Wall clock time and date at job start Tue Mar 31 2020 02:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38321 * 119.40368 * 2 1 4 4 C 1.38368 * 119.45641 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.82626 * 179.97438 * 4 3 2 6 6 C 1.39984 * 118.34875 * 359.97438 * 4 3 2 7 7 C 1.43200 * 120.60191 * 180.02562 * 6 4 3 8 8 N 4.80306 * 135.07513 * 0.02562 * 3 1 2 9 9 C 1.40320 * 118.79903 * 0.02562 * 6 4 3 10 10 O 1.35477 * 119.80317 * 179.97438 * 9 6 4 11 11 C 1.42895 * 117.00211 * 179.97438 * 10 9 6 12 12 H 1.08998 * 109.47031 * 30.00513 * 11 10 9 13 13 C 1.50698 * 109.47018 * 150.00406 * 11 10 9 14 14 H 1.08002 * 120.00082 * 95.12512 * 13 11 10 15 15 C 1.37880 * 119.99885 * 275.12079 * 13 11 10 16 16 N 1.31510 * 120.00183 * 355.67744 * 15 13 11 17 17 Si 1.86803 * 120.00035 * 175.67291 * 15 13 11 18 18 H 1.48500 * 109.46897 * 90.00042 * 17 15 13 19 19 H 1.48503 * 109.47264 * 210.00345 * 17 15 13 20 20 H 1.48497 * 109.47348 * 330.00529 * 17 15 13 21 21 C 1.52999 * 109.47548 * 270.00162 * 11 10 9 22 22 Cl 1.80303 * 109.46934 * 65.71789 * 21 11 10 23 23 N 1.31906 * 119.40486 * 180.27404 * 2 1 3 24 24 H 1.09001 * 109.47211 * 90.00126 * 1 2 3 25 25 H 1.08999 * 109.47231 * 210.00155 * 1 2 3 26 26 H 1.09000 * 109.47602 * 330.00277 * 1 2 3 27 27 H 1.07998 * 120.27031 * 359.97438 * 3 2 1 28 28 H 1.08998 * 109.47187 * 270.02024 * 5 4 3 29 29 H 1.08997 * 109.47463 * 30.01718 * 5 4 3 30 30 H 1.08998 * 109.47588 * 150.02286 * 5 4 3 31 31 H 0.97003 * 120.00032 * 5.55698 * 16 15 13 32 32 H 1.08991 * 109.47493 * 185.71950 * 21 11 10 33 33 H 1.09001 * 109.47092 * 305.72206 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1861 1.2050 0.0000 4 6 3.5697 1.2063 -0.0005 5 6 4.3408 2.5011 -0.0011 6 6 4.2356 -0.0250 -0.0005 7 6 5.6665 -0.0800 -0.0005 8 7 6.8017 -0.1237 -0.0015 9 6 3.4755 -1.2045 -0.0005 10 8 4.0989 -2.4073 -0.0010 11 6 3.2670 -3.5692 -0.0004 12 1 2.3316 -3.3466 -0.5136 13 6 3.9746 -4.6939 -0.7113 14 1 4.5420 -5.4181 -0.1455 15 6 3.8975 -4.7985 -2.0839 16 7 3.1383 -3.9684 -2.7651 17 14 4.8716 -6.1193 -2.9762 18 1 4.0503 -7.3517 -3.0848 19 1 5.2263 -5.6393 -4.3360 20 1 6.1127 -6.4170 -2.2171 21 6 2.9712 -3.9840 1.4423 22 17 1.9789 -2.7090 2.2427 23 7 2.1546 -1.1491 -0.0055 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6408 2.1372 -0.0004 28 1 4.5260 2.8133 -1.0289 29 1 3.7624 3.2687 0.5130 30 1 5.2918 2.3580 0.5120 31 1 2.6963 -3.2329 -2.3126 32 1 2.4228 -4.9259 1.4444 33 1 3.9087 -4.1082 1.9842 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226092213.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:38 Heat of formation + Delta-G solvation = -18.851302 kcal Electronic energy + Delta-G solvation = -19701.795698 eV Core-core repulsion = 16559.665489 eV Total energy + Delta-G solvation = -3142.130209 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.73465 -39.30383 -37.73912 -36.69877 -35.43275 -34.99145 -32.96822 -31.52109 -29.44887 -28.31995 -26.79823 -24.53138 -23.54519 -22.15082 -20.09213 -19.37905 -18.53708 -17.81791 -16.90497 -15.93473 -15.77062 -15.50976 -15.37476 -14.98797 -14.59224 -14.52542 -14.08542 -14.08404 -13.98199 -13.85698 -13.59312 -13.43763 -13.29271 -13.00161 -12.74208 -12.61956 -12.48106 -12.14654 -11.99295 -11.33639 -11.25557 -11.00861 -10.66542 -10.41129 -10.26661 -9.24491 -8.87209 -6.71402 -0.29995 0.39709 1.38634 1.48232 1.57111 1.58490 1.75433 1.94068 2.21427 2.48952 2.85797 2.88886 3.13481 3.42889 3.67901 3.92128 4.10120 4.18448 4.19673 4.40836 4.49716 4.60752 4.70401 4.75478 4.87402 4.89992 5.02657 5.08022 5.20866 5.26651 5.58829 5.65946 5.93571 6.29633 6.39616 6.63396 7.03162 7.16963 8.49948 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.015144 B = 0.007310 C = 0.006209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.502510 B = 3829.637291 C = 4508.308741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.188 3.812 3 C -0.215 4.215 4 C 0.043 3.957 5 C -0.117 4.117 6 C -0.168 4.168 7 C 0.291 3.709 8 N -0.469 5.469 9 C 0.368 3.632 10 O -0.328 6.328 11 C 0.185 3.815 12 H 0.055 0.945 13 C -0.616 4.616 14 H 0.064 0.936 15 C -0.008 4.008 16 N -0.902 5.902 17 Si 1.118 2.882 18 H -0.259 1.259 19 H -0.284 1.284 20 H -0.273 1.273 21 C -0.021 4.021 22 Cl -0.192 7.192 23 N -0.542 5.542 24 H 0.092 0.908 25 H 0.065 0.935 26 H 0.114 0.886 27 H 0.189 0.811 28 H 0.096 0.904 29 H 0.117 0.883 30 H 0.057 0.943 31 H 0.265 0.735 32 H 0.108 0.892 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.780 11.146 5.819 14.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.049 3.951 3 C -0.235 4.235 4 C 0.034 3.966 5 C -0.173 4.173 6 C -0.176 4.176 7 C -0.022 4.022 8 N -0.146 5.146 9 C 0.187 3.813 10 O -0.234 6.234 11 C 0.131 3.869 12 H 0.073 0.927 13 C -0.652 4.652 14 H 0.082 0.918 15 C -0.212 4.212 16 N -0.537 5.537 17 Si 0.938 3.062 18 H -0.183 1.183 19 H -0.209 1.209 20 H -0.198 1.198 21 C -0.084 4.084 22 Cl -0.165 7.165 23 N -0.267 5.267 24 H 0.110 0.890 25 H 0.084 0.916 26 H 0.132 0.868 27 H 0.206 0.794 28 H 0.114 0.886 29 H 0.136 0.864 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.127 0.873 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.021 9.619 4.428 11.719 hybrid contribution -0.123 0.932 1.558 1.819 sum -5.144 10.551 5.986 13.176 Atomic orbital electron populations 1.20906 0.86162 1.04698 1.04261 1.21965 0.98567 0.87260 0.87330 1.21916 0.92476 1.00328 1.08745 1.20495 0.94640 0.92864 0.88632 1.20999 0.99487 0.92282 1.04509 1.16209 0.84749 0.93835 1.22767 1.25416 0.92485 0.92209 0.92124 1.81096 1.12779 1.08822 1.11932 1.20283 0.88184 0.86452 0.86403 1.86704 1.39622 1.12812 1.84289 1.20537 0.92931 0.81251 0.92168 0.92695 1.22270 1.37835 1.10090 0.95045 0.91820 1.27497 0.95237 1.02409 0.96075 1.70847 1.26699 1.15660 1.40454 0.82938 0.75262 0.73246 0.74759 1.18324 1.20926 1.19827 1.24877 0.96542 0.92173 0.94832 1.98654 1.75036 1.59983 1.82872 1.67519 1.06856 1.31687 1.20660 0.88964 0.91606 0.86768 0.79419 0.88575 0.86433 0.92423 0.92449 0.87332 0.89844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.11 10.16 71.23 0.72 -1.39 16 2 C 0.19 5.38 6.78 42.57 0.29 5.67 16 3 C -0.21 -4.85 9.41 22.32 0.21 -4.64 16 4 C 0.04 1.16 5.95 -19.41 -0.12 1.04 16 5 C -0.12 -2.16 9.68 71.24 0.69 -1.47 16 6 C -0.17 -6.34 5.77 -21.10 -0.12 -6.46 16 7 C 0.29 11.95 13.51 88.33 1.19 13.14 16 8 N -0.47 -20.29 18.54 19.00 0.35 -19.94 16 9 C 0.37 15.98 6.67 85.14 0.57 16.54 16 10 O -0.33 -16.71 9.18 -87.76 -0.81 -17.51 16 11 C 0.18 9.22 1.96 29.85 0.06 9.28 16 12 H 0.06 2.95 5.53 -2.39 -0.01 2.94 16 13 C -0.62 -33.53 8.69 25.60 0.22 -33.31 16 14 H 0.06 3.37 7.81 -2.91 -0.02 3.34 16 15 C -0.01 -0.46 5.46 84.66 0.46 0.00 16 16 N -0.90 -53.17 13.62 21.45 0.29 -52.88 16 17 Si 1.12 48.56 29.91 68.60 2.05 50.61 16 18 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 21 C -0.02 -0.88 6.31 71.98 0.45 -0.43 16 22 Cl -0.19 -7.16 25.96 -2.72 -0.07 -7.23 16 23 N -0.54 -21.05 6.27 -296.01 -1.86 -22.90 16 24 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.11 1.41 8.07 -2.39 -0.02 1.39 16 27 H 0.19 2.30 8.06 -2.91 -0.02 2.28 16 28 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.12 1.29 8.10 -2.39 -0.02 1.27 16 30 H 0.06 1.24 7.19 -2.39 -0.02 1.22 16 31 H 0.26 15.93 6.67 -92.71 -0.62 15.31 16 32 H 0.11 4.19 8.14 -2.39 -0.02 4.17 16 33 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 Total: -1.00 -69.42 307.27 5.89 -63.53 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: 1.29 Total: 8.34 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 4.63 Total: -2.02 kcal Atomic # 7 Polarization: -94.51 SS G_CDS: -1.21 Total: -95.73 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.81 Total: -17.51 kcal Atomic # 14 Polarization: 48.56 SS G_CDS: 2.05 Total: 50.61 kcal Atomic # 17 Polarization: -7.16 SS G_CDS: -0.07 Total: -7.23 kcal Total: -69.42 5.89 -63.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226092213.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.678 kcal (2) G-P(sol) polarization free energy of solvation -69.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds