Wall clock time and date at job start Tue Mar 31 2020 02:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38412 * 120.26910 * 2 1 4 4 C 1.39942 * 118.34289 * 180.02562 * 3 2 1 5 5 C 1.43202 * 120.60227 * 179.97438 * 4 3 2 6 6 N 4.80310 * 136.38054 * 359.97438 * 2 1 3 7 7 C 1.40366 * 118.80193 * 0.02562 * 4 3 2 8 8 O 1.35474 * 119.80196 * 179.97438 * 7 4 3 9 9 C 1.42903 * 116.99710 * 180.02562 * 8 7 4 10 10 H 1.08993 * 109.47065 * 29.99817 * 9 8 7 11 11 C 1.50702 * 109.46821 * 150.00255 * 9 8 7 12 12 H 1.07998 * 120.00139 * 34.99036 * 11 9 8 13 13 C 1.37880 * 119.99845 * 214.98770 * 11 9 8 14 14 N 1.31509 * 119.99938 * 184.83042 * 13 11 9 15 15 Si 1.86806 * 119.99787 * 4.83305 * 13 11 9 16 16 H 1.48501 * 109.47194 * 84.80446 * 15 13 11 17 17 H 1.48497 * 109.46930 * 204.80517 * 15 13 11 18 18 H 1.48500 * 109.47018 * 324.80048 * 15 13 11 19 19 C 1.53005 * 109.46686 * 269.99716 * 9 8 7 20 20 Cl 1.80302 * 109.46899 * 65.72070 * 19 9 8 21 21 N 1.32165 * 120.39501 * 359.97438 * 7 4 3 22 22 C 1.31945 * 121.80982 * 359.97438 * 21 7 4 23 23 C 1.50698 * 119.40919 * 180.02562 * 22 21 7 24 24 H 1.08997 * 109.47515 * 269.97688 * 1 2 3 25 25 H 1.08994 * 109.47396 * 29.97689 * 1 2 3 26 26 H 1.09002 * 109.47108 * 149.97714 * 1 2 3 27 27 H 1.07997 * 120.82865 * 0.02562 * 3 2 1 28 28 H 0.97002 * 119.99833 * 179.97438 * 14 13 11 29 29 H 1.08999 * 109.46771 * 185.71453 * 19 9 8 30 30 H 1.08990 * 109.47454 * 305.71462 * 19 9 8 31 31 H 1.08995 * 109.47081 * 89.99518 * 23 22 21 32 32 H 1.08997 * 109.47428 * 210.00275 * 23 22 21 33 33 H 1.09008 * 109.46773 * 330.00313 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2047 1.1954 0.0000 4 6 3.6033 1.1484 -0.0006 5 6 4.3733 2.3558 -0.0011 6 7 4.9841 3.3135 -0.0015 7 6 4.2378 -0.1037 -0.0016 8 8 5.5908 -0.1728 -0.0027 9 6 6.1737 -1.4776 -0.0043 10 1 5.5089 -2.1718 -0.5182 11 6 7.5015 -1.4336 -0.7157 12 1 8.1297 -0.5590 -0.6331 13 6 7.9144 -2.5101 -1.4719 14 7 9.1123 -2.5116 -2.0146 15 14 6.7722 -3.9663 -1.7256 16 1 5.8633 -3.6895 -2.8669 17 1 7.5757 -5.1809 -2.0159 18 1 5.9697 -4.1861 -0.4956 19 6 6.3828 -1.9444 1.4377 20 17 4.7815 -2.1583 2.2383 21 7 3.5233 -1.2155 -0.0016 22 6 2.2040 -1.1943 -0.0001 23 6 1.4430 -2.4951 0.0005 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3634 0.8901 -0.5134 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6827 2.1409 0.0004 28 1 9.4029 -3.2690 -2.5463 29 1 6.9188 -2.8935 1.4381 30 1 6.9637 -1.1989 1.9804 31 1 1.2608 -2.8090 1.0282 32 1 0.4908 -2.3592 -0.5123 33 1 2.0273 -3.2580 -0.5142 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225529800.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:38 Heat of formation + Delta-G solvation = 9.478108 kcal Electronic energy + Delta-G solvation = -19588.471860 eV Core-core repulsion = 16447.570106 eV Total energy + Delta-G solvation = -3140.901754 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.57008 -37.96211 -36.28713 -35.10173 -33.60096 -33.04248 -32.70011 -30.39572 -28.63892 -26.44303 -25.35808 -23.01775 -22.60977 -20.85403 -18.59768 -17.52444 -17.26912 -16.31885 -15.60573 -14.82112 -14.35438 -14.15813 -13.66689 -13.54604 -13.37675 -13.13973 -13.02958 -12.88356 -12.78966 -12.59557 -12.45305 -12.14527 -11.98030 -11.69561 -11.47768 -11.32833 -11.07929 -10.72820 -10.08526 -9.93460 -9.73215 -9.60695 -9.21146 -9.11840 -8.88657 -7.90022 -6.47010 -4.56030 0.86761 1.46803 3.00019 3.01703 3.14429 3.18430 3.22977 3.26742 3.59793 4.09399 4.09676 4.09992 4.48010 4.73412 4.88363 4.98250 5.12342 5.27691 5.44227 5.59208 5.60799 5.69027 5.80618 5.85847 5.92994 5.98904 6.03856 6.16806 6.22907 6.60904 6.68031 7.11830 7.69420 7.83607 8.13954 8.24192 8.64815 9.08911 10.62969 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.016168 B = 0.007404 C = 0.006358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.390665 B = 3780.812456 C = 4402.915594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.201 4.201 3 C 0.007 3.993 4 C -0.126 4.126 5 C 0.276 3.724 6 N -0.427 5.427 7 C 0.389 3.611 8 O -0.284 6.284 9 C 0.180 3.820 10 H 0.071 0.929 11 C -0.528 4.528 12 H 0.088 0.912 13 C 0.088 3.912 14 N -0.869 5.869 15 Si 0.866 3.134 16 H -0.267 1.267 17 H -0.280 1.280 18 H -0.252 1.252 19 C -0.034 4.034 20 Cl -0.221 7.221 21 N -0.514 5.514 22 C 0.202 3.798 23 C -0.111 4.111 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.142 0.858 28 H 0.274 0.726 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.345 -0.631 4.296 17.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.204 4.204 3 C -0.020 4.020 4 C -0.133 4.133 5 C -0.039 4.039 6 N -0.104 5.104 7 C 0.207 3.793 8 O -0.189 6.189 9 C 0.126 3.874 10 H 0.088 0.912 11 C -0.564 4.564 12 H 0.107 0.893 13 C -0.119 4.119 14 N -0.503 5.503 15 Si 0.691 3.309 16 H -0.192 1.192 17 H -0.205 1.205 18 H -0.176 1.176 19 C -0.097 4.097 20 Cl -0.195 7.195 21 N -0.237 5.237 22 C 0.062 3.938 23 C -0.168 4.168 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.160 0.840 28 H 0.084 0.916 29 H 0.117 0.883 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.628 0.126 4.233 16.192 hybrid contribution -0.922 -0.583 -0.108 1.096 sum -16.550 -0.456 4.125 17.062 Atomic orbital electron populations 1.20651 0.90007 1.02823 1.02204 1.20262 0.97404 0.92698 1.10014 1.21172 0.90431 0.98744 0.91698 1.15901 0.91966 0.86484 1.18989 1.25076 0.93208 0.92348 0.93267 1.81155 1.07546 1.11721 1.09968 1.19977 0.86314 0.87497 0.85529 1.86521 1.12620 1.36170 1.83547 1.20876 0.94871 0.79887 0.91812 0.91167 1.20700 0.99839 1.05134 1.30773 0.89349 1.24960 0.95162 0.98174 0.93597 1.69843 1.17559 1.31554 1.31345 0.86981 0.81331 0.81986 0.80640 1.19157 1.20547 1.17609 1.25782 0.83654 1.03976 0.96269 1.98659 1.38747 1.98253 1.83845 1.67539 1.07929 1.29084 1.19138 1.21009 0.88460 0.95074 0.89277 1.20875 0.99158 0.93433 1.03377 0.91430 0.91726 0.91063 0.83977 0.91555 0.88341 0.89340 0.89962 0.90145 0.90157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.76 9.61 36.01 0.35 -0.41 16 2 C -0.20 -2.34 5.89 -104.54 -0.62 -2.95 16 3 C 0.01 0.09 9.58 -38.88 -0.37 -0.28 16 4 C -0.13 -2.10 5.77 -106.53 -0.61 -2.71 16 5 C 0.28 5.02 14.91 -22.47 -0.34 4.68 16 6 N -0.43 -8.41 18.54 41.83 0.78 -7.64 16 7 C 0.39 7.51 6.68 -16.61 -0.11 7.40 16 8 O -0.28 -6.45 9.18 -18.11 -0.17 -6.61 16 9 C 0.18 4.18 1.91 -27.88 -0.05 4.12 16 10 H 0.07 1.64 4.14 -51.93 -0.22 1.43 16 11 C -0.53 -14.16 9.23 -34.44 -0.32 -14.48 16 12 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16 13 C 0.09 2.36 5.47 -17.82 -0.10 2.27 16 14 N -0.87 -24.66 13.96 55.43 0.77 -23.88 16 15 Si 0.87 19.74 26.99 -169.99 -4.59 15.15 16 16 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 H -0.25 -5.48 6.82 56.52 0.39 -5.09 16 19 C -0.03 -0.69 6.31 37.16 0.23 -0.46 16 20 Cl -0.22 -4.10 25.94 -51.86 -1.35 -5.45 16 21 N -0.51 -9.20 6.25 -9.20 -0.06 -9.25 16 22 C 0.20 2.81 6.78 -82.53 -0.56 2.25 16 23 C -0.11 -1.18 9.75 36.00 0.35 -0.83 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 26 H 0.07 0.46 5.93 -51.93 -0.31 0.15 16 27 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 28 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.10 1.97 8.14 -51.93 -0.42 1.55 16 30 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 0.61 5.90 -51.93 -0.31 0.30 16 33 H 0.08 0.94 8.14 -51.92 -0.42 0.51 16 LS Contribution 302.97 15.07 4.57 4.57 Total: -1.00 -29.93 302.97 -5.55 -35.47 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -3.36 Total: -0.96 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -2.14 Total: -1.40 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: 1.49 Total: -40.77 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: -0.17 Total: -6.61 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.59 Total: 15.15 kcal Atomic # 17 Polarization: -4.10 SS G_CDS: -1.35 Total: -5.45 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.93 -5.55 -35.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225529800.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.952 kcal (2) G-P(sol) polarization free energy of solvation -29.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds