Wall clock time and date at job start Tue Mar 31 2020 01:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38718 * 119.78534 * 2 1 4 4 C 1.37668 * 120.50803 * 179.64939 * 3 2 1 5 5 C 1.39706 * 119.76863 * 0.55756 * 4 3 2 6 6 N 1.35906 * 133.44103 * 179.34094 * 5 4 3 7 7 C 1.30756 * 109.62211 * 180.02562 * 6 5 4 8 8 O 1.35281 * 125.03466 * 180.02562 * 7 6 5 9 9 C 1.42908 * 116.99911 * 359.97438 * 8 7 6 10 10 H 1.08999 * 109.46901 * 30.00086 * 9 8 7 11 11 C 1.50698 * 109.47122 * 149.99844 * 9 8 7 12 12 H 1.07998 * 119.99681 * 0.02562 * 11 9 8 13 13 C 1.37875 * 119.99826 * 180.02562 * 11 9 8 14 14 N 1.31515 * 120.00203 * 0.02562 * 13 11 9 15 15 Si 1.86807 * 119.99978 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46995 * 89.99952 * 15 13 11 17 17 H 1.48500 * 109.47253 * 210.00091 * 15 13 11 18 18 H 1.48501 * 109.46886 * 330.00451 * 15 13 11 19 19 C 1.53000 * 109.47112 * 270.00079 * 9 8 7 20 20 Cl 1.80299 * 109.46974 * 65.00109 * 19 9 8 21 21 N 1.36387 * 109.93816 * 359.97438 * 7 6 5 22 22 H 0.97001 * 126.36547 * 179.97438 * 21 7 6 23 23 C 1.38452 * 107.26545 * 0.22724 * 21 7 6 24 24 C 1.37932 * 119.78252 * 180.02562 * 2 1 3 25 25 H 1.08999 * 109.46831 * 269.97821 * 1 2 3 26 26 H 1.08989 * 109.47057 * 29.98047 * 1 2 3 27 27 H 1.08999 * 109.47183 * 149.98534 * 1 2 3 28 28 H 1.08007 * 119.74601 * 0.02562 * 3 2 1 29 29 H 1.07998 * 120.11475 * 179.91350 * 4 3 2 30 30 H 0.96998 * 120.00165 * 180.02562 * 14 13 11 31 31 H 1.08996 * 109.47107 * 184.99504 * 19 9 8 32 32 H 1.08997 * 109.47080 * 305.00091 * 19 9 8 33 33 H 1.08002 * 120.07875 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.2039 0.0000 4 6 3.5726 1.2213 0.0073 5 6 4.2816 0.0175 0.0029 6 7 5.6061 -0.2870 -0.0036 7 6 5.7580 -1.5857 -0.0060 8 8 6.9485 -2.2283 -0.0119 9 6 8.1242 -1.4160 -0.0162 10 1 7.9195 -0.4777 0.4994 11 6 9.2400 -2.1434 0.6886 12 1 9.0686 -3.1278 1.0985 13 6 10.4796 -1.5522 0.8101 14 7 10.6882 -0.3533 0.3114 15 14 11.8630 -2.4542 1.6832 16 1 12.6224 -3.2671 0.6994 17 1 12.7736 -1.4680 2.3184 18 1 11.2928 -3.3447 2.7259 19 6 8.5374 -1.1247 -1.4603 20 17 7.2657 -0.1275 -2.2598 21 7 4.5387 -2.1967 -0.0006 22 1 4.3744 -3.1527 -0.0013 23 6 3.5790 -1.1987 0.0003 24 6 2.1921 -1.1971 -0.0005 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8901 -0.5135 27 1 -0.3633 -0.8898 -0.5141 28 1 1.6484 2.1348 0.0004 29 1 4.1027 2.1623 0.0058 30 1 11.5604 0.0624 0.3966 31 1 9.4820 -0.5808 -1.4652 32 1 8.6560 -2.0638 -2.0007 33 1 1.6499 -2.1312 -0.0005 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226507327.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:23 Heat of formation + Delta-G solvation = 18.875100 kcal Electronic energy + Delta-G solvation = -19203.314852 eV Core-core repulsion = 16062.820582 eV Total energy + Delta-G solvation = -3140.494270 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.58742 -38.27218 -36.79504 -34.65261 -33.43361 -32.84588 -30.85626 -29.84457 -29.04646 -25.84845 -25.31271 -22.85156 -21.76808 -21.13255 -20.18793 -18.07393 -17.16452 -16.27541 -16.22535 -15.49406 -14.93598 -14.52674 -14.00815 -13.80279 -13.62459 -13.36626 -13.16721 -12.77738 -12.18495 -12.00271 -11.90834 -11.58325 -11.26103 -11.12909 -11.12473 -10.96139 -10.55143 -10.34415 -10.19790 -9.74003 -9.35901 -9.16459 -8.90557 -8.65837 -8.00081 -7.24938 -6.43279 -4.53050 1.36527 1.80510 2.65622 3.12407 3.20028 3.24174 3.36255 3.54349 4.10243 4.22761 4.47498 4.76728 4.92840 5.03744 5.16085 5.32931 5.57653 5.61593 5.68151 5.81793 5.86768 6.08185 6.22926 6.29808 6.32904 6.49615 6.78610 6.80845 6.94607 7.13395 7.25436 7.38307 7.56247 7.71258 8.24244 8.43454 8.66790 9.14047 10.63505 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.030993 B = 0.004575 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.220087 B = 6118.954646 C = 6459.493639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.097 4.097 3 C -0.126 4.126 4 C -0.076 4.076 5 C 0.082 3.918 6 N -0.513 5.513 7 C 0.493 3.507 8 O -0.299 6.299 9 C 0.228 3.772 10 H 0.070 0.930 11 C -0.529 4.529 12 H 0.075 0.925 13 C 0.067 3.933 14 N -0.882 5.882 15 Si 0.919 3.081 16 H -0.276 1.276 17 H -0.281 1.281 18 H -0.270 1.270 19 C -0.038 4.038 20 Cl -0.225 7.225 21 N -0.602 5.602 22 H 0.420 0.580 23 C 0.039 3.961 24 C -0.105 4.105 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.122 0.878 29 H 0.126 0.874 30 H 0.273 0.727 31 H 0.134 0.866 32 H 0.069 0.931 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.779 -0.860 -1.170 13.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.099 4.099 3 C -0.146 4.146 4 C -0.095 4.095 5 C -0.037 4.037 6 N -0.250 5.250 7 C 0.190 3.810 8 O -0.201 6.201 9 C 0.173 3.827 10 H 0.087 0.913 11 C -0.567 4.567 12 H 0.094 0.906 13 C -0.137 4.137 14 N -0.519 5.519 15 Si 0.745 3.255 16 H -0.201 1.201 17 H -0.207 1.207 18 H -0.194 1.194 19 C -0.101 4.101 20 Cl -0.199 7.199 21 N -0.224 5.224 22 H 0.258 0.742 23 C -0.069 4.069 24 C -0.126 4.126 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.140 0.860 29 H 0.144 0.856 30 H 0.083 0.917 31 H 0.152 0.848 32 H 0.087 0.913 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.872 -0.281 -1.250 12.936 hybrid contribution 0.247 -1.430 0.246 1.472 sum -12.625 -1.712 -1.004 12.780 Atomic orbital electron populations 1.20663 0.91242 1.02293 1.01845 1.19388 0.95407 0.92192 1.02878 1.20640 0.93249 0.97206 1.03509 1.20180 0.92923 0.95773 1.00660 1.18949 0.89267 0.92790 1.02646 1.71140 1.16010 1.08853 1.29035 1.21013 0.82367 0.85391 0.92216 1.85976 1.10477 1.36911 1.86765 1.20654 0.77254 0.92684 0.92107 0.91255 1.20973 0.93970 1.04507 1.37267 0.90642 1.24952 0.98609 0.94967 0.95210 1.69826 1.24331 1.13770 1.43928 0.86147 0.80531 0.79208 0.79620 1.20138 1.20652 1.19438 1.25583 0.93839 0.95590 0.95101 1.98658 1.61141 1.76101 1.83997 1.42438 1.03806 1.09069 1.67131 0.74203 1.18545 0.90931 0.88705 1.08689 1.19596 0.89194 0.98041 1.05747 0.91644 0.91741 0.92062 0.85980 0.85570 0.91690 0.84799 0.91280 0.86633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.92 10.00 36.01 0.36 -0.56 16 2 C -0.10 -1.22 5.88 -104.56 -0.62 -1.83 16 3 C -0.13 -1.67 9.66 -39.61 -0.38 -2.05 16 4 C -0.08 -1.23 10.10 -39.24 -0.40 -1.63 16 5 C 0.08 1.59 7.22 -84.68 -0.61 0.98 16 6 N -0.51 -11.34 8.10 -12.24 -0.10 -11.44 16 7 C 0.49 10.48 7.92 -88.92 -0.70 9.77 16 8 O -0.30 -6.91 9.80 -17.53 -0.17 -7.08 16 9 C 0.23 5.70 2.28 -27.88 -0.06 5.64 16 10 H 0.07 1.93 7.24 -51.93 -0.38 1.55 16 11 C -0.53 -13.81 8.89 -34.44 -0.31 -14.11 16 12 H 0.08 1.95 7.81 -52.49 -0.41 1.54 16 13 C 0.07 1.70 5.29 -17.82 -0.09 1.61 16 14 N -0.88 -23.28 11.30 55.43 0.63 -22.65 16 15 Si 0.92 19.81 29.54 -169.99 -5.02 14.79 16 16 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 17 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 18 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 19 C -0.04 -0.90 6.17 37.16 0.23 -0.67 16 20 Cl -0.22 -5.03 26.10 -51.86 -1.35 -6.39 16 21 N -0.60 -10.33 6.26 -11.90 -0.07 -10.41 16 22 H 0.42 5.68 8.96 -40.82 -0.37 5.31 16 23 C 0.04 0.66 7.30 -83.87 -0.61 0.05 16 24 C -0.10 -1.44 9.70 -39.53 -0.38 -1.82 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.50 8.08 -51.94 -0.42 0.08 16 27 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 28 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 29 H 0.13 1.94 8.06 -52.49 -0.42 1.52 16 30 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 31 H 0.13 3.38 5.96 -51.93 -0.31 3.07 16 32 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 33 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 297.74 15.07 4.49 4.49 Total: -1.00 -28.51 297.74 -8.74 -37.24 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -3.55 Total: 6.09 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -3.58 Total: -4.64 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.45 Total: -44.50 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -0.17 Total: -7.08 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Atomic # 17 Polarization: -5.03 SS G_CDS: -1.35 Total: -6.39 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.51 -8.74 -37.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226507327.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.119 kcal (2) G-P(sol) polarization free energy of solvation -28.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds