Wall clock time and date at job start Tue Mar 31 2020 01:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34104 * 126.04793 * 2 1 4 4 H 0.96993 * 125.04641 * 0.02562 * 3 2 1 5 5 N 1.39968 * 109.90513 * 179.97438 * 3 2 1 6 6 C 1.32020 * 108.95011 * 359.97438 * 5 3 2 7 7 C 1.38180 * 126.04871 * 179.97438 * 2 1 3 8 8 C 1.41269 * 134.77962 * 0.04321 * 7 2 1 9 9 C 1.35643 * 119.63335 * 180.22908 * 8 7 2 10 10 C 1.39627 * 121.78192 * 359.52350 * 9 8 7 11 11 C 1.36127 * 121.75116 * 0.46864 * 10 9 8 12 12 O 1.35857 * 120.24395 * 179.76114 * 11 10 9 13 13 C 1.42894 * 117.00076 * 356.66520 * 12 11 10 14 14 H 1.08995 * 109.47455 * 27.64007 * 13 12 11 15 15 C 1.50706 * 109.47064 * 147.63918 * 13 12 11 16 16 H 1.07990 * 120.00066 * 0.02562 * 15 13 12 17 17 C 1.37879 * 119.99988 * 179.97438 * 15 13 12 18 18 N 1.31520 * 119.99922 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 119.99947 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47049 * 60.00529 * 19 17 15 21 21 H 1.48498 * 109.46896 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47312 * 299.99991 * 19 17 15 23 23 C 1.53004 * 109.47223 * 267.63817 * 13 12 11 24 24 Cl 1.80299 * 109.46939 * 64.99927 * 23 13 12 25 25 H 1.09001 * 109.47501 * 270.02692 * 1 2 3 26 26 H 1.09004 * 109.47369 * 30.02443 * 1 2 3 27 27 H 1.09005 * 109.47491 * 150.02162 * 1 2 3 28 28 H 1.07998 * 120.18286 * 359.95524 * 8 7 2 29 29 H 1.08004 * 119.10791 * 179.72318 * 9 8 7 30 30 H 1.07997 * 119.12437 * 180.22656 * 10 9 8 31 31 H 0.96998 * 120.00078 * 179.97438 * 18 17 15 32 32 H 1.08995 * 109.46937 * 185.00001 * 23 13 12 33 33 H 1.08998 * 109.46727 * 305.00268 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2961 1.0843 0.0000 4 1 1.9818 2.0019 0.0004 5 7 3.6406 0.6951 0.0006 6 6 3.7053 -0.6235 0.0015 7 6 2.3201 -1.1172 0.0005 8 6 2.0949 -2.5118 0.0004 9 6 3.1520 -3.3619 0.0057 10 6 4.4689 -2.8978 0.0016 11 6 4.7598 -1.5680 0.0014 12 8 6.0526 -1.1503 0.0021 13 6 7.0606 -2.1604 0.0772 14 1 6.6808 -3.0857 -0.3558 15 6 8.2795 -1.7114 -0.6870 16 1 8.2840 -0.7507 -1.1802 17 6 9.3892 -2.5267 -0.7555 18 7 9.3839 -3.6965 -0.1544 19 14 10.8997 -1.9705 -1.7033 20 1 11.4171 -0.7094 -1.1142 21 1 11.9473 -3.0201 -1.6251 22 1 10.5355 -1.7402 -3.1244 23 6 7.4357 -2.3987 1.5413 24 17 6.0160 -3.0753 2.4229 25 1 -0.3634 0.0005 1.0276 26 1 -0.3634 0.8898 -0.5142 27 1 -0.3634 -0.8902 -0.5135 28 1 1.0868 -2.8991 0.0005 29 1 2.9700 -4.4265 0.0101 30 1 5.2782 -3.6129 0.0024 31 1 10.1645 -4.2703 -0.2029 32 1 8.2655 -3.1035 1.5936 33 1 7.7314 -1.4547 1.9989 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227083077.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:57 Heat of formation + Delta-G solvation = 40.472124 kcal Electronic energy + Delta-G solvation = -19420.622634 eV Core-core repulsion = 16281.064882 eV Total energy + Delta-G solvation = -3139.557753 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.02443 -38.57984 -35.81658 -34.72667 -33.43848 -32.59661 -30.30081 -29.66029 -28.51607 -26.54205 -25.26500 -23.79430 -21.77769 -20.94228 -19.37903 -17.29200 -17.01169 -16.74090 -15.81622 -15.10257 -15.07461 -14.45162 -14.31567 -14.09111 -13.30656 -12.99374 -12.97157 -12.82198 -12.33212 -11.97090 -11.88880 -11.38140 -11.34118 -11.09956 -11.00937 -10.79402 -10.63840 -10.22196 -10.09835 -9.68376 -9.45212 -9.27993 -8.98361 -8.59971 -8.09317 -6.59445 -6.37627 -4.44675 1.10702 2.25973 2.83563 2.89211 3.18980 3.24088 3.27227 3.48575 4.03767 4.32810 4.40599 4.65512 4.80867 4.93175 4.98691 5.31622 5.52861 5.63705 5.67967 5.84337 5.93528 6.08849 6.24505 6.36737 6.40840 6.75890 6.84052 7.01175 7.18403 7.21261 7.31491 7.40619 7.59939 7.81227 7.84821 8.44601 8.76391 9.22625 10.69282 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.024023 B = 0.005325 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.260390 B = 5256.588383 C = 5820.858930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.074 3.926 3 N -0.434 5.434 4 H 0.437 0.563 5 N -0.279 5.279 6 C 0.098 3.902 7 C -0.163 4.163 8 C -0.123 4.123 9 C -0.087 4.087 10 C -0.202 4.202 11 C 0.180 3.820 12 O -0.303 6.303 13 C 0.205 3.795 14 H 0.054 0.946 15 C -0.520 4.520 16 H 0.075 0.925 17 C 0.064 3.936 18 N -0.890 5.890 19 Si 0.916 3.084 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.272 1.272 23 C -0.035 4.035 24 Cl -0.239 7.239 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.141 0.859 31 H 0.272 0.728 32 H 0.133 0.867 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.524 3.318 0.946 14.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.062 4.062 3 N -0.138 5.138 4 H 0.280 0.720 5 N -0.107 5.107 6 C -0.056 4.056 7 C -0.173 4.173 8 C -0.143 4.143 9 C -0.106 4.106 10 C -0.225 4.225 11 C 0.130 3.870 12 O -0.215 6.215 13 C 0.150 3.850 14 H 0.071 0.929 15 C -0.557 4.557 16 H 0.094 0.906 17 C -0.139 4.139 18 N -0.527 5.527 19 Si 0.743 3.257 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.197 1.197 23 C -0.098 4.098 24 Cl -0.214 7.214 25 H 0.098 0.902 26 H 0.088 0.912 27 H 0.105 0.895 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.159 0.841 31 H 0.082 0.918 32 H 0.151 0.849 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.664 4.391 1.034 14.390 hybrid contribution 0.264 -0.234 -0.265 0.441 sum -13.400 4.157 0.769 14.051 Atomic orbital electron populations 1.20394 0.86808 1.03831 1.03283 1.20976 0.93952 0.87164 1.04105 1.46221 1.04757 1.08291 1.54536 0.71969 1.77758 0.92348 1.12416 1.28130 1.20231 0.92978 0.90496 1.01909 1.19070 0.90535 0.94011 1.13644 1.19848 0.98331 0.89749 1.06407 1.20239 0.91697 0.98952 0.99746 1.20781 0.98110 0.94433 1.09187 1.17616 0.83645 0.89989 0.95796 1.86161 1.11262 1.38389 1.85728 1.20542 0.85166 0.88140 0.91103 0.92882 1.20991 0.97093 1.05286 1.32365 0.90641 1.24962 0.99013 0.94480 0.95431 1.69791 1.30945 1.09413 1.42556 0.86238 0.80795 0.78422 0.80286 1.19780 1.20874 1.19749 1.25746 0.88963 1.01146 0.93939 1.98643 1.52646 1.88778 1.81298 0.90193 0.91157 0.89502 0.86795 0.86664 0.84148 0.91810 0.84887 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.44 36.00 0.38 -0.28 16 2 C 0.07 0.97 7.27 -81.62 -0.59 0.38 16 3 N -0.43 -6.02 7.19 33.86 0.24 -5.78 16 4 H 0.44 4.11 8.96 -182.70 -1.64 2.48 16 5 N -0.28 -5.47 12.70 33.31 0.42 -5.04 16 6 C 0.10 2.04 7.45 -82.95 -0.62 1.42 16 7 C -0.16 -2.76 6.26 -105.19 -0.66 -3.42 16 8 C -0.12 -1.92 10.09 -39.36 -0.40 -2.31 16 9 C -0.09 -1.48 9.89 -39.99 -0.40 -1.87 16 10 C -0.20 -4.13 6.93 -39.82 -0.28 -4.40 16 11 C 0.18 4.03 6.00 -39.07 -0.23 3.79 16 12 O -0.30 -7.60 9.75 -19.29 -0.19 -7.78 16 13 C 0.21 5.18 2.19 -27.88 -0.06 5.12 16 14 H 0.05 1.39 5.44 -51.93 -0.28 1.11 16 15 C -0.52 -13.96 8.89 -34.44 -0.31 -14.27 16 16 H 0.08 2.06 7.81 -52.49 -0.41 1.65 16 17 C 0.06 1.66 5.29 -17.82 -0.09 1.57 16 18 N -0.89 -23.39 11.29 55.43 0.63 -22.77 16 19 Si 0.92 20.31 29.54 -169.99 -5.02 15.29 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 23 C -0.04 -0.83 6.17 37.16 0.23 -0.61 16 24 Cl -0.24 -5.13 25.50 -51.86 -1.32 -6.45 16 25 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 29 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 30 H 0.14 3.03 4.92 -52.49 -0.26 2.77 16 31 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 32 H 0.13 3.31 5.95 -51.93 -0.31 3.01 16 33 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 LS Contribution 294.24 15.07 4.43 4.43 Total: -1.00 -30.38 294.24 -8.40 -38.78 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -4.57 Total: 4.20 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -3.03 Total: -14.88 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: 1.29 Total: -33.59 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -0.19 Total: -7.78 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 17 Polarization: -5.13 SS G_CDS: -1.32 Total: -6.45 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.38 -8.40 -38.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227083077.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.255 kcal (2) G-P(sol) polarization free energy of solvation -30.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds