Wall clock time and date at job start Tue Mar 31 2020 01:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38718 * 119.78534 * 2 1 4 4 C 1.37668 * 120.50803 * 179.64939 * 3 2 1 5 5 C 1.39706 * 119.76863 * 0.55756 * 4 3 2 6 6 N 1.35906 * 133.44103 * 179.34094 * 5 4 3 7 7 C 1.30756 * 109.62211 * 180.02562 * 6 5 4 8 8 O 1.35281 * 125.03466 * 180.02562 * 7 6 5 9 9 C 1.42908 * 116.99911 * 359.97438 * 8 7 6 10 10 H 1.08999 * 109.46901 * 30.00086 * 9 8 7 11 11 C 1.50698 * 109.47122 * 149.99844 * 9 8 7 12 12 H 1.07998 * 119.99681 * 0.02562 * 11 9 8 13 13 C 1.37875 * 119.99826 * 180.02562 * 11 9 8 14 14 N 1.31515 * 120.00203 * 0.02562 * 13 11 9 15 15 Si 1.86807 * 119.99978 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46995 * 89.99952 * 15 13 11 17 17 H 1.48500 * 109.47253 * 210.00091 * 15 13 11 18 18 H 1.48501 * 109.46886 * 330.00451 * 15 13 11 19 19 C 1.53000 * 109.47112 * 270.00079 * 9 8 7 20 20 Cl 1.80299 * 109.46974 * 65.00109 * 19 9 8 21 21 N 1.36387 * 109.93816 * 359.97438 * 7 6 5 22 22 H 0.97001 * 126.36547 * 179.97438 * 21 7 6 23 23 C 1.38452 * 107.26545 * 0.22724 * 21 7 6 24 24 C 1.37932 * 119.78252 * 180.02562 * 2 1 3 25 25 H 1.08999 * 109.46831 * 269.97821 * 1 2 3 26 26 H 1.08989 * 109.47057 * 29.98047 * 1 2 3 27 27 H 1.08999 * 109.47183 * 149.98534 * 1 2 3 28 28 H 1.08007 * 119.74601 * 0.02562 * 3 2 1 29 29 H 1.07998 * 120.11475 * 179.91350 * 4 3 2 30 30 H 0.96998 * 120.00165 * 180.02562 * 14 13 11 31 31 H 1.08996 * 109.47107 * 184.99504 * 19 9 8 32 32 H 1.08997 * 109.47080 * 305.00091 * 19 9 8 33 33 H 1.08002 * 120.07875 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.2039 0.0000 4 6 3.5726 1.2213 0.0073 5 6 4.2816 0.0175 0.0029 6 7 5.6061 -0.2870 -0.0036 7 6 5.7580 -1.5857 -0.0060 8 8 6.9485 -2.2283 -0.0119 9 6 8.1242 -1.4160 -0.0162 10 1 7.9195 -0.4777 0.4994 11 6 9.2400 -2.1434 0.6886 12 1 9.0686 -3.1278 1.0985 13 6 10.4796 -1.5522 0.8101 14 7 10.6882 -0.3533 0.3114 15 14 11.8630 -2.4542 1.6832 16 1 12.6224 -3.2671 0.6994 17 1 12.7736 -1.4680 2.3184 18 1 11.2928 -3.3447 2.7259 19 6 8.5374 -1.1247 -1.4603 20 17 7.2657 -0.1275 -2.2598 21 7 4.5387 -2.1967 -0.0006 22 1 4.3744 -3.1527 -0.0013 23 6 3.5790 -1.1987 0.0003 24 6 2.1921 -1.1971 -0.0005 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8901 -0.5135 27 1 -0.3633 -0.8898 -0.5141 28 1 1.6484 2.1348 0.0004 29 1 4.1027 2.1623 0.0058 30 1 11.5604 0.0624 0.3966 31 1 9.4820 -0.5808 -1.4652 32 1 8.6560 -2.0638 -2.0007 33 1 1.6499 -2.1312 -0.0005 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226507327.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:22 Heat of formation + Delta-G solvation = 1.173544 kcal Electronic energy + Delta-G solvation = -19204.082449 eV Core-core repulsion = 16062.820582 eV Total energy + Delta-G solvation = -3141.261867 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.96549 -39.84281 -38.11339 -36.49269 -35.35524 -34.18586 -32.01040 -31.52144 -30.45778 -27.34415 -26.86455 -24.37815 -23.21880 -22.38395 -21.77011 -19.58055 -18.86152 -17.91620 -17.61070 -17.06079 -16.67590 -15.72198 -15.49918 -15.23822 -14.99517 -14.76379 -14.47846 -14.13683 -13.84206 -13.56863 -13.04337 -12.95524 -12.88501 -12.68804 -12.58867 -12.29226 -12.15384 -11.89646 -11.77744 -11.45099 -11.17747 -10.80699 -10.68157 -10.47082 -9.22045 -8.62413 -8.38223 -6.57147 0.12526 0.61640 1.16688 1.42100 1.44206 1.56313 1.67523 1.94591 2.32830 2.92163 2.97113 3.05028 3.45334 3.94950 4.11222 4.30205 4.35156 4.38023 4.46604 4.51482 4.76225 4.82944 4.93616 5.00118 5.12816 5.21000 5.32636 5.36719 5.51708 5.63309 5.72966 5.75444 5.96283 6.11383 6.51952 6.73664 7.04790 7.17037 8.68705 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.030993 B = 0.004575 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.220087 B = 6118.954646 C = 6459.493639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.083 4.083 3 C -0.116 4.116 4 C -0.094 4.094 5 C 0.033 3.967 6 N -0.545 5.545 7 C 0.462 3.538 8 O -0.308 6.308 9 C 0.238 3.762 10 H 0.032 0.968 11 C -0.554 4.554 12 H 0.072 0.928 13 C 0.027 3.973 14 N -0.908 5.908 15 Si 0.985 3.015 16 H -0.265 1.265 17 H -0.277 1.277 18 H -0.267 1.267 19 C -0.028 4.028 20 Cl -0.214 7.214 21 N -0.586 5.586 22 H 0.434 0.566 23 C 0.035 3.965 24 C -0.107 4.107 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.157 0.843 29 H 0.123 0.877 30 H 0.277 0.723 31 H 0.118 0.882 32 H 0.077 0.923 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.166 -1.355 -1.038 16.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.085 4.085 3 C -0.136 4.136 4 C -0.114 4.114 5 C -0.084 4.084 6 N -0.283 5.283 7 C 0.158 3.842 8 O -0.212 6.212 9 C 0.183 3.817 10 H 0.050 0.950 11 C -0.591 4.591 12 H 0.091 0.909 13 C -0.175 4.175 14 N -0.544 5.544 15 Si 0.808 3.192 16 H -0.190 1.190 17 H -0.202 1.202 18 H -0.192 1.192 19 C -0.091 4.091 20 Cl -0.188 7.188 21 N -0.210 5.210 22 H 0.276 0.724 23 C -0.073 4.073 24 C -0.128 4.128 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.174 0.826 29 H 0.141 0.859 30 H 0.086 0.914 31 H 0.135 0.865 32 H 0.095 0.905 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -15.310 -0.778 -1.128 15.372 hybrid contribution 0.723 -1.146 0.195 1.369 sum -14.588 -1.924 -0.932 14.744 Atomic orbital electron populations 1.20768 0.87834 1.03958 1.03317 1.19972 0.97697 0.91278 0.99510 1.21077 0.91994 0.99244 1.01239 1.20420 0.94400 0.94902 1.01694 1.19368 0.88641 0.94894 1.05535 1.70961 1.18393 1.09777 1.29145 1.20945 0.82526 0.85869 0.94818 1.85879 1.10903 1.36699 1.87712 1.20263 0.77970 0.91229 0.92256 0.95002 1.21224 0.94934 1.04682 1.38292 0.90942 1.25800 1.00643 0.95569 0.95502 1.69932 1.25045 1.14968 1.44503 0.85135 0.77374 0.78078 0.78602 1.19017 1.20188 1.19155 1.25311 0.93284 0.95743 0.94801 1.98652 1.60626 1.75863 1.83662 1.42279 1.02483 1.09932 1.66305 0.72432 1.18911 0.92005 0.87614 1.08749 1.20051 0.87711 1.00136 1.04916 0.90059 0.90077 0.90558 0.82564 0.85905 0.91359 0.86455 0.90461 0.83426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.29 10.00 71.24 0.71 -0.57 16 2 C -0.08 -1.77 5.88 -19.82 -0.12 -1.89 16 3 C -0.12 -2.75 9.66 22.25 0.21 -2.53 16 4 C -0.09 -3.06 10.10 22.49 0.23 -2.83 16 5 C 0.03 1.30 7.22 39.41 0.28 1.58 16 6 N -0.54 -25.20 8.10 -306.46 -2.48 -27.68 16 7 C 0.46 20.41 7.92 179.75 1.42 21.84 16 8 O -0.31 -14.90 9.80 -85.66 -0.84 -15.74 16 9 C 0.24 12.50 2.28 29.85 0.07 12.57 16 10 H 0.03 1.90 7.24 -2.39 -0.02 1.88 16 11 C -0.55 -29.81 8.89 25.60 0.23 -29.58 16 12 H 0.07 3.84 7.81 -2.91 -0.02 3.82 16 13 C 0.03 1.37 5.29 84.65 0.45 1.82 16 14 N -0.91 -49.10 11.30 21.45 0.24 -48.86 16 15 Si 0.99 40.75 29.54 68.60 2.03 42.78 16 16 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 17 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 18 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 19 C -0.03 -1.39 6.17 71.98 0.44 -0.94 16 20 Cl -0.21 -9.87 26.10 -2.72 -0.07 -9.95 16 21 N -0.59 -20.24 6.26 -302.47 -1.89 -22.13 16 22 H 0.43 11.61 8.96 -92.71 -0.83 10.78 16 23 C 0.03 1.15 7.30 38.74 0.28 1.43 16 24 C -0.11 -2.64 9.70 22.31 0.22 -2.42 16 25 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.08 0.81 8.08 -2.39 -0.02 0.79 16 27 H 0.08 0.80 8.08 -2.39 -0.02 0.78 16 28 H 0.16 2.61 8.06 -2.91 -0.02 2.58 16 29 H 0.12 3.89 8.06 -2.91 -0.02 3.87 16 30 H 0.28 14.01 8.31 -92.71 -0.77 13.23 16 31 H 0.12 6.16 5.96 -2.39 -0.01 6.15 16 32 H 0.08 3.59 8.14 -2.39 -0.02 3.57 16 33 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -64.31 297.74 1.73 -62.58 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 0.32 Total: 20.53 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 4.43 Total: -1.52 kcal Atomic # 7 Polarization: -94.54 SS G_CDS: -4.13 Total: -98.67 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.84 Total: -15.74 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Atomic # 17 Polarization: -9.87 SS G_CDS: -0.07 Total: -9.95 kcal Total: -64.31 1.73 -62.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226507327.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.749 kcal (2) G-P(sol) polarization free energy of solvation -64.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds