Wall clock time and date at job start Tue Mar 31 2020 02:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38412 * 120.26910 * 2 1 4 4 C 1.39942 * 118.34289 * 180.02562 * 3 2 1 5 5 C 1.43202 * 120.60227 * 179.97438 * 4 3 2 6 6 N 4.80310 * 136.38054 * 359.97438 * 2 1 3 7 7 C 1.40366 * 118.80193 * 0.02562 * 4 3 2 8 8 O 1.35474 * 119.80196 * 179.97438 * 7 4 3 9 9 C 1.42903 * 116.99710 * 180.02562 * 8 7 4 10 10 H 1.08993 * 109.47065 * 29.99817 * 9 8 7 11 11 C 1.50702 * 109.46821 * 150.00255 * 9 8 7 12 12 H 1.07998 * 120.00139 * 34.99036 * 11 9 8 13 13 C 1.37880 * 119.99845 * 214.98770 * 11 9 8 14 14 N 1.31509 * 119.99938 * 184.83042 * 13 11 9 15 15 Si 1.86806 * 119.99787 * 4.83305 * 13 11 9 16 16 H 1.48501 * 109.47194 * 84.80446 * 15 13 11 17 17 H 1.48497 * 109.46930 * 204.80517 * 15 13 11 18 18 H 1.48500 * 109.47018 * 324.80048 * 15 13 11 19 19 C 1.53005 * 109.46686 * 269.99716 * 9 8 7 20 20 Cl 1.80302 * 109.46899 * 65.72070 * 19 9 8 21 21 N 1.32165 * 120.39501 * 359.97438 * 7 4 3 22 22 C 1.31945 * 121.80982 * 359.97438 * 21 7 4 23 23 C 1.50698 * 119.40919 * 180.02562 * 22 21 7 24 24 H 1.08997 * 109.47515 * 269.97688 * 1 2 3 25 25 H 1.08994 * 109.47396 * 29.97689 * 1 2 3 26 26 H 1.09002 * 109.47108 * 149.97714 * 1 2 3 27 27 H 1.07997 * 120.82865 * 0.02562 * 3 2 1 28 28 H 0.97002 * 119.99833 * 179.97438 * 14 13 11 29 29 H 1.08999 * 109.46771 * 185.71453 * 19 9 8 30 30 H 1.08990 * 109.47454 * 305.71462 * 19 9 8 31 31 H 1.08995 * 109.47081 * 89.99518 * 23 22 21 32 32 H 1.08997 * 109.47428 * 210.00275 * 23 22 21 33 33 H 1.09008 * 109.46773 * 330.00313 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2047 1.1954 0.0000 4 6 3.6033 1.1484 -0.0006 5 6 4.3733 2.3558 -0.0011 6 7 4.9841 3.3135 -0.0015 7 6 4.2378 -0.1037 -0.0016 8 8 5.5908 -0.1728 -0.0027 9 6 6.1737 -1.4776 -0.0043 10 1 5.5089 -2.1718 -0.5182 11 6 7.5015 -1.4336 -0.7157 12 1 8.1297 -0.5590 -0.6331 13 6 7.9144 -2.5101 -1.4719 14 7 9.1123 -2.5116 -2.0146 15 14 6.7722 -3.9663 -1.7256 16 1 5.8633 -3.6895 -2.8669 17 1 7.5757 -5.1809 -2.0159 18 1 5.9697 -4.1861 -0.4956 19 6 6.3828 -1.9444 1.4377 20 17 4.7815 -2.1583 2.2383 21 7 3.5233 -1.2155 -0.0016 22 6 2.2040 -1.1943 -0.0001 23 6 1.4430 -2.4951 0.0005 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3634 0.8901 -0.5134 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6827 2.1409 0.0004 28 1 9.4029 -3.2690 -2.5463 29 1 6.9188 -2.8935 1.4381 30 1 6.9637 -1.1989 1.9804 31 1 1.2608 -2.8090 1.0282 32 1 0.4908 -2.3592 -0.5123 33 1 2.0273 -3.2580 -0.5142 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225529800.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:38 Heat of formation + Delta-G solvation = -9.451121 kcal Electronic energy + Delta-G solvation = -19589.292693 eV Core-core repulsion = 16447.570106 eV Total energy + Delta-G solvation = -3141.722587 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.81582 -39.42843 -37.72001 -36.67214 -35.35386 -34.18461 -34.03823 -32.13839 -29.58025 -27.46717 -27.23211 -24.22151 -23.82958 -22.41689 -20.08021 -19.02255 -18.98816 -17.57803 -17.09247 -16.49811 -15.59053 -15.32466 -15.11288 -14.83600 -14.73206 -14.70266 -14.60469 -14.15328 -13.89614 -13.79013 -13.53325 -13.42906 -13.26689 -12.99856 -12.90291 -12.81470 -12.30029 -12.17335 -11.92098 -11.55047 -11.25214 -11.14484 -10.91750 -10.58796 -10.36134 -9.13703 -8.52701 -6.68244 -0.31745 0.35437 1.27098 1.31834 1.43706 1.45311 1.58653 1.93800 2.15528 2.18679 2.81261 2.83724 2.90460 3.34491 3.82132 3.92827 4.10497 4.14592 4.26638 4.27792 4.46666 4.73855 4.76047 4.81994 4.89439 4.95986 5.06188 5.17708 5.22007 5.28980 5.38500 5.69510 5.88239 6.38726 6.44454 6.55735 6.93756 7.03166 8.62114 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.016168 B = 0.007404 C = 0.006358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.390665 B = 3780.812456 C = 4402.915594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.177 4.177 3 C 0.018 3.982 4 C -0.140 4.140 5 C 0.289 3.711 6 N -0.467 5.467 7 C 0.357 3.643 8 O -0.317 6.317 9 C 0.192 3.808 10 H 0.070 0.930 11 C -0.542 4.542 12 H 0.038 0.962 13 C 0.039 3.961 14 N -0.918 5.918 15 Si 0.931 3.069 16 H -0.263 1.263 17 H -0.270 1.270 18 H -0.233 1.233 19 C -0.032 4.032 20 Cl -0.195 7.195 21 N -0.538 5.538 22 C 0.187 3.813 23 C -0.110 4.110 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.180 0.820 28 H 0.279 0.721 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.116 0.884 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.935 -1.840 4.847 22.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.180 4.180 3 C -0.009 4.009 4 C -0.147 4.147 5 C -0.025 4.025 6 N -0.144 5.144 7 C 0.175 3.825 8 O -0.223 6.223 9 C 0.137 3.863 10 H 0.088 0.912 11 C -0.579 4.579 12 H 0.056 0.944 13 C -0.163 4.163 14 N -0.554 5.554 15 Si 0.751 3.249 16 H -0.188 1.188 17 H -0.195 1.195 18 H -0.156 1.156 19 C -0.095 4.095 20 Cl -0.169 7.169 21 N -0.262 5.262 22 C 0.048 3.952 23 C -0.167 4.167 24 H 0.103 0.897 25 H 0.102 0.898 26 H 0.107 0.893 27 H 0.198 0.802 28 H 0.088 0.912 29 H 0.121 0.879 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.135 0.865 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.260 -1.074 4.802 20.849 hybrid contribution 0.299 -0.119 -0.235 0.398 sum -19.962 -1.193 4.566 20.512 Atomic orbital electron populations 1.20811 0.86231 1.04750 1.03847 1.20780 0.99762 0.91265 1.06165 1.21645 0.88466 1.00973 0.89846 1.16121 0.93538 0.84664 1.20384 1.25453 0.92581 0.92313 0.92174 1.81149 1.08456 1.13179 1.11615 1.20114 0.85001 0.89044 0.88305 1.86399 1.15361 1.35342 1.85195 1.20530 0.92725 0.80449 0.92637 0.91185 1.20808 1.01432 1.03699 1.31982 0.94364 1.25794 0.96514 1.01081 0.92953 1.69971 1.19636 1.32986 1.32806 0.85971 0.79362 0.78273 0.81248 1.18829 1.19511 1.15578 1.25403 0.84786 1.04037 0.95254 1.98648 1.36951 1.98166 1.83101 1.67477 1.09957 1.28703 1.20050 1.21755 0.87408 0.97591 0.88417 1.21026 0.99996 0.91239 1.04429 0.89683 0.89800 0.89281 0.80231 0.91162 0.87886 0.89577 0.88780 0.86544 0.91413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.89 9.61 71.24 0.68 -0.21 16 2 C -0.18 -3.32 5.89 -19.81 -0.12 -3.44 16 3 C 0.02 0.38 9.58 22.72 0.22 0.60 16 4 C -0.14 -4.51 5.77 -21.10 -0.12 -4.64 16 5 C 0.29 10.59 14.91 88.33 1.32 11.90 16 6 N -0.47 -18.81 18.54 19.00 0.35 -18.46 16 7 C 0.36 13.70 6.68 85.16 0.57 14.27 16 8 O -0.32 -14.90 9.18 -87.73 -0.80 -15.70 16 9 C 0.19 9.10 1.91 29.85 0.06 9.16 16 10 H 0.07 3.27 4.14 -2.39 -0.01 3.26 16 11 C -0.54 -30.71 9.23 25.60 0.24 -30.48 16 12 H 0.04 2.47 8.06 -2.91 -0.02 2.44 16 13 C 0.04 2.17 5.47 84.66 0.46 2.63 16 14 N -0.92 -54.36 13.96 21.45 0.30 -54.06 16 15 Si 0.93 40.95 26.99 68.60 1.85 42.80 16 16 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 17 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 18 H -0.23 -9.43 6.82 99.48 0.68 -8.75 16 19 C -0.03 -1.30 6.31 71.98 0.45 -0.85 16 20 Cl -0.19 -6.95 25.94 -2.72 -0.07 -7.02 16 21 N -0.54 -18.42 6.25 -296.03 -1.85 -20.27 16 22 C 0.19 4.57 6.78 42.55 0.29 4.86 16 23 C -0.11 -1.85 9.75 71.24 0.69 -1.16 16 24 H 0.08 0.59 8.14 -2.39 -0.02 0.58 16 25 H 0.08 0.52 8.09 -2.39 -0.02 0.50 16 26 H 0.09 0.55 5.93 -2.39 -0.01 0.53 16 27 H 0.18 2.47 8.06 -2.91 -0.02 2.45 16 28 H 0.28 15.17 8.31 -92.71 -0.77 14.40 16 29 H 0.10 4.11 8.14 -2.39 -0.02 4.09 16 30 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 31 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.12 1.09 5.90 -2.39 -0.01 1.08 16 33 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 Total: -1.00 -70.22 302.97 5.64 -64.58 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: 1.12 Total: 5.47 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: 4.74 Total: 2.66 kcal Atomic # 7 Polarization: -91.59 SS G_CDS: -1.20 Total: -92.79 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.80 Total: -15.70 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 1.85 Total: 42.80 kcal Atomic # 17 Polarization: -6.95 SS G_CDS: -0.07 Total: -7.02 kcal Total: -70.22 5.64 -64.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225529800.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.129 kcal (2) G-P(sol) polarization free energy of solvation -70.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds