Wall clock time and date at job start Tue Mar 31 2020 01:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34104 * 126.04793 * 2 1 4 4 H 0.96993 * 125.04641 * 0.02562 * 3 2 1 5 5 N 1.39968 * 109.90513 * 179.97438 * 3 2 1 6 6 C 1.32020 * 108.95011 * 359.97438 * 5 3 2 7 7 C 1.38180 * 126.04871 * 179.97438 * 2 1 3 8 8 C 1.41269 * 134.77962 * 0.04321 * 7 2 1 9 9 C 1.35643 * 119.63335 * 180.22908 * 8 7 2 10 10 C 1.39627 * 121.78192 * 359.52350 * 9 8 7 11 11 C 1.36127 * 121.75116 * 0.46864 * 10 9 8 12 12 O 1.35857 * 120.24395 * 179.76114 * 11 10 9 13 13 C 1.42894 * 117.00076 * 356.66520 * 12 11 10 14 14 H 1.08995 * 109.47455 * 27.64007 * 13 12 11 15 15 C 1.50706 * 109.47064 * 147.63918 * 13 12 11 16 16 H 1.07990 * 120.00066 * 0.02562 * 15 13 12 17 17 C 1.37879 * 119.99988 * 179.97438 * 15 13 12 18 18 N 1.31520 * 119.99922 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 119.99947 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47049 * 60.00529 * 19 17 15 21 21 H 1.48498 * 109.46896 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47312 * 299.99991 * 19 17 15 23 23 C 1.53004 * 109.47223 * 267.63817 * 13 12 11 24 24 Cl 1.80299 * 109.46939 * 64.99927 * 23 13 12 25 25 H 1.09001 * 109.47501 * 270.02692 * 1 2 3 26 26 H 1.09004 * 109.47369 * 30.02443 * 1 2 3 27 27 H 1.09005 * 109.47491 * 150.02162 * 1 2 3 28 28 H 1.07998 * 120.18286 * 359.95524 * 8 7 2 29 29 H 1.08004 * 119.10791 * 179.72318 * 9 8 7 30 30 H 1.07997 * 119.12437 * 180.22656 * 10 9 8 31 31 H 0.96998 * 120.00078 * 179.97438 * 18 17 15 32 32 H 1.08995 * 109.46937 * 185.00001 * 23 13 12 33 33 H 1.08998 * 109.46727 * 305.00268 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2961 1.0843 0.0000 4 1 1.9818 2.0019 0.0004 5 7 3.6406 0.6951 0.0006 6 6 3.7053 -0.6235 0.0015 7 6 2.3201 -1.1172 0.0005 8 6 2.0949 -2.5118 0.0004 9 6 3.1520 -3.3619 0.0057 10 6 4.4689 -2.8978 0.0016 11 6 4.7598 -1.5680 0.0014 12 8 6.0526 -1.1503 0.0021 13 6 7.0606 -2.1604 0.0772 14 1 6.6808 -3.0857 -0.3558 15 6 8.2795 -1.7114 -0.6870 16 1 8.2840 -0.7507 -1.1802 17 6 9.3892 -2.5267 -0.7555 18 7 9.3839 -3.6965 -0.1544 19 14 10.8997 -1.9705 -1.7033 20 1 11.4171 -0.7094 -1.1142 21 1 11.9473 -3.0201 -1.6251 22 1 10.5355 -1.7402 -3.1244 23 6 7.4357 -2.3987 1.5413 24 17 6.0160 -3.0753 2.4229 25 1 -0.3634 0.0005 1.0276 26 1 -0.3634 0.8898 -0.5142 27 1 -0.3634 -0.8902 -0.5135 28 1 1.0868 -2.8991 0.0005 29 1 2.9700 -4.4265 0.0101 30 1 5.2782 -3.6129 0.0024 31 1 10.1645 -4.2703 -0.2029 32 1 8.2655 -3.1035 1.5936 33 1 7.7314 -1.4547 1.9989 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227083077.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:57 Heat of formation + Delta-G solvation = 20.951982 kcal Electronic energy + Delta-G solvation = -19421.469091 eV Core-core repulsion = 16281.064882 eV Total energy + Delta-G solvation = -3140.404209 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.29509 -40.21467 -37.27833 -36.51820 -35.34470 -33.77016 -31.63129 -31.37344 -29.92619 -27.62373 -27.27143 -25.25085 -23.23043 -22.55234 -20.78792 -18.85886 -18.49241 -18.33910 -17.24906 -16.87380 -16.41525 -15.94460 -15.75585 -15.62022 -15.02541 -14.53015 -13.99131 -13.89028 -13.71979 -13.55507 -13.18724 -13.00471 -12.93486 -12.69097 -12.66201 -12.43287 -12.24517 -11.96320 -11.45870 -11.34500 -11.17197 -11.05118 -10.62467 -10.49524 -9.47725 -8.37406 -8.02001 -6.52534 -0.15591 0.88581 1.40003 1.42094 1.51780 1.52795 1.61448 1.82187 2.28104 2.70694 2.96539 2.99968 3.39769 3.75073 4.09688 4.23342 4.30039 4.34350 4.43093 4.62858 4.66092 4.81964 4.88430 4.93994 5.07540 5.16199 5.23172 5.50741 5.53783 5.62687 5.78830 5.88698 6.05711 6.30177 6.44715 6.58909 6.95398 7.20850 8.69951 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.024023 B = 0.005325 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.260390 B = 5256.588383 C = 5820.858930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.123 3.877 3 N -0.417 5.417 4 H 0.456 0.544 5 N -0.339 5.339 6 C 0.070 3.930 7 C -0.203 4.203 8 C -0.080 4.080 9 C -0.126 4.126 10 C -0.186 4.186 11 C 0.123 3.877 12 O -0.332 6.332 13 C 0.213 3.787 14 H 0.035 0.965 15 C -0.552 4.552 16 H 0.059 0.941 17 C 0.029 3.971 18 N -0.907 5.907 19 Si 0.978 3.022 20 H -0.269 1.269 21 H -0.270 1.270 22 H -0.271 1.271 23 C -0.024 4.024 24 Cl -0.218 7.218 25 H 0.104 0.896 26 H 0.101 0.899 27 H 0.105 0.895 28 H 0.163 0.837 29 H 0.142 0.858 30 H 0.118 0.882 31 H 0.277 0.723 32 H 0.120 0.880 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.788 3.557 0.843 18.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.016 4.016 3 N -0.122 5.122 4 H 0.304 0.696 5 N -0.169 5.169 6 C -0.082 4.082 7 C -0.212 4.212 8 C -0.100 4.100 9 C -0.145 4.145 10 C -0.210 4.210 11 C 0.075 3.925 12 O -0.246 6.246 13 C 0.158 3.842 14 H 0.052 0.948 15 C -0.589 4.589 16 H 0.077 0.923 17 C -0.172 4.172 18 N -0.544 5.544 19 Si 0.801 3.199 20 H -0.194 1.194 21 H -0.195 1.195 22 H -0.196 1.196 23 C -0.087 4.087 24 Cl -0.193 7.193 25 H 0.122 0.878 26 H 0.119 0.881 27 H 0.123 0.877 28 H 0.181 0.819 29 H 0.159 0.841 30 H 0.136 0.864 31 H 0.087 0.913 32 H 0.138 0.862 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.945 4.651 0.941 17.597 hybrid contribution 0.927 -0.254 -0.208 0.984 sum -16.018 4.397 0.733 16.626 Atomic orbital electron populations 1.20746 0.81798 1.06339 1.05496 1.21931 0.96289 0.85366 0.98053 1.46293 1.03450 1.09825 1.52605 0.69634 1.77671 0.95321 1.12350 1.31527 1.20411 0.94197 0.91130 1.02468 1.19578 0.89421 0.95813 1.16421 1.20381 0.99989 0.88872 1.00793 1.20470 0.90536 1.00746 1.02773 1.20809 0.99329 0.93336 1.07492 1.17956 0.82833 0.91486 1.00259 1.86078 1.12713 1.38424 1.87410 1.20255 0.85022 0.87559 0.91409 0.94806 1.21189 0.98723 1.05194 1.33793 0.92270 1.25705 1.01261 0.94350 0.95908 1.69870 1.31777 1.09962 1.42793 0.85302 0.77477 0.78334 0.78798 1.19406 1.19492 1.19641 1.25379 0.89205 1.00463 0.93693 1.98629 1.51528 1.88451 1.80644 0.87769 0.88064 0.87675 0.81911 0.84072 0.86439 0.91339 0.86207 0.91415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.77 10.44 71.23 0.74 -0.02 16 2 C 0.12 2.75 7.27 42.20 0.31 3.06 16 3 N -0.42 -10.67 7.19 -46.80 -0.34 -11.01 16 4 H 0.46 7.34 8.96 -213.41 -1.91 5.43 16 5 N -0.34 -13.57 12.70 -48.52 -0.62 -14.19 16 6 C 0.07 2.99 7.45 42.25 0.31 3.31 16 7 C -0.20 -6.43 6.26 -20.24 -0.13 -6.56 16 8 C -0.08 -2.25 10.09 22.41 0.23 -2.02 16 9 C -0.13 -4.17 9.89 22.00 0.22 -3.95 16 10 C -0.19 -7.95 6.93 22.11 0.15 -7.79 16 11 C 0.12 5.83 6.00 22.60 0.14 5.96 16 12 O -0.33 -17.96 9.75 -91.94 -0.90 -18.86 16 13 C 0.21 11.50 2.19 29.85 0.07 11.56 16 14 H 0.03 1.94 5.44 -2.39 -0.01 1.92 16 15 C -0.55 -31.39 8.89 25.60 0.23 -31.17 16 16 H 0.06 3.46 7.81 -2.92 -0.02 3.43 16 17 C 0.03 1.56 5.29 84.65 0.45 2.01 16 18 N -0.91 -49.06 11.29 21.45 0.24 -48.82 16 19 Si 0.98 42.43 29.54 68.60 2.03 44.46 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 21 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 23 C -0.02 -1.22 6.17 71.98 0.44 -0.78 16 24 Cl -0.22 -9.68 25.50 -2.72 -0.07 -9.75 16 25 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.10 0.41 8.14 -2.38 -0.02 0.39 16 27 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 28 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 29 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 30 H 0.12 5.43 4.92 -2.91 -0.01 5.42 16 31 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 32 H 0.12 6.28 5.95 -2.39 -0.01 6.27 16 33 H 0.07 3.38 8.14 -2.39 -0.02 3.36 16 Total: -1.00 -71.98 294.24 2.75 -69.22 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -0.75 Total: 15.34 kcal Atomic # 6 Polarization: -29.55 SS G_CDS: 3.16 Total: -26.40 kcal Atomic # 7 Polarization: -73.31 SS G_CDS: -0.71 Total: -74.02 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.90 Total: -18.86 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Atomic # 17 Polarization: -9.68 SS G_CDS: -0.07 Total: -9.75 kcal Total: -71.98 2.75 -69.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227083077.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.172 kcal (2) G-P(sol) polarization free energy of solvation -71.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds