.7690 -1.4148 5 1 1.9196 1.1988 -2.2322 6 6 2.9929 2.9548 -1.6656 7 7 3.4990 3.6494 -0.6701 8 14 3.1647 3.5746 -3.4193 9 1 1.8161 3.7811 -4.0057 10 1 3.9062 4.8613 -3.4192 11 1 3.9078 2.5745 -4.2273 12 16 2.2930 -1.4342 -0.0068 13 8 1.4090 -2.4052 -0.5500 14 8 3.5736 -1.1555 -0.5559 15 7 2.5445 -1.8625 1.5729 16 6 1.5615 -2.6856 2.2800 17 6 2.1675 -4.0351 2.6571 18 6 3.3041 -3.8398 3.6637 19 16 4.6391 -2.8970 2.8672 20 6 3.7602 -1.4242 2.2754 21 1 -0.3634 -0.0049 1.0276 22 1 -0.3634 0.8924 -0.5096 23 1 -0.3634 -0.8874 -0.5181 24 1 1.6526 2.0028 0.5935 25 1 3.1875 1.1166 0.4299 26 1 3.9612 4.4838 -0.8466 27 1 1.2426 -2.1683 3.1848 28 1 0.6981 -2.8492 1.6352 29 1 1.3969 -4.6660 3.1002 30 1 2.5592 -4.5181 1.7619 31 1 2.9348 -3.2899 4.5293 32 1 3.6808 -4.8119 3.9821 33 1 4.3998 -0.8663 1.5913 34 1 3.4890 -0.7947 3.1229 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213877348.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:18 Heat of formation + Delta-G solvation = -70.644413 kcal Electronic energy + Delta-G solvation = -19043.976293 eV Core-core repulsion = 16037.087824 eV Total energy + Delta-G solvation = -3006.888469 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 280.070 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -37.35304 -36.76142 -35.55886 -35.23846 -32.67646 -32.46945 -28.04699 -27.75752 -25.24563 -24.88161 -22.31228 -21.87837 -18.64906 -17.57339 -17.27182 -16.51360 -16.40652 -15.77159 -15.03699 -14.66276 -14.28372 -14.12035 -13.79488 -13.57856 -13.39968 -13.31114 -12.44167 -12.24727 -12.18803 -11.91889 -11.68820 -11.56992 -11.29583 -11.20794 -11.11313 -10.93729 -10.75290 -10.54868 -10.23616 -10.06225 -9.82487 -8.94678 -8.47383 -8.14445 -7.77107 -6.10055 -4.14492 0.99988 1.68860 2.45850 3.27140 3.32354 3.35958 3.40796 3.95332 4.42033 4.52595 4.58609 4.81752 4.87842 5.10559 5.22900 5.25278 5.31354 5.42650 5.50680 5.52741 5.59658 5.81672 5.94016 5.97509 6.22553 6.37678 6.54096 7.14537 7.32382 7.52660 7.87051 8.15275 8.87532 9.51169 10.98500 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.028716 B = 0.005815 C = 0.005351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.833741 B = 4814.250581 C = 5231.357623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.995 5.995 3 C 0.257 3.743 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.274 1.274 12 S 2.776 3.224 13 O -0.990 6.990 14 O -0.954 6.954 15 N -1.006 6.006 16 C 0.112 3.888 17 C -0.137 4.137 18 C -0.079 4.079 19 S -0.269 6.269 20 C 0.164 3.836 21 H 0.038 0.962 22 H 0.079 0.921 23 H 0.065 0.935 24 H 0.035 0.965 25 H 0.036 0.964 26 H 0.265 0.735 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.134 0.866 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.530 -11.748 10.389 16.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.838 5.838 3 C 0.135 3.865 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.199 1.199 12 S 2.784 3.216 13 O -0.974 6.974 14 O -0.937 6.937 15 N -0.843 5.843 16 C -0.014 4.014 17 C -0.178 4.178 18 C -0.228 4.228 19 S -0.045 6.045 20 C -0.073 4.073 21 H 0.057 0.943 22 H 0.098 0.902 23 H 0.084 0.916 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.115 0.885 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.122 0.878 33 H 0.152 0.848 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.066 -12.291 9.585 15.885 hybrid contribution -1.201 1.024 -0.401 1.629 sum -4.268 -11.267 9.185 15.149 Atomic orbital electron populations 1.21357 0.80062 1.03577 1.00186 1.57685 1.14407 1.23305 1.88392 1.19065 0.90864 0.78731 0.97820 1.21436 1.36390 1.06391 0.92864 0.92216 1.24926 0.94978 0.96439 0.97561 1.69904 1.37129 1.15364 1.31050 0.86564 0.78334 0.78046 0.84578 1.20154 1.21104 1.19928 1.02284 0.73644 0.72876 0.72747 1.93515 1.67235 1.60444 1.76235 1.93632 1.40514 1.84794 1.74803 1.58751 1.27990 1.64262 1.33339 1.21248 0.91206 0.90619 0.98328 1.22004 0.97986 0.97943 0.99876 1.23366 0.96841 1.02648 0.99899 1.87055 1.18668 1.25699 1.73064 1.23235 0.88105 0.94855 1.01064 0.94306 0.90235 0.91612 0.94654 0.94625 0.92560 0.91102 0.88456 0.89665 0.90027 0.89756 0.87768 0.84794 0.88859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.58 10.68 59.84 0.64 2.22 16 2 N -1.00 -20.26 3.23 -123.06 -0.40 -20.66 16 3 C 0.26 6.31 5.08 -5.20 -0.03 6.28 16 4 C -0.53 -14.79 9.38 -34.44 -0.32 -15.11 16 5 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 7 N -0.90 -25.81 13.29 55.43 0.74 -25.07 16 8 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 12 S 2.78 54.85 6.06 -107.50 -0.65 54.20 16 13 O -0.99 -20.16 15.37 -57.17 -0.88 -21.04 16 14 O -0.95 -22.72 15.69 -57.17 -0.90 -23.62 16 15 N -1.01 -15.30 3.26 -118.17 -0.39 -15.68 16 16 C 0.11 1.30 6.04 -4.26 -0.03 1.27 16 17 C -0.14 -1.37 5.90 -26.86 -0.16 -1.53 16 18 C -0.08 -0.77 6.45 37.20 0.24 -0.53 16 19 S -0.27 -3.66 22.48 -107.50 -2.42 -6.07 16 20 C 0.16 2.41 6.97 60.17 0.42 2.83 16 21 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 22 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 23 H 0.07 1.03 7.02 -51.93 -0.36 0.67 16 24 H 0.04 0.88 8.11 -51.93 -0.42 0.46 16 25 H 0.04 0.92 7.61 -51.93 -0.40 0.52 16 26 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.10 1.13 7.01 -51.93 -0.36 0.76 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.10 0.85 8.14 -51.92 -0.42 0.43 16 33 H 0.13 2.24 6.93 -51.92 -0.36 1.88 16 34 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 304.06 15.07 4.58 4.58 Total: -1.00 -32.88 304.06 -9.49 -42.37 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -4.83 Total: -2.81 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: 0.67 Total: -2.88 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: -0.05 Total: -61.41 kcal Atomic # 8 Polarization: -42.88 SS G_CDS: -1.78 Total: -44.66 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 51.19 SS G_CDS: -3.07 Total: 48.12 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.88 -9.49 -42.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213877348.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.278 kcal (2) G-P(sol) polarization free energy of solvation -32.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds