Wall clock time and date at job start Tue Mar 31 2020 01:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.37970 * 120.07348 * 2 1 4 4 C 1.38683 * 120.43051 * 179.97438 * 3 2 1 5 5 C 1.37710 * 120.50159 * 0.02562 * 4 3 2 6 6 C 1.39657 * 119.77670 * 0.02562 * 5 4 3 7 7 N 1.35916 * 133.44869 * 180.37594 * 6 5 4 8 8 C 1.30755 * 109.62405 * 180.02562 * 7 6 5 9 9 O 1.35272 * 125.02889 * 179.83214 * 8 7 6 10 10 C 1.42911 * 116.99808 * 359.69960 * 9 8 7 11 11 H 1.09000 * 109.46984 * 29.99777 * 10 9 8 12 12 C 1.50701 * 109.46897 * 149.99945 * 10 9 8 13 13 H 1.07999 * 120.00281 * 5.32414 * 12 10 9 14 14 C 1.37880 * 119.99612 * 185.31800 * 12 10 9 15 15 N 1.31509 * 119.99887 * 5.57640 * 14 12 10 16 16 Si 1.86798 * 119.99723 * 185.30135 * 14 12 10 17 17 H 1.48496 * 109.47254 * 84.99976 * 16 14 12 18 18 H 1.48506 * 109.46794 * 205.00118 * 16 14 12 19 19 H 1.48499 * 109.47351 * 324.99756 * 16 14 12 20 20 C 1.53004 * 109.46869 * 269.99857 * 10 9 8 21 21 Cl 1.80299 * 109.47239 * 65.67467 * 20 10 9 22 22 N 1.36388 * 109.94505 * 359.56947 * 8 7 6 23 23 H 0.96992 * 126.36799 * 180.28727 * 22 8 7 24 24 C 1.38456 * 107.26978 * 0.26033 * 22 8 7 25 25 H 1.08998 * 109.47102 * 269.97989 * 1 2 3 26 26 H 1.08996 * 109.47043 * 29.98207 * 1 2 3 27 27 H 1.09005 * 109.47025 * 149.97383 * 1 2 3 28 28 H 1.07995 * 119.78831 * 0.02562 * 3 2 1 29 29 H 1.07998 * 119.74733 * 180.02562 * 4 3 2 30 30 H 1.08004 * 120.10793 * 179.97438 * 5 4 3 31 31 H 0.97005 * 120.00076 * 179.72956 * 15 14 12 32 32 H 1.08997 * 109.46922 * 185.67112 * 20 10 9 33 33 H 1.09005 * 109.47215 * 305.67538 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1940 0.0000 4 6 3.5853 1.2026 0.0005 5 6 4.2916 0.0205 0.0005 6 6 3.6068 -1.1967 -0.0005 7 7 4.0084 -2.4951 0.0057 8 6 2.9615 -3.2786 0.0005 9 8 3.0036 -4.6307 0.0011 10 6 4.2965 -5.2395 0.0013 11 1 5.0044 -4.5889 0.5147 12 6 4.2268 -6.5664 0.7123 13 1 3.2745 -6.9502 1.0472 14 6 5.3788 -7.2904 0.9352 15 7 6.5490 -6.7755 0.6268 16 14 5.2779 -8.9995 1.6822 17 1 5.0296 -9.9951 0.6088 18 1 6.5575 -9.3172 2.3658 19 1 4.1666 -9.0449 2.6661 20 6 4.7577 -5.4574 -1.4412 21 17 5.0015 -3.8606 -2.2421 22 7 1.8209 -2.5309 0.0003 23 1 0.9117 -2.8688 0.0008 24 6 2.2019 -1.1998 -0.0003 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3633 0.8901 -0.5135 27 1 -0.3633 -0.8898 -0.5143 28 1 1.6562 2.1279 0.0004 29 1 4.1153 2.1436 0.0009 30 1 5.3716 0.0346 0.0005 31 1 7.3598 -7.2833 0.7873 32 1 5.6963 -6.0117 -1.4427 33 1 4.0004 -6.0238 -1.9832 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227268882.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:27 Heat of formation + Delta-G solvation = 0.146158 kcal Electronic energy + Delta-G solvation = -19354.949578 eV Core-core repulsion = 16213.643160 eV Total energy + Delta-G solvation = -3141.306418 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.98885 -39.83634 -37.88146 -36.50807 -35.30166 -34.68474 -32.17219 -31.49707 -29.60264 -27.60407 -27.27795 -24.30588 -23.30507 -22.43314 -21.54741 -19.37348 -18.94458 -17.99180 -17.73342 -17.10298 -16.59220 -15.71370 -15.49285 -15.31198 -15.15004 -14.64681 -14.31015 -14.11105 -13.91985 -13.49963 -13.24130 -13.04663 -12.90054 -12.65744 -12.58724 -12.29209 -12.17486 -11.97160 -11.75045 -11.43688 -11.18793 -10.81774 -10.72018 -10.48384 -9.07588 -8.70437 -8.38203 -6.56473 0.13353 0.64528 1.17049 1.41608 1.44367 1.55383 1.63939 1.95691 2.32986 2.94328 2.99567 3.03379 3.45986 3.92879 4.13235 4.28603 4.31238 4.36828 4.41637 4.48546 4.74340 4.81965 4.87292 4.92178 5.02403 5.18697 5.30727 5.39945 5.55272 5.64178 5.68248 5.73968 5.96078 6.13220 6.53241 6.73901 7.05378 7.17534 8.69685 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.026794 B = 0.004949 C = 0.004641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.743225 B = 5656.116059 C = 6031.102125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.075 4.075 3 C -0.116 4.116 4 C -0.110 4.110 5 C -0.109 4.109 6 C 0.041 3.959 7 N -0.546 5.546 8 C 0.464 3.536 9 O -0.308 6.308 10 C 0.237 3.763 11 H 0.036 0.964 12 C -0.555 4.555 13 H 0.072 0.928 14 C 0.028 3.972 15 N -0.906 5.906 16 Si 0.982 3.018 17 H -0.264 1.264 18 H -0.278 1.278 19 H -0.267 1.267 20 C -0.022 4.022 21 Cl -0.211 7.211 22 N -0.584 5.584 23 H 0.433 0.567 24 C 0.029 3.971 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.057 0.943 28 H 0.166 0.834 29 H 0.159 0.841 30 H 0.120 0.880 31 H 0.276 0.724 32 H 0.102 0.898 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.202 12.161 -1.751 15.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.078 4.078 3 C -0.135 4.135 4 C -0.130 4.130 5 C -0.129 4.129 6 C -0.076 4.076 7 N -0.284 5.284 8 C 0.160 3.840 9 O -0.212 6.212 10 C 0.181 3.819 11 H 0.054 0.946 12 C -0.592 4.592 13 H 0.091 0.909 14 C -0.175 4.175 15 N -0.542 5.542 16 Si 0.805 3.195 17 H -0.189 1.189 18 H -0.203 1.203 19 H -0.191 1.191 20 C -0.086 4.086 21 Cl -0.185 7.185 22 N -0.208 5.208 23 H 0.274 0.726 24 C -0.078 4.078 25 H 0.098 0.902 26 H 0.113 0.887 27 H 0.076 0.924 28 H 0.184 0.816 29 H 0.177 0.823 30 H 0.138 0.862 31 H 0.085 0.915 32 H 0.121 0.879 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.268 11.720 -1.811 15.051 hybrid contribution -0.495 -1.162 0.187 1.277 sum -9.764 10.558 -1.624 14.472 Atomic orbital electron populations 1.20789 0.88769 1.03784 1.03204 1.19187 0.97186 0.88723 1.02729 1.21139 0.93904 0.97120 1.01339 1.21191 0.94583 0.97265 0.99937 1.20427 0.99957 0.89481 1.02994 1.19382 0.91528 0.91946 1.04756 1.70980 1.26797 1.01357 1.29297 1.20954 0.82907 0.85495 0.94639 1.85876 1.36876 1.10722 1.87684 1.20251 0.76885 0.92631 0.92094 0.94645 1.21175 0.95307 1.02941 1.39791 0.90944 1.25810 0.93937 1.02762 0.94959 1.70054 0.98456 1.38989 1.46744 0.85198 0.77897 0.77682 0.78721 1.18863 1.20317 1.19128 1.25194 1.04132 0.84067 0.95176 1.98659 1.98033 1.38248 1.83528 1.42239 1.08250 1.04037 1.66256 0.72633 1.18763 0.95039 0.84116 1.09853 0.90176 0.88707 0.92380 0.81632 0.82338 0.86193 0.91481 0.87949 0.89835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.78 10.02 71.24 0.71 -1.06 16 2 C -0.08 -1.84 5.89 -19.83 -0.12 -1.95 16 3 C -0.12 -2.38 9.69 22.31 0.22 -2.17 16 4 C -0.11 -2.56 10.01 22.25 0.22 -2.34 16 5 C -0.11 -3.54 10.10 22.49 0.23 -3.31 16 6 C 0.04 1.63 7.22 39.40 0.28 1.92 16 7 N -0.55 -25.36 8.11 -306.48 -2.49 -27.85 16 8 C 0.46 20.48 7.94 179.75 1.43 21.91 16 9 O -0.31 -14.83 9.81 -85.57 -0.84 -15.67 16 10 C 0.24 12.38 2.15 29.85 0.06 12.45 16 11 H 0.04 2.12 7.21 -2.39 -0.02 2.10 16 12 C -0.55 -29.80 8.82 25.60 0.23 -29.57 16 13 H 0.07 3.82 7.82 -2.91 -0.02 3.80 16 14 C 0.03 1.44 5.22 84.66 0.44 1.88 16 15 N -0.91 -49.63 11.96 21.45 0.26 -49.37 16 16 Si 0.98 40.77 29.54 68.60 2.03 42.80 16 17 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 18 H -0.28 -11.28 7.11 99.48 0.71 -10.58 16 19 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 20 C -0.02 -1.08 6.22 71.98 0.45 -0.63 16 21 Cl -0.21 -9.63 26.14 -2.72 -0.07 -9.70 16 22 N -0.58 -20.20 6.26 -302.48 -1.89 -22.09 16 23 H 0.43 11.74 8.96 -92.71 -0.83 10.91 16 24 C 0.03 0.98 6.96 38.74 0.27 1.25 16 25 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.09 1.09 8.09 -2.39 -0.02 1.07 16 27 H 0.06 0.95 8.09 -2.38 -0.02 0.93 16 28 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 29 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 30 H 0.12 3.86 8.06 -2.91 -0.02 3.83 16 31 H 0.28 14.15 8.31 -92.70 -0.77 13.38 16 32 H 0.10 5.27 6.62 -2.39 -0.02 5.25 16 33 H 0.08 3.75 8.14 -2.38 -0.02 3.74 16 Total: -1.00 -65.07 298.93 1.73 -63.34 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.32 Total: 20.19 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: 4.42 Total: -1.64 kcal Atomic # 7 Polarization: -95.19 SS G_CDS: -4.12 Total: -99.31 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.84 Total: -15.67 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Atomic # 17 Polarization: -9.63 SS G_CDS: -0.07 Total: -9.70 kcal Total: -65.07 1.73 -63.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227268882.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.484 kcal (2) G-P(sol) polarization free energy of solvation -65.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds