Wall clock time and date at job start Tue Mar 31 2020 02:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38321 * 119.40368 * 2 1 4 4 C 1.38368 * 119.45641 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.82626 * 179.97438 * 4 3 2 6 6 C 1.39984 * 118.34875 * 359.97438 * 4 3 2 7 7 C 1.43200 * 120.60191 * 180.02562 * 6 4 3 8 8 N 4.80306 * 135.07513 * 0.02562 * 3 1 2 9 9 C 1.40320 * 118.79903 * 0.02562 * 6 4 3 10 10 O 1.35477 * 119.80317 * 179.97438 * 9 6 4 11 11 C 1.42895 * 117.00211 * 179.97438 * 10 9 6 12 12 H 1.08998 * 109.47031 * 30.00513 * 11 10 9 13 13 C 1.50698 * 109.47018 * 150.00406 * 11 10 9 14 14 H 1.08002 * 120.00082 * 95.12512 * 13 11 10 15 15 C 1.37880 * 119.99885 * 275.12079 * 13 11 10 16 16 N 1.31510 * 120.00183 * 355.67744 * 15 13 11 17 17 Si 1.86803 * 120.00035 * 175.67291 * 15 13 11 18 18 H 1.48500 * 109.46897 * 90.00042 * 17 15 13 19 19 H 1.48503 * 109.47264 * 210.00345 * 17 15 13 20 20 H 1.48497 * 109.47348 * 330.00529 * 17 15 13 21 21 C 1.52999 * 109.47548 * 270.00162 * 11 10 9 22 22 Cl 1.80303 * 109.46934 * 65.71789 * 21 11 10 23 23 N 1.31906 * 119.40486 * 180.27404 * 2 1 3 24 24 H 1.09001 * 109.47211 * 90.00126 * 1 2 3 25 25 H 1.08999 * 109.47231 * 210.00155 * 1 2 3 26 26 H 1.09000 * 109.47602 * 330.00277 * 1 2 3 27 27 H 1.07998 * 120.27031 * 359.97438 * 3 2 1 28 28 H 1.08998 * 109.47187 * 270.02024 * 5 4 3 29 29 H 1.08997 * 109.47463 * 30.01718 * 5 4 3 30 30 H 1.08998 * 109.47588 * 150.02286 * 5 4 3 31 31 H 0.97003 * 120.00032 * 5.55698 * 16 15 13 32 32 H 1.08991 * 109.47493 * 185.71950 * 21 11 10 33 33 H 1.09001 * 109.47092 * 305.72206 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1861 1.2050 0.0000 4 6 3.5697 1.2063 -0.0005 5 6 4.3408 2.5011 -0.0011 6 6 4.2356 -0.0250 -0.0005 7 6 5.6665 -0.0800 -0.0005 8 7 6.8017 -0.1237 -0.0015 9 6 3.4755 -1.2045 -0.0005 10 8 4.0989 -2.4073 -0.0010 11 6 3.2670 -3.5692 -0.0004 12 1 2.3316 -3.3466 -0.5136 13 6 3.9746 -4.6939 -0.7113 14 1 4.5420 -5.4181 -0.1455 15 6 3.8975 -4.7985 -2.0839 16 7 3.1383 -3.9684 -2.7651 17 14 4.8716 -6.1193 -2.9762 18 1 4.0503 -7.3517 -3.0848 19 1 5.2263 -5.6393 -4.3360 20 1 6.1127 -6.4170 -2.2171 21 6 2.9712 -3.9840 1.4423 22 17 1.9789 -2.7090 2.2427 23 7 2.1546 -1.1491 -0.0055 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6408 2.1372 -0.0004 28 1 4.5260 2.8133 -1.0289 29 1 3.7624 3.2687 0.5130 30 1 5.2918 2.3580 0.5120 31 1 2.6963 -3.2329 -2.3126 32 1 2.4228 -4.9259 1.4444 33 1 3.9087 -4.1082 1.9842 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226092213.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:38 Heat of formation + Delta-G solvation = -0.785736 kcal Electronic energy + Delta-G solvation = -19701.012317 eV Core-core repulsion = 16559.665489 eV Total energy + Delta-G solvation = -3141.346828 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.34002 -37.68769 -36.19829 -35.11577 -33.76263 -33.52829 -31.54824 -29.84276 -28.21460 -27.30643 -24.86567 -23.00349 -22.06865 -20.73098 -18.57196 -17.71002 -16.87353 -16.38678 -15.33465 -14.28780 -14.17210 -14.07887 -13.87248 -13.57529 -13.37606 -13.13585 -12.83847 -12.70574 -12.60502 -12.26370 -12.17807 -12.13844 -11.94058 -11.67736 -11.50636 -11.01297 -10.97255 -10.44298 -10.27414 -9.77906 -9.67759 -9.20505 -9.16979 -8.85357 -8.62550 -7.80496 -6.78180 -4.62565 1.03341 1.67252 3.01790 3.14560 3.25300 3.33980 3.42893 3.48583 3.80398 4.26136 4.26924 4.30410 4.65834 4.76545 5.01233 5.29710 5.34649 5.46682 5.51735 5.61051 5.70469 5.76791 5.81224 5.85736 5.91350 6.15555 6.18834 6.24029 6.37293 6.69979 6.89021 7.51152 7.96071 8.00791 8.22360 8.41986 8.42271 9.17888 10.59166 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.015144 B = 0.007310 C = 0.006209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.502510 B = 3829.637291 C = 4508.308741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.203 3.797 3 C -0.239 4.239 4 C 0.036 3.964 5 C -0.119 4.119 6 C -0.144 4.144 7 C 0.283 3.717 8 N -0.437 5.437 9 C 0.398 3.602 10 O -0.297 6.297 11 C 0.179 3.821 12 H 0.077 0.923 13 C -0.597 4.597 14 H 0.065 0.935 15 C 0.037 3.963 16 N -0.872 5.872 17 Si 1.077 2.923 18 H -0.281 1.281 19 H -0.280 1.280 20 H -0.283 1.283 21 C -0.026 4.026 22 Cl -0.210 7.210 23 N -0.517 5.517 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.136 0.864 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.278 0.722 32 H 0.098 0.902 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.492 9.091 5.304 11.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.063 3.937 3 C -0.260 4.260 4 C 0.027 3.973 5 C -0.176 4.176 6 C -0.152 4.152 7 C -0.032 4.032 8 N -0.114 5.114 9 C 0.216 3.784 10 O -0.201 6.201 11 C 0.126 3.874 12 H 0.094 0.906 13 C -0.633 4.633 14 H 0.083 0.917 15 C -0.173 4.173 16 N -0.505 5.505 17 Si 0.902 3.098 18 H -0.207 1.207 19 H -0.205 1.205 20 H -0.209 1.209 21 C -0.089 4.089 22 Cl -0.184 7.184 23 N -0.242 5.242 24 H 0.100 0.900 25 H 0.099 0.901 26 H 0.092 0.908 27 H 0.154 0.846 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.116 0.884 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.706 7.539 3.889 9.257 hybrid contribution -0.395 1.362 1.628 2.159 sum -4.100 8.900 5.517 11.246 Atomic orbital electron populations 1.20776 0.88913 1.03436 1.03263 1.21149 0.96717 0.87449 0.88428 1.21366 0.93070 0.99164 1.12413 1.19988 0.93722 0.93053 0.90546 1.20874 0.99924 0.93498 1.03270 1.15914 0.85521 0.92811 1.20920 1.25066 0.92063 0.93070 0.92979 1.81118 1.11953 1.07833 1.10513 1.20162 0.87047 0.87212 0.83976 1.86906 1.39127 1.11492 1.82623 1.20809 0.94376 0.81596 0.90625 0.90573 1.21938 1.37979 1.08862 0.94560 0.91702 1.26177 0.95201 1.01127 0.94816 1.70741 1.24575 1.14786 1.40409 0.83444 0.75780 0.74523 0.76021 1.20726 1.20481 1.20873 1.25105 0.95873 0.91441 0.96481 1.98664 1.75641 1.60583 1.83499 1.67554 1.07589 1.29296 1.19767 0.90003 0.90109 0.90796 0.84620 0.89962 0.90321 0.91246 0.90993 0.88397 0.90038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.16 36.00 0.37 -0.89 16 2 C 0.20 3.15 6.78 -82.53 -0.56 2.59 16 3 C -0.24 -3.21 9.41 -39.50 -0.37 -3.58 16 4 C 0.04 0.54 5.95 -103.92 -0.62 -0.08 16 5 C -0.12 -1.32 9.68 36.01 0.35 -0.97 16 6 C -0.14 -2.73 5.77 -106.53 -0.61 -3.35 16 7 C 0.28 5.70 13.51 -22.47 -0.30 5.40 16 8 N -0.44 -9.26 18.54 41.84 0.78 -8.49 16 9 C 0.40 8.48 6.67 -16.61 -0.11 8.37 16 10 O -0.30 -7.27 9.18 -18.12 -0.17 -7.44 16 11 C 0.18 4.31 1.96 -27.88 -0.05 4.25 16 12 H 0.08 1.95 5.53 -51.93 -0.29 1.66 16 13 C -0.60 -15.75 8.69 -34.44 -0.30 -16.05 16 14 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 15 C 0.04 1.00 5.46 -17.82 -0.10 0.90 16 16 N -0.87 -24.83 13.62 55.43 0.75 -24.08 16 17 Si 1.08 23.80 29.91 -169.99 -5.08 18.72 16 18 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 21 C -0.03 -0.53 6.31 37.16 0.23 -0.30 16 22 Cl -0.21 -3.95 25.96 -51.86 -1.35 -5.29 16 23 N -0.52 -10.07 6.27 -9.20 -0.06 -10.13 16 24 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.07 0.65 8.07 -51.93 -0.42 0.23 16 27 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 30 H 0.07 0.83 7.19 -51.93 -0.37 0.45 16 31 H 0.28 7.98 6.67 -40.82 -0.27 7.71 16 32 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 33 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 307.27 15.07 4.63 4.63 Total: -1.00 -30.03 307.27 -6.09 -36.12 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -3.51 Total: -0.34 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -2.08 Total: -3.70 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: 1.47 Total: -42.69 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -0.17 Total: -7.44 kcal Atomic # 14 Polarization: 23.80 SS G_CDS: -5.08 Total: 18.72 kcal Atomic # 17 Polarization: -3.95 SS G_CDS: -1.35 Total: -5.29 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.03 -6.09 -36.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226092213.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.332 kcal (2) G-P(sol) polarization free energy of solvation -30.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds